Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c33497.2 Carica papaya HOM05D003118 ORTHO05D003618 5.5e-33 143.7 70 100.0
Manes.02G016600 Manihot esculenta HOM05D003118 ORTHO05D003618 8.2e-21 103.2 59 76.3
COL.COLO4_08355 Corchorus olitorius HOM05D003118 ORTHO05D003618 1.1e-20 102.8 58 79.3
Thecc.03G287000 Theobroma cacao HOM05D003118 ORTHO05D003618 1.8e-20 102.1 59 78.0
Eucgr.E00782 Eucalyptus grandis HOM05D003118 ORTHO05D003618 4.1e-20 100.9 59 74.6
FvH4_5g03250 Fragaria vesca HOM05D003118 ORTHO05D003618 5.3e-20 100.5 59 74.6
PGR042G1679 Punica granatum HOM05D003118 ORTHO05D003618 5.3e-20 100.5 57 78.9
Sabra03G0095300 Salix brachista HOM05D003118 ORTHO05D003618 5.3e-20 100.5 58 75.9
Gohir.D08G134400 Gossypium hirsutum HOM05D003118 ORTHO05D003618 6.9e-20 100.1 59 76.3
Gorai.004G137500 Gossypium raimondii HOM05D003118 ORTHO05D003618 6.9e-20 100.1 59 76.3
FAN13G0863 Fragaria x ananassa HOM05D003118 ORTHO05D003618 9.1e-20 99.8 59 74.6
Aqoxy7G00197 Aquilegia oxysepala HOM05D003118 ORTHO05D003618 2.0e-19 98.6 57 75.4
Duzib205G0707 Durio zibethinus HOM05D003118 ORTHO05D003618 2.0e-19 98.6 59 74.6
Lalb_Chr09g0320801 Lupinus albus HOM05D003118 ORTHO05D003618 2.0e-19 98.6 59 71.2
CiPaw.11G129400 Carya illinoinensis HOM05D003118 ORTHO05D003618 2.6e-19 98.2 59 74.6
Potri.003G133000 Populus trichocarpa HOM05D003118 ORTHO05D003618 2.6e-19 98.2 58 72.4
DCAR_004609 Daucus carota HOM05D003118 ORTHO05D003618 3.4e-19 97.8 59 71.2
LjContig00312_ERROPOS870357g0013212 Lotus japonicus HOM05D003118 ORTHO05D003618 3.4e-19 97.8 59 71.2
TAR629G1012 Trochodendron aralioides HOM05D003118 ORTHO05D003618 3.4e-19 97.8 59 72.9
FAN18G4078 Fragaria x ananassa HOM05D003118 ORTHO05D003618 4.5e-19 97.4 59 72.9
CiPaw.12G088800 Carya illinoinensis HOM05D003118 ORTHO05D003618 5.9e-19 97.1 59 72.9
Cc08_g15310 Coffea canephora HOM05D003118 ORTHO05D003618 7.7e-19 96.7 59 67.8
Prupe.5G107000 Prunus persica HOM05D003118 ORTHO05D003618 7.7e-19 96.7 59 72.9
Ca_24533_v3 Cicer arietinum L. HOM05D003118 ORTHO05D003618 1.0e-18 96.3 59 71.2
FAN04G2035 Fragaria x ananassa HOM05D003118 ORTHO05D003618 1.0e-18 96.3 59 71.2
FAN04G2118 Fragaria x ananassa HOM05D003118 ORTHO05D003618 1.0e-18 96.3 59 71.2
FAN08G3653 Fragaria x ananassa HOM05D003118 ORTHO05D003618 1.0e-18 96.3 59 71.2
Gohir.A08G114000 Gossypium hirsutum HOM05D003118 ORTHO05D003618 1.0e-18 96.3 59 72.9
Psat2g183920 Pisum sativum HOM05D003118 ORTHO05D003618 1.0e-18 96.3 59 71.2
