Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 5.0e-27 123.6 60 100.0
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 1.8e-16 88.6 58 74.1
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 4.4e-15 84.0 59 71.2
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 2.2e-14 81.6 60 66.7
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 1.1e-13 79.3 58 67.2
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 5.4e-13 77.0 53 67.9
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 5.4e-13 77.0 53 71.7
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 5.4e-13 77.0 52 63.5
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 7.1e-13 76.6 52 69.2
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 7.1e-13 76.6 61 63.9
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 9.2e-13 76.3 58 65.5
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 9.2e-13 76.3 47 70.2
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 1.2e-12 75.9 58 60.3
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 1.2e-12 75.9 58 63.8
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 1.2e-12 75.9 54 68.5
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 1.6e-12 75.5 52 63.5
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.6e-12 75.5 36 86.1
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 1.6e-12 75.5 58 63.8
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 2.1e-12 75.1 52 67.3
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.1e-12 75.1 52 67.3
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 2.7e-12 74.7 58 58.6
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 2.7e-12 74.7 58 58.6
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 2.7e-12 74.7 58 58.6
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 2.7e-12 74.7 61 62.3
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 2.7e-12 74.7 60 58.3
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 2.7e-12 74.7 50 66.0
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 3.5e-12 74.3 58 62.1
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 3.5e-12 74.3 48 66.7
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 3.5e-12 74.3 48 66.7
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 3.5e-12 74.3 36 86.1
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 4.6e-12 73.9 49 67.3
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 4.6e-12 73.9 60 61.7
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 6.0e-12 73.6 55 60.0
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 6.0e-12 73.6 58 55.2
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 6.0e-12 73.6 58 55.2
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 6.0e-12 73.6 59 59.3
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 7.8e-12 73.2 35 85.7
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 1.3e-11 72.4 36 83.3
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 1.7e-11 72.0 48 64.6
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 1.7e-11 72.0 53 60.4
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 1.7e-11 72.0 58 62.1
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 1.7e-11 72.0 60 58.3
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 2.3e-11 71.6 47 68.1
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 2.3e-11 71.6 52 65.4
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 2.3e-11 71.6 60 56.7
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 3.0e-11 71.2 41 75.6
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 3.9e-11 70.9 35 80.0
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 3.9e-11 70.9 59 59.3
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 3.9e-11 70.9 46 65.2
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 5.1e-11 70.5 50 62.0
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 6.6e-11 70.1 59 62.7
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 8.6e-11 69.7 48 66.7
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 8.6e-11 69.7 58 58.6
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 8.6e-11 69.7 35 85.7
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 1.1e-10 69.3 32 87.5
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 1.1e-10 69.3 32 87.5
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 1.1e-10 69.3 32 87.5
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 1.1e-10 69.3 32 87.5
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 1.9e-10 68.6 31 90.3
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 2.5e-10 68.2 33 84.8
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 2.5e-10 68.2 54 59.3
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 3.3e-10 67.8 47 59.6
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 3.3e-10 67.8 59 57.6
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 3.3e-10 67.8 48 60.4
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 4.3e-10 67.4 49 61.2
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 7.3e-10 66.6 47 59.6
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 7.3e-10 66.6 47 59.6
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 7.3e-10 66.6 48 66.7
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 7.3e-10 66.6 53 56.6
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 9.5e-10 66.2 55 52.7
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 1.2e-09 65.9 50 56.0
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 1.6e-09 65.5 50 60.0
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 3.6e-09 64.3 31 83.9
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 6.2e-09 63.5 48 58.3
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 6.2e-09 63.5 58 55.2
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 6.2e-09 63.5 60 55.0
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 8.1e-09 63.2 50 54.0
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 1.8e-08 62.0 49 59.2
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 1.8e-08 62.0 51 54.9
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 8.9e-08 59.7 31 77.4
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 8.9e-08 59.7 32 75.0
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 5.8e-07 57.0 57 49.1
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 2.9e-06 54.7 32 68.8
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 8.4e-06 53.1 29 69.0


User provided reference genes

Program Settings