Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c33608 Carica papaya HOM05D000677 ORTHO05D024836 7.8e-39 163.3 82 100.0
FAN01G1016 Fragaria x ananassa HOM05D000677 ORTHO05D000727 1.1e-21 106.3 81 66.7
FvH4_7g02230 Fragaria vesca HOM05D000677 ORTHO05D000727 1.9e-21 105.5 81 66.7
FAN06G4392 Fragaria x ananassa HOM05D000677 ORTHO05D000727 1.9e-21 105.5 81 66.7
Prupe.2G028600 Prunus persica HOM05D000677 ORTHO05D000727 5.6e-21 104.0 81 65.4
Duzib128G0211 Durio zibethinus HOM05D000677 ORTHO05D000727 7.4e-21 103.6 81 66.7
Lj3g0019403 Lotus japonicus HOM05D000677 ORTHO05D000727 9.6e-21 103.2 82 61.0
FAN03G0987 Fragaria x ananassa HOM05D000677 ORTHO05D000727 1.3e-20 102.8 81 65.4
MD07G1029700 Malus domestica HOM05D000677 ORTHO05D000727 1.3e-20 102.8 81 64.2
RcHm_v2.0_Chr1g0319551 Rosa chinensis HOM05D000677 ORTHO05D000727 2.8e-20 101.7 81 61.7
COL.COLO4_25836 Corchorus olitorius HOM05D000677 ORTHO05D000727 1.1e-19 99.8 81 61.7
Eucgr.J01199 Eucalyptus grandis HOM05D000677 ORTHO05D000727 2.4e-19 98.6 81 59.3
PGR044G1200 Punica granatum HOM05D000677 ORTHO05D000727 6.9e-19 97.1 81 60.5
Atru.chr11.2500 Acer truncatum HOM05D000677 ORTHO05D000727 9.0e-19 96.7 81 60.5
Gohir.D13G014001 Gossypium hirsutum HOM05D000677 ORTHO05D000727 9.0e-19 96.7 81 63.0
Gorai.013G015200 Gossypium raimondii HOM05D000677 ORTHO05D000727 9.0e-19 96.7 81 63.0
Eucgr.J01196 Eucalyptus grandis HOM05D000677 ORTHO05D000727 1.2e-18 96.3 81 59.3
Thecc.10G005500 Theobroma cacao HOM05D000677 ORTHO05D000727 1.2e-18 96.3 81 59.3
Ciclev10033461m.g Citrus clementina HOM05D000677 ORTHO05D000727 2.6e-18 95.1 82 59.8
Duzib106G0580 Durio zibethinus HOM05D000677 ORTHO05D000727 2.6e-18 95.1 82 64.6
Migut.D00795 Erythranthe guttata HOM05D000677 ORTHO05D000727 4.5e-18 94.4 78 59.0
Gohir.A13G013000 Gossypium hirsutum HOM05D000677 ORTHO05D000727 4.5e-18 94.4 81 61.7
QL04p012780 Quercus lobata HOM05D000677 ORTHO05D000727 4.5e-18 94.4 81 58.0
CANSAT80G2597 Cannabis sativa HOM05D000677 ORTHO05D000727 5.8e-18 94.0 79 58.2
Eucgr.J01197 Eucalyptus grandis HOM05D000677 ORTHO05D000727 5.8e-18 94.0 81 60.5
Lalb_Chr03g0024231 Lupinus albus HOM05D000677 ORTHO05D000727 7.6e-18 93.6 81 54.3
GSVIVG01000848001 Vitis vinifera HOM05D000677 ORTHO05D000727 1.3e-17 92.8 81 58.0
TWI38G2282 Tripterygium wilfordii HOM05D000677 ORTHO05D000727 1.7e-17 92.4 85 54.1
CSS0009873 Camellia sinensis var. sinensis HOM05D000677 ORTHO05D000727 2.2e-17 92.0 81 58.0
MELO3C033949.2 Cucumis melo HOM05D000677 ORTHO05D000727 2.2e-17 92.0 82 57.3
Dinv32056 Davidia involucrata HOM05D000677 ORTHO05D000727 2.2e-17 92.0 81 58.0
Eucgr.J01195 Eucalyptus grandis HOM05D000677 ORTHO05D000727 2.2e-17 92.0 81 59.3
CiPaw.13G010300 Carya illinoinensis HOM05D000677 ORTHO05D000727 2.9e-17 91.7 79 57.0
Oeu006104.1 Olea europaea HOM05D000677 ORTHO05D000727 3.8e-17 91.3 75 61.3
QL04p013338 Quercus lobata HOM05D000677 ORTHO05D000727 3.8e-17 91.3 81 58.0
Cfa010854 Carpinus fangiana HOM05D000677 ORTHO05D000727 4.9e-17 90.9 81 60.5
