Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c33279 Carica papaya HOM05D004825 ORTHO05D005415 7.9e-45 183.3 89 100.0
CsaV3_2G010380 Cucumis sativus L. HOM05D004825 ORTHO05D005415 2.9e-31 138.3 89 70.8
Sed0020944 Sechium edule HOM05D004825 ORTHO05D005415 6.5e-31 137.1 89 70.8
QL02p047766 Quercus lobata HOM05D004825 ORTHO05D005415 2.5e-30 135.2 88 71.6
MELO3C008585.2 Cucumis melo HOM05D004825 ORTHO05D005415 3.2e-30 134.8 89 68.5
CiPaw.07G074800 Carya illinoinensis HOM05D004825 ORTHO05D005415 7.2e-30 133.7 89 69.7
FAN14G5305 Fragaria x ananassa HOM05D004825 ORTHO05D005415 2.1e-29 132.1 89 69.7
Cfa006284 Carpinus fangiana HOM05D004825 ORTHO05D005415 2.7e-29 131.7 89 67.4
Atru.chr12.2135 Acer truncatum HOM05D004825 ORTHO05D005415 4.7e-29 131.0 88 68.2
RcHm_v2.0_Chr3g0448251 Rosa chinensis HOM05D004825 ORTHO05D005415 4.7e-29 131.0 89 67.4
ClCG11G007410 Citrullus lanatus HOM05D004825 ORTHO05D005415 8.0e-29 130.2 94 67.0
FAN05G3281 Fragaria x ananassa HOM05D004825 ORTHO05D005415 1.4e-28 129.4 89 67.4
FvH4_6g00770 Fragaria vesca HOM05D004825 ORTHO05D005415 2.3e-28 128.6 89 68.5
Dinv09864 Davidia involucrata HOM05D004825 ORTHO05D005415 5.2e-28 127.5 89 67.4
FAN09G1822 Fragaria x ananassa HOM05D004825 ORTHO05D005415 5.2e-28 127.5 89 66.3
FAN02G3908 Fragaria x ananassa HOM05D004825 ORTHO05D005415 6.7e-28 127.1 89 66.3
Peaxi162Scf01013g00123 Petunia axillaris HOM05D004825 ORTHO05D005415 6.7e-28 127.1 89 65.2
CANSAT54G0263 Cannabis sativa HOM05D004825 ORTHO05D005415 2.0e-27 125.6 89 64.0
Ciclev10007912m.g Citrus clementina HOM05D004825 ORTHO05D005415 2.0e-27 125.6 88 71.6
Actinidia06813 Actinidia chinensis HOM05D004825 ORTHO05D005415 2.6e-27 125.2 89 66.3
TWI59G0982 Tripterygium wilfordii HOM05D004825 ORTHO05D005415 4.4e-27 124.4 87 67.8
Nitab4.5_0000167g0020 Nicotiana tabacum HOM05D004825 ORTHO05D005415 5.7e-27 124.0 89 61.8
Nitab4.5_0004158g0040 Nicotiana tabacum HOM05D004825 ORTHO05D005415 7.5e-27 123.6 89 61.8
vmacro12851 Vaccinium macrocarpon HOM05D004825 ORTHO05D005415 1.7e-26 122.5 89 66.3
GSVIVG01019145001 Vitis vinifera HOM05D004825 ORTHO05D005415 1.7e-26 122.5 89 67.4
CAN.G1086.4 Capsicum annuum HOM05D004825 ORTHO05D005415 2.2e-26 122.1 89 61.8
Manes.09G184100 Manihot esculenta HOM05D004825 ORTHO05D005415 3.7e-26 121.3 89 62.9
Potri.013G087950 Populus trichocarpa HOM05D004825 ORTHO05D005415 4.8e-26 120.9 89 62.9
Sabra13G0069900 Salix brachista HOM05D004825 ORTHO05D005415 6.3e-26 120.6 89 64.0
Sc06g0005090 Simmondsia chinensis HOM05D004825 ORTHO05D005415 6.3e-26 120.6 89 59.6
PGSC0003DMG400018032 Solanum tuberosum HOM05D004825 ORTHO05D005415 6.3e-26 120.6 89 61.8
Thecc.05G205800 Theobroma cacao HOM05D004825 ORTHO05D005415 6.3e-26 120.6 89 64.0
Sopen11g009760 Solanum pennellii HOM05D004825 ORTHO05D005415 1.1e-25 119.8 89 59.6
MD12G1258300 Malus domestica HOM05D004825 ORTHO05D005415 2.4e-25 118.6 92 64.1
