Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 2.3e-87 325.5 160 100.0
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 8.3e-69 263.8 154 83.8
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 9.2e-68 260.4 153 83.7
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 1.6e-67 259.6 153 83.7
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 2.7e-67 258.8 153 82.4
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 3.0e-66 255.4 156 82.7
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 3.0e-66 255.4 158 82.3
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 5.0e-66 254.6 153 83.0
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 5.0e-66 254.6 153 83.0
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 5.0e-66 254.6 153 83.0
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 3.3e-65 251.9 153 78.4
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 9.5e-65 250.4 153 77.8
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 9.5e-65 250.4 153 77.8
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 9.5e-65 250.4 157 79.6
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 1.2e-64 250.0 156 80.1
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 2.1e-64 249.2 156 80.1
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 4.7e-64 248.1 158 81.6
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 3.1e-63 245.4 156 76.9
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 4.0e-63 245.0 158 77.2
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 5.2e-63 244.6 158 78.5
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 6.8e-63 244.2 159 80.5
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 6.8e-63 244.2 158 79.1
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 1.2e-62 243.4 158 79.1
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 1.5e-62 243.0 157 78.3
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.5e-62 243.0 156 79.5
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 2.0e-62 242.7 155 78.7
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 2.6e-62 242.3 156 78.8
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 3.4e-62 241.9 158 75.9
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 4.4e-62 241.5 156 76.9
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 5.8e-62 241.1 158 75.9
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 5.8e-62 241.1 150 79.3
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 9.8e-62 240.4 159 79.9
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 2.2e-61 239.2 158 77.8
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 2.2e-61 239.2 154 77.3
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 4.9e-61 238.0 150 79.3
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 6.4e-61 237.7 158 77.8
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 6.4e-61 237.7 154 77.9
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 8.3e-61 237.3 154 78.6
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 8.3e-61 237.3 155 74.8
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 1.1e-60 236.9 155 78.1
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 1.1e-60 236.9 158 75.3
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 1.1e-60 236.9 158 77.8
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 1.1e-60 236.9 148 79.1
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 2.4e-60 235.7 150 81.3
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 2.4e-60 235.7 159 76.7
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 4.1e-60 235.0 155 77.4
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 5.4e-60 234.6 157 75.2
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 7.0e-60 234.2 157 75.8
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 7.0e-60 234.2 155 77.4
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 7.0e-60 234.2 155 73.5
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.6e-59 233.0 155 76.1
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 2.1e-59 232.6 156 77.6
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 3.5e-59 231.9 157 77.7
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 3.5e-59 231.9 157 74.5
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 4.6e-59 231.5 155 75.5
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 4.6e-59 231.5 155 75.5
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 4.6e-59 231.5 155 73.5
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 7.8e-59 230.7 155 75.5
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 7.8e-59 230.7 156 74.4
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 7.8e-59 230.7 156 73.7
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 1.0e-58 230.3 155 78.7
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 1.0e-58 230.3 155 74.2
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 1.0e-58 230.3 155 74.2
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 1.3e-58 229.9 155 75.5
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 1.3e-58 229.9 155 75.5
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 1.7e-58 229.6 155 74.8
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 1.7e-58 229.6 155 74.8
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 2.3e-58 229.2 155 75.5
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 2.3e-58 229.2 159 76.1
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 3.0e-58 228.8 159 76.1
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 3.0e-58 228.8 159 76.1
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 3.0e-58 228.8 159 76.1
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 8.6e-58 227.3 155 74.2
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 1.1e-57 226.9 155 72.9
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 1.1e-57 226.9 157 75.2
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 1.5e-57 226.5 155 73.5
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 1.9e-57 226.1 155 73.5
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 1.9e-57 226.1 155 74.2
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 2.5e-57 225.7 157 72.6
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 3.3e-57 225.3 146 78.1
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 7.3e-57 224.2 155 72.9
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 9.5e-57 223.8 156 73.7
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 1.2e-56 223.4 159 74.8
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 1.6e-56 223.0 156 71.8
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.8e-56 222.2 150 72.7
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.8e-56 222.2 150 72.7
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 2.8e-56 222.2 153 73.2
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 3.6e-56 221.9 159 72.3
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 1.1e-55 220.3 155 72.3
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 1.4e-55 219.9 157 72.0
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 1.4e-55 219.9 150 76.0
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 1.4e-55 219.9 159 73.6
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 1.8e-55 219.5 150 75.3
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 2.3e-55 219.2 158 70.9
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 2.3e-55 219.2 154 72.7
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 4.0e-55 218.4 154 72.1
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 5.2e-55 218.0 155 71.6
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 5.2e-55 218.0 155 71.6
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 5.2e-55 218.0 155 71.6
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 5.2e-55 218.0 155 71.6
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 6.8e-55 217.6 155 71.0
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 2.0e-54 216.1 155 72.9
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 2.0e-54 216.1 155 72.3
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 2.6e-54 215.7 159 71.7
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 5.8e-54 214.5 157 69.4
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 1.3e-53 213.4 168 69.0
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 2.2e-53 212.6 160 68.1
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 4.1e-52 208.4 158 70.3
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 4.1e-52 208.4 157 68.8
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 7.1e-52 207.6 158 70.3
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 1.6e-51 206.5 147 69.4
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 4.6e-51 204.9 153 67.3
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 6.0e-51 204.5 155 69.7
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 2.3e-50 202.6 129 81.4
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 4.7e-48 194.9 145 72.4
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 4.7e-48 194.9 150 72.0
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.4e-47 193.4 151 69.5
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 2.4e-47 192.6 149 66.4
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 5.2e-47 191.4 151 62.9
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 5.2e-47 191.4 138 70.3
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 2.0e-46 189.5 158 65.2
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 2.6e-46 189.1 155 60.6
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 7.6e-46 187.6 114 84.2
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 1.7e-45 186.4 125 78.4
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 8.4e-45 184.1 151 64.9
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 4.2e-44 181.8 157 66.2
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.0e-42 175.6 115 78.3
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 3.6e-40 168.7 148 59.5
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 3.4e-38 162.2 158 58.9
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 9.3e-36 154.1 114 74.6
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 6.6e-34 147.9 119 66.4
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 1.9e-33 146.4 164 54.3
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 1.9e-28 129.8 116 62.1
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 9.9e-22 107.5 75 77.3
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 2.8e-16 89.4 80 65.0
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 1.3e-13 80.5 218 31.7
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 9.7e-09 64.3 44 65.9
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 6.3e-08 61.6 33 81.8


User provided reference genes

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