RcHm_v2.0_Chr7g0196521 Rosa chinensis HOM05D003118 ORTHO05D003618 1.0e-18 96.3 59 72.9
TWI81G0015 Tripterygium wilfordii HOM05D003118 ORTHO05D003618 1.3e-18 95.9 58 72.4
Dinv38896 Davidia involucrata HOM05D003118 ORTHO05D003618 2.2e-18 95.1 59 71.2
TPR.G6616 Trifolium pratense HOM05D003118 ORTHO05D003618 2.2e-18 95.1 59 71.2
GSVIVG01019423001 Vitis vinifera HOM05D003118 ORTHO05D003618 2.2e-18 95.1 59 69.5
arahy.Tifrunner.gnm1.ann1.78DXCF Arachis hypogaea HOM05D003118 ORTHO05D003618 2.9e-18 94.7 59 71.2
CANSAT21G1093 Cannabis sativa HOM05D003118 ORTHO05D003618 2.9e-18 94.7 59 67.8
Haze_08746 Corylus avellana HOM05D003118 ORTHO05D003618 3.8e-18 94.4 59 71.2
Haze_08750 Corylus avellana HOM05D003118 ORTHO05D003618 3.8e-18 94.4 59 71.2
DCAR_000636 Daucus carota HOM05D003118 ORTHO05D003618 3.8e-18 94.4 59 67.8
Glyma.01G222500 Glycine max HOM05D003118 ORTHO05D003618 3.8e-18 94.4 59 71.2
TAR375G0293 Trochodendron aralioides HOM05D003118 ORTHO05D003618 3.8e-18 94.4 58 70.7
LjContig00312_ERROPOS870357g0002156 Lotus japonicus HOM05D003118 ORTHO05D003618 5.0e-18 94.0 59 72.9
QL02p033293 Quercus lobata HOM05D003118 ORTHO05D003618 5.0e-18 94.0 59 69.5
Cfa012251 Carpinus fangiana HOM05D003118 ORTHO05D003618 8.5e-18 93.2 59 72.9
Dinv37591 Davidia involucrata HOM05D003118 ORTHO05D003618 8.5e-18 93.2 59 67.8
SHI07074 Sapria himalayana HOM05D003118 ORTHO05D003618 8.5e-18 93.2 58 69.0
arahy.Tifrunner.gnm1.ann1.9S2WM4 Arachis hypogaea HOM05D003118 ORTHO05D003618 1.1e-17 92.8 57 71.9
SEGI_33305 Sequoiadendron giganteum HOM05D003118 ORTHO05D003618 1.4e-17 92.4 59 69.5
Ciclev10024541m.g Citrus clementina HOM05D003118 ORTHO05D003618 1.9e-17 92.0 58 65.5
MBI07_g11721_MAGBIO Magnolia biondii HOM05D003118 ORTHO05D003618 1.9e-17 92.0 59 66.1
PSO266G0031 Papaver somniferum HOM05D003118 ORTHO05D003618 1.9e-17 92.0 59 61.0
Actinidia28342 Actinidia chinensis HOM05D003118 ORTHO05D003618 2.5e-17 91.7 59 67.8
CARHR287630 Cardamine hirsuta HOM05D003118 ORTHO05D003618 2.5e-17 91.7 59 67.8
PSO384G4267 Papaver somniferum HOM05D003118 ORTHO05D003618 2.5e-17 91.7 59 61.0
Atru.chr9.2107 Acer truncatum HOM05D003118 ORTHO05D003618 3.2e-17 91.3 59 66.1
AL7G47820 Arabidopsis lyrata HOM05D003118 ORTHO05D003618 3.2e-17 91.3 59 67.8
AT5G41580 Arabidopsis thaliana HOM05D003118 ORTHO05D003618 3.2e-17 91.3 59 67.8
Sed0003885 Sechium edule HOM05D003118 ORTHO05D003618 3.2e-17 91.3 58 70.7