MELO3C033753.2 Cucumis melo HOM05D000677 ORTHO05D000727 4.9e-17 90.9 81 56.8
QL04p013403 Quercus lobata HOM05D000677 ORTHO05D000727 6.5e-17 90.5 81 58.0
TPR.G21748 Trifolium pratense HOM05D000677 ORTHO05D000727 6.5e-17 90.5 81 55.6
Potri.001G023400 Populus trichocarpa HOM05D000677 ORTHO05D000727 1.4e-16 89.4 82 56.1
CsaV3_5G024640 Cucumis sativus L. HOM05D000677 ORTHO05D000727 1.9e-16 89.0 82 57.3
Medtr4g037670 Medicago truncatula HOM05D000677 ORTHO05D000727 1.9e-16 89.0 70 64.3
Migut.D00794 Erythranthe guttata HOM05D000677 ORTHO05D000727 2.5e-16 88.6 69 62.3
Phvul.011G014800 Phaseolus vulgaris HOM05D000677 ORTHO05D000727 3.2e-16 88.2 82 56.1
Potri.003G202200 Populus trichocarpa HOM05D000677 ORTHO05D000727 3.2e-16 88.2 81 58.0
Gohir.D13G014102 Gossypium hirsutum HOM05D000677 ORTHO05D024836 4.2e-16 87.8 81 56.8
Gorai.013G015300 Gossypium raimondii HOM05D000677 ORTHO05D024836 4.2e-16 87.8 81 56.8
CANSAT80G0361 Cannabis sativa HOM05D000677 ORTHO05D000727 7.1e-16 87.0 79 55.7
CsaV3_5G024650 Cucumis sativus L. HOM05D000677 ORTHO05D000727 7.1e-16 87.0 82 54.9
Glyma.09G225000 Glycine max HOM05D000677 ORTHO05D000727 7.1e-16 87.0 82 53.7
Glyma.12G012000 Glycine max HOM05D000677 ORTHO05D000727 9.3e-16 86.7 82 52.4
arahy.Tifrunner.gnm1.ann1.J3JZ4F Arachis hypogaea HOM05D000677 ORTHO05D000727 1.2e-15 86.3 82 53.7
arahy.Tifrunner.gnm1.ann1.ZE4J6B Arachis hypogaea HOM05D000677 ORTHO05D000727 1.2e-15 86.3 82 53.7
Sabra01G0017700 Salix brachista HOM05D000677 ORTHO05D000727 1.2e-15 86.3 82 56.1
Medtr1g052505 Medicago truncatula HOM05D000677 ORTHO05D000727 1.6e-15 85.9 70 62.9
VMungo1127G2079 Vigna mungo HOM05D000677 ORTHO05D000727 1.6e-15 85.9 82 52.4
VMungo1127G2073 Vigna mungo HOM05D000677 ORTHO05D000727 2.1e-15 85.5 82 53.7
DCAR_003235 Daucus carota HOM05D000063 ORTHO05D003101 3.5e-15 84.7 72 55.6
DCAR_022357 Daucus carota HOM05D000677 ORTHO05D000727 4.6e-15 84.3 64 60.9
CiPaw.13G010400 Carya illinoinensis HOM05D000677 ORTHO05D000727 6.0e-15 84.0 78 53.8
ClCG01G007620 Citrullus lanatus HOM05D000677 ORTHO05D000727 6.0e-15 84.0 82 52.4
Nn7g36482 Nelumbo nucifera HOM05D000677 ORTHO05D000727 6.0e-15 84.0 71 57.7
Psat2g118160 Pisum sativum HOM05D000677 ORTHO05D000727 6.0e-15 84.0 81 58.0
QL04p012805 Quercus lobata HOM05D000677 ORTHO05D024836 6.0e-15 84.0 81 53.1
QL04p013371 Quercus lobata HOM05D000677 ORTHO05D024836 6.0e-15 84.0 81 53.1
Sed0026976 Sechium edule HOM05D000677 ORTHO05D000727 6.0e-15 84.0 81 55.6
PGSC0003DMG400017958 Solanum tuberosum HOM05D000677 ORTHO05D000727 1.8e-14 82.4 81 53.1
Cc02_g29510 Coffea canephora HOM05D000677 ORTHO05D000727 2.3e-14 82.0 69 60.9
Lj7A579T38 Lonicera japonica HOM05D000677 ORTHO05D000727 3.0e-14 81.6 66 62.1
Peaxi162Scf00309g00120 Petunia axillaris HOM05D000677 ORTHO05D000727 3.0e-14 81.6 81 53.1
MBI13_g41711_MAGBIO Magnolia biondii HOM05D000677 ORTHO05D000727 3.9e-14 81.3 72 55.6
PSO339G0815 Papaver somniferum HOM05D000677 ORTHO05D000727 3.9e-14 81.3 66 57.6