Migut.E01210 Erythranthe guttata HOM05D003118 ORTHO05D003618 4.2e-17 90.9 59 67.8
MD14G1112600 Malus domestica HOM05D003118 ORTHO05D003618 4.2e-17 90.9 59 67.8
Nn6g32462 Nelumbo nucifera HOM05D003118 ORTHO05D003618 4.2e-17 90.9 57 70.2
PSO170G3062 Papaver somniferum HOM05D003118 ORTHO05D003618 4.2e-17 90.9 58 70.7
Phvul.002G160400 Phaseolus vulgaris HOM05D003118 ORTHO05D003618 4.2e-17 90.9 59 67.8
CANSAT21G0202 Cannabis sativa HOM05D003118 ORTHO05D003618 5.5e-17 90.5 58 67.2
Hund14265 Selenicereus undatus HOM05D003118 ORTHO05D003618 5.5e-17 90.5 59 66.1
THA.LOC104809363 Tarenaya hassleriana HOM05D003118 ORTHO05D003618 5.5e-17 90.5 59 71.2
Sc01g0009900 Simmondsia chinensis HOM05D003118 ORTHO05D003618 7.2e-17 90.1 59 64.4
THA.LOC104823601 Tarenaya hassleriana HOM05D003118 ORTHO05D003618 7.2e-17 90.1 59 67.8
TWI14G1154 Tripterygium wilfordii HOM05D003118 ORTHO05D003618 9.4e-17 89.7 58 67.2
MD06G1091800 Malus domestica HOM05D003118 ORTHO05D003618 1.2e-16 89.4 59 66.1
SalBow8G1076 Salvia bowleyana HOM05D003118 ORTHO05D003618 1.2e-16 89.4 59 64.4
ATR0721G124 Amborella trichopoda HOM05D003118 ORTHO05D003618 1.6e-16 89.0 59 66.1
PSO063G6388 Papaver somniferum HOM05D003118 ORTHO05D003618 1.6e-16 89.0 58 69.0
CSS0022485 Camellia sinensis var. sinensis HOM05D003118 ORTHO05D003618 2.1e-16 88.6 59 66.1
SGA_v2.0_scaffold144G35901 Striga asiatica HOM05D003118 ORTHO05D003618 2.1e-16 88.6 58 63.8
HanXRQChr06g0166221 Helianthus annuus HOM05D003118 ORTHO05D003618 3.6e-16 87.8 59 64.4
Aa31LG9G490 Aethionema arabicum HOM05D003118 ORTHO05D003618 4.7e-16 87.4 59 64.4
CiPaw.01G067900 Carya illinoinensis HOM05D003118 ORTHO05D003618 4.7e-16 87.4 59 66.1
CsaV3_5G002370 Cucumis sativus L. HOM05D003118 ORTHO05D003618 4.7e-16 87.4 58 67.2
ECA246G2781 Erigeron canadensis HOM05D003118 ORTHO05D003618 4.7e-16 87.4 58 67.2
Glyma.11G020900 Glycine max HOM05D003118 ORTHO05D003618 4.7e-16 87.4 59 66.1
BcaB02g07884 Brassica carinata HOM05D003118 ORTHO05D003618 6.1e-16 87.0 59 64.4
BcaC02g08950 Brassica carinata HOM05D003118 ORTHO05D003618 6.1e-16 87.0 59 64.4
BcaC08g44538 Brassica carinata HOM05D003118 ORTHO05D003618 6.1e-16 87.0 59 64.4
A07p20860 Brassica napus HOM05D003118 ORTHO05D003618 6.1e-16 87.0 59 64.4
C04p48560 Brassica napus HOM05D003118 ORTHO05D003618 6.1e-16 87.0 59 64.4
C06p20020 Brassica napus HOM05D003118 ORTHO05D003618 6.1e-16 87.0 59 64.4
BolC4t26449H Brassica oleracea HOM05D003118 ORTHO05D003618 6.1e-16 87.0 59 64.4