TAR369G0724 Trochodendron aralioides HOM05D000677 ORTHO05D000727 5.1e-14 80.9 77 50.6
Zm00001eb369460 Zea mays HOM05D000677 ORTHO05D000727 8.7e-14 80.1 70 60.0
TWI38G1249 Tripterygium wilfordii HOM05D000677 ORTHO05D000727 1.1e-13 79.7 83 51.8
TWI38G0884 Tripterygium wilfordii HOM05D000677 ORTHO05D000727 1.5e-13 79.3 79 49.4
Solyc01g068380.3 Solanum lycopersicum HOM05D000677 ORTHO05D000727 1.9e-13 79.0 81 49.4
PSO513G0192 Papaver somniferum HOM05D000677 ORTHO05D000727 4.3e-13 77.8 66 54.5
Aqoxy2G00293 Aquilegia oxysepala HOM05D000677 ORTHO05D000727 5.7e-13 77.4 75 56.0
Psat0s3281g0040 Pisum sativum HOM05D000677 ORTHO05D000727 5.7e-13 77.4 70 55.7
Phvul.011G014900 Phaseolus vulgaris HOM05D000677 ORTHO05D000727 9.6e-13 76.6 82 48.8
Atru.chr11.2501 Acer truncatum HOM05D000677 ORTHO05D000727 2.8e-12 75.1 79 49.4
Cfa010853 Carpinus fangiana HOM05D000677 ORTHO05D000727 8.2e-12 73.6 70 51.4
HanXRQChr01g0016411 Helianthus annuus HOM05D000677 ORTHO05D000727 1.1e-11 73.2 67 58.2
ATR0721G131 Amborella trichopoda HOM05D000677 ORTHO05D000727 2.4e-11 72.0 66 57.6
ECA248G1819 Erigeron canadensis HOM05D000006 ORTHO05D000091 3.1e-11 71.6 68 54.4
Cfa010852 Carpinus fangiana HOM05D000677 ORTHO05D000727 5.3e-11 70.9 71 54.9
HanXRQChr13g0403851 Helianthus annuus HOM05D000677 ORTHO05D000727 1.2e-10 69.7 67 56.7
Lsat_1_v5_gn_1_98020 Lactuca sativa HOM05D000677 ORTHO05D000727 2.6e-10 68.6 80 46.2
AUR62037237 Chenopodium quinoa HOM05D000677 ORTHO05D000727 3.4e-10 68.2 75 45.3
SEGI_40315 Sequoiadendron giganteum HOM05D000677 ORTHO05D000727 3.4e-10 68.2 72 47.2
Sc10g0004250 Simmondsia chinensis HOM05D000677 ORTHO05D000727 5.8e-10 67.4 73 52.1
Os01g0800500 Oryza sativa ssp. japonica HOM05D000677 ORTHO05D000727 1.0e-09 66.6 79 44.3
SEGI_15600 Sequoiadendron giganteum HOM05D000677 ORTHO05D000727 1.3e-09 66.2 64 48.4
HPP92_016885 Vanilla planifolia HOM05D000677 ORTHO05D000727 1.3e-09 66.2 79 46.8
SEGI_03563 Sequoiadendron giganteum HOM05D000677 ORTHO05D000727 1.7e-09 65.9 62 50.0
SGA_v2.0_scaffold158G37455 Striga asiatica HOM05D000677 ORTHO05D000727 1.7e-09 65.9 64 51.6
SEGI_19673 Sequoiadendron giganteum HOM05D000677 ORTHO05D000727 2.2e-09 65.5 61 50.8
Zm00001eb369470 Zea mays HOM05D000677 ORTHO05D000727 2.9e-09 65.1 71 52.1
HPP92_016886 Vanilla planifolia HOM05D000677 ORTHO05D000727 5.0e-09 64.3 76 42.1
EL10Ac2g02866 Beta vulgaris HOM05D000677 ORTHO05D000727 1.4e-08 62.8 73 45.2
Nitab4.5_0006307g0050 Nicotiana tabacum HOM05D000677 ORTHO05D000727 1.2e-07 59.7 78 43.6
Nitab4.5_0001029g0090 Nicotiana tabacum HOM05D000677 ORTHO05D000727 1.6e-07 59.3 78 42.3
unitig_62.g23944 Utricularia gibba HOM05D000677 ORTHO05D000727 7.9e-07 57.0 72 43.1
Hund15709 Selenicereus undatus HOM05D000677 ORTHO05D000727 1.0e-06 56.6 64 45.3
Mapoly0014s0160 Marchantia polymorpha HOM05D000677 ORTHO05D000727 1.3e-06 56.2 63 41.3
AUR62037236 Chenopodium quinoa HOM05D000677 ORTHO05D000727 8.7e-06 53.5 59 49.2


User provided reference genes

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