BolC6t37186H Brassica oleracea HOM05D003118 ORTHO05D003618 6.1e-16 87.0 59 64.4
BraA07t29773Z Brassica rapa HOM05D003118 ORTHO05D003618 6.1e-16 87.0 59 64.4
Sp7g00460 Schrenkiella parvula HOM05D003118 ORTHO05D003618 6.1e-16 87.0 59 66.1
MSTRG.13862 Avicennia marina HOM05D003118 ORTHO05D003618 8.0e-16 86.7 59 64.4
BcaB06g27629 Brassica carinata HOM05D003118 ORTHO05D003618 8.0e-16 86.7 59 64.4
Cfa003868 Carpinus fangiana HOM05D003118 ORTHO05D003618 8.0e-16 86.7 59 62.7
Thhalv10027658m.g Eutrema salsugineum HOM05D003118 ORTHO05D003618 8.0e-16 86.7 59 66.1
Hma1.2p1_0216F.1_g091120 Hydrangea macrophylla HOM05D003118 ORTHO05D003618 8.0e-16 86.7 59 64.4
Os06g0164000 Oryza sativa ssp. japonica HOM05D003118 ORTHO05D003618 8.0e-16 86.7 58 65.5
Haze_15568 Corylus avellana HOM05D003118 ORTHO05D003618 1.0e-15 86.3 59 62.7
HanXRQChr17g0533861 Helianthus annuus HOM05D003118 ORTHO05D003618 1.0e-15 86.3 58 65.5
Oeu042365.1 Olea europaea HOM05D003118 ORTHO05D003618 1.0e-15 86.3 59 62.7
A04p14690 Brassica napus HOM05D003118 ORTHO05D003618 1.4e-15 85.9 57 66.7
Carub.0007s3389 Capsella rubella HOM05D003118 ORTHO05D003618 1.4e-15 85.9 59 64.4
Medtr5g009920 Medicago truncatula HOM05D003118 ORTHO05D003618 1.4e-15 85.9 59 64.4
VMungo1215G2430 Vigna mungo HOM05D003118 ORTHO05D003618 1.8e-15 85.5 59 64.4
BraA04t17109Z Brassica rapa HOM05D003118 ORTHO05D003618 2.3e-15 85.1 57 66.7
MBI01_g15047_MAGBIO Magnolia biondii HOM05D003118 ORTHO05D003618 2.3e-15 85.1 61 62.3
MELO3C005717.2 Cucumis melo HOM05D003118 ORTHO05D003618 3.0e-15 84.7 57 68.4
QL04p055623 Quercus lobata HOM05D003118 ORTHO05D003618 3.0e-15 84.7 59 62.7
Lsat_1_v5_gn_3_11501 Lactuca sativa HOM05D003118 ORTHO05D003618 3.9e-15 84.3 59 61.0
EL10Ac5g12842 Beta vulgaris HOM05D003118 ORTHO05D003618 5.2e-15 84.0 58 63.8
vmacro11412 Vaccinium macrocarpon HOM05D003118 ORTHO05D003618 6.7e-15 83.6 59 61.0
HPP92_000528 Vanilla planifolia HOM05D003118 ORTHO05D003618 6.7e-15 83.6 59 61.0
Sed0011553 Sechium edule HOM05D003118 ORTHO05D003618 8.8e-15 83.2 58 63.8
A08p34920 Brassica napus HOM05D003118 ORTHO05D003618 1.1e-14 82.8 56 69.6
BraA08t35403Z Brassica rapa HOM05D003118 ORTHO05D003618 1.1e-14 82.8 56 69.6
TPR.G24280 Trifolium pratense HOM05D003118 ORTHO05D003618 1.1e-14 82.8 59 59.3
C08p12330 Brassica napus HOM05D003118 ORTHO05D003618 1.5e-14 82.4 56 67.9
HanXRQChr13g0416081 Helianthus annuus HOM05D003118 ORTHO05D003618 1.5e-14 82.4 59 64.4
BolC8t48874H Brassica oleracea HOM05D003118 ORTHO05D003618 2.0e-14 82.0 56 67.9
Lsat_1_v5_gn_7_2680 Lactuca sativa HOM05D003118 ORTHO05D003618 2.0e-14 82.0 59 59.3
Peaxi162Scf00102g01644 Petunia axillaris HOM05D003118 ORTHO05D003618 2.0e-14 82.0 58 62.1
GSVIVG01026973001 Vitis vinifera HOM05D003118 ORTHO05D003618 2.6e-14 81.6 59 59.3
Zm00001eb375680 Zea mays HOM05D003118 ORTHO05D003618 2.6e-14 81.6 58 56.9
BcaB03g13535 Brassica carinata HOM05D003118 ORTHO05D003618 3.3e-14 81.3 56 67.9
Carub.0001s0824 Capsella rubella HOM05D003118 ORTHO05D003618 3.3e-14 81.3 56 66.1
ECA240G3271 Erigeron canadensis HOM05D000115 ORTHO05D003618 3.3e-14 81.3 58 58.6
AUR62019759 Chenopodium quinoa HOM05D003118 ORTHO05D003618 4.4e-14 80.9 59 59.3
PSO266G0003 Papaver somniferum HOM05D003118 ORTHO05D003618 4.4e-14 80.9 59 55.9
SGA_v2.0_scaffold173G39132 Striga asiatica HOM05D003118 ORTHO05D003618 4.4e-14 80.9 59 55.9
Hund11431 Selenicereus undatus HOM05D003118 ORTHO05D003618 5.7e-14 80.5 64 59.4
MBI18_g41292_MAGBIO Magnolia biondii HOM05D003118 ORTHO05D003618 7.4e-14 80.1 62 58.1
GSVIVG01026971001 Vitis vinifera HOM05D003118 ORTHO05D003618 7.4e-14 80.1 59 57.6
AT1G08910 Arabidopsis thaliana HOM05D003118 ORTHO05D003618 1.3e-13 79.3 56 62.5
C08p49770 Brassica napus HOM05D003118 ORTHO05D003618 2.2e-13 78.6 56 62.5
Thhalv10007035m.g Eutrema salsugineum HOM05D003118 ORTHO05D003618 2.2e-13 78.6 56 64.3
Lsat_1_v5_gn_6_84940 Lactuca sativa HOM05D003118 ORTHO05D003618 2.2e-13 78.6 58 62.1
AL1G19340 Arabidopsis lyrata HOM05D003118 ORTHO05D003618 2.8e-13 78.2 56 62.5
BcaC07g41918 Brassica carinata HOM05D003118 ORTHO05D003618 2.8e-13 78.2 56 62.5
BolC8t52504H Brassica oleracea HOM05D003118 ORTHO05D003618 2.8e-13 78.2 56 62.5
CDE10G1109 Ceratophyllum demersum HOM05D003118 ORTHO05D003618 2.8e-13 78.2 59 52.5
Cc02_g38610 Coffea canephora HOM05D003118 ORTHO05D003618 2.8e-13 78.2 59 59.3
HPP92_002895 Vanilla planifolia HOM05D003118 ORTHO05D003618 3.7e-13 77.8 59 55.9
AUR62010758 Chenopodium quinoa HOM05D003118 ORTHO05D003618 4.8e-13 77.4 59 57.6
Rhsim02G0236100 Rhododendron simsii HOM05D003118 ORTHO05D003618 8.2e-13 76.6 63 58.7
Solyc08g008130.4 Solanum lycopersicum HOM05D003118 ORTHO05D003618 1.1e-12 76.3 59 55.9
HPP92_002884 Vanilla planifolia HOM05D003118 ORTHO05D003618 1.1e-12 76.3 59 54.2
A09p65700 Brassica napus HOM05D003118 ORTHO05D003618 1.4e-12 75.9 56 58.9
BraA09t41913Z Brassica rapa HOM05D003118 ORTHO05D003618 1.4e-12 75.9 56 58.9
Nitab4.5_0002231g0040 Nicotiana tabacum HOM05D003118 ORTHO05D003618 1.8e-12 75.5 59 55.9
Sopen08g003990 Solanum pennellii HOM05D003118 ORTHO05D003618 1.8e-12 75.5 59 54.2
CARHR008810 Cardamine hirsuta HOM05D003118 ORTHO05D003618 3.1e-12 74.7 60 61.7
Ah.12g052020 Amaranthus hybridus HOM05D003118 ORTHO05D003618 4.1e-12 74.3 59 54.2
Nitab4.5_0005339g0020 Nicotiana tabacum HOM05D003118 ORTHO05D003618 4.1e-12 74.3 59 54.2
FAN11G3071 Fragaria x ananassa HOM05D003118 ORTHO05D003618 7.0e-12 73.6 77 50.6
FAN11G3379 Fragaria x ananassa HOM05D003118 ORTHO05D003618 7.0e-12 73.6 77 50.6
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 9.1e-12 73.2 71 53.5
HanXRQChr04g0120811 Helianthus annuus HOM05D003118 ORTHO05D003618 9.1e-12 73.2 59 54.2
A06p05760 Brassica napus HOM05D003118 ORTHO05D003618 1.6e-11 72.4 59 55.9
BraA06t23787Z Brassica rapa HOM05D003118 ORTHO05D003618 1.6e-11 72.4 59 55.9
AagrBONN_evm.TU.Sc2ySwM_228.3604 Anthoceros agrestis HOM05D003118 ORTHO05D003618 2.0e-11 72.0 57 50.9
Aa31sc17G150 Aethionema arabicum HOM05D003118 ORTHO05D003618 2.6e-11 71.6 59 54.2
ECA236G4268 Erigeron canadensis HOM05D003118 ORTHO05D003618 2.6e-11 71.6 69 47.8
C05p06950 Brassica napus HOM05D003118 ORTHO05D003618 6.5e-10 67.0 54 57.4
Nitab4.5_0000915g0080 Nicotiana tabacum HOM05D003118 ORTHO05D003618 8.5e-10 66.6 59 54.2
BolC5t29453H Brassica oleracea HOM05D003118 ORTHO05D032428 1.5e-09 65.9 52 57.7
ECA236G1529 Erigeron canadensis HOM05D003118 ORTHO05D003618 1.5e-09 65.9 59 47.5
Sp1g07530 Schrenkiella parvula HOM05D003118 ORTHO05D003618 2.5e-09 65.1 55 54.5
Mapoly0002s0236 Marchantia polymorpha HOM05D003118 ORTHO05D003618 3.2e-09 64.7 60 45.0
BcaB07g34111 Brassica carinata HOM05D003118 ORTHO05D003618 7.2e-09 63.5 54 53.7
Solyc01g095130.4 Solanum lycopersicum HOM05D003118 ORTHO05D003618 9.4e-09 63.2 59 55.9
Peaxi162Scf00020g01526 Petunia axillaris HOM05D003118 ORTHO05D003618 1.6e-08 62.4 59 52.5
Pp3c25_1090 Physcomitrium patens HOM05D003118 ORTHO05D003618 1.6e-08 62.4 76 40.8
TPR.G24909 Trifolium pratense HOM05D003118 ORTHO05D003618 2.7e-08 61.6 46 56.5
Sopen01g038920 Solanum pennellii HOM05D003118 ORTHO05D003618 3.6e-08 61.2 59 54.2
MBI12_g01744_MAGBIO Magnolia biondii HOM05D003118 ORTHO05D003618 6.1e-08 60.5 47 57.4
ClCG01G002310 Citrullus lanatus HOM05D003118 ORTHO05D003618 4.4e-06 54.3 30 80.0


User provided reference genes

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