PGSC0003DMG401000916 Solanum tuberosum HOM05D004825 ORTHO05D005415 2.4e-25 118.6 87 60.9
Rhsim10G0138100 Rhododendron simsii HOM05D004825 ORTHO05D005415 3.1e-25 118.2 89 62.9
Solyc11g013080.3 Solanum lycopersicum HOM05D004825 ORTHO05D005415 4.1e-25 117.9 89 58.4
Duzib128G0048 Durio zibethinus HOM05D004825 ORTHO05D005415 9.1e-25 116.7 89 61.8
Solyc11g018740.3 Solanum lycopersicum HOM05D004825 ORTHO05D005415 9.1e-25 116.7 89 58.4
PGR119G2407 Punica granatum HOM05D004825 ORTHO05D005415 2.0e-24 115.5 88 62.5
TAR374G0592 Trochodendron aralioides HOM05D004825 ORTHO05D005415 2.7e-24 115.2 85 63.5
Gohir.D09G053068 Gossypium hirsutum HOM05D004825 ORTHO05D005415 3.5e-24 114.8 89 61.8
Gorai.006G054700 Gossypium raimondii HOM05D004825 ORTHO05D005415 3.5e-24 114.8 89 61.8
PGSC0003DMG400014032 Solanum tuberosum HOM05D004825 ORTHO05D005415 3.5e-24 114.8 87 59.8
Prupe.6G359000 Prunus persica HOM05D004825 ORTHO05D005415 4.5e-24 114.4 91 61.5
RcHm_v2.0_Chr3g0448211 Rosa chinensis HOM05D004825 ORTHO05D005415 7.7e-24 113.6 78 67.9
Gohir.A09G053766 Gossypium hirsutum HOM05D004825 ORTHO05D005415 1.0e-23 113.2 89 60.7
Hma1.2p1_0220F.1_g093020 Hydrangea macrophylla HOM05D004825 ORTHO05D005415 1.7e-23 112.5 89 59.6
Cc09_g03390 Coffea canephora HOM05D004825 ORTHO05D005415 6.5e-23 110.5 88 59.1
COL.COLO4_07810 Corchorus olitorius HOM05D004825 ORTHO05D005415 8.5e-23 110.2 89 57.3
Haze_04525 Corylus avellana HOM05D004825 ORTHO05D005415 8.5e-23 110.2 74 67.6
PGR119G0192 Punica granatum HOM05D004825 ORTHO05D005415 8.5e-23 110.2 75 66.7
Oeu023621.1 Olea europaea HOM05D004825 ORTHO05D005415 5.5e-22 107.5 87 57.5
Ah.06g195620 Amaranthus hybridus HOM05D004825 ORTHO05D005415 7.2e-22 107.1 89 57.3
AL5G22510 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 7.2e-22 107.1 76 57.9
AL5G22530 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 7.2e-22 107.1 76 57.9
Migut.I01185 Erythranthe guttata HOM05D004825 ORTHO05D005415 3.6e-21 104.8 85 54.1
Lalb_Chr19g0126781 Lupinus albus HOM05D004825 ORTHO05D005415 6.1e-21 104.0 85 55.3
EL10Ac4g09418 Beta vulgaris HOM05D004825 ORTHO05D005415 8.0e-21 103.6 89 53.9
DCAR_003341 Daucus carota HOM05D004825 ORTHO05D005415 8.0e-21 103.6 89 57.3
AL2G19720 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 1.0e-20 103.2 89 55.1
THA.LOC104814783 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 1.4e-20 102.8 72 59.7
CARHR104500 Cardamine hirsuta HOM05D004825 ORTHO05D005415 1.8e-20 102.4 73 56.2
Carub.0005s1010 Capsella rubella HOM05D004825 ORTHO05D005415 2.3e-20 102.1 78 52.6
Nn3g16227 Nelumbo nucifera HOM05D004825 ORTHO05D005415 2.3e-20 102.1 73 63.0
AT1G65080 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 3.0e-20 101.7 89 53.9
Eucgr.B01387 Eucalyptus grandis HOM05D004825 ORTHO05D005415 3.0e-20 101.7 89 58.4
AT3G44370 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 5.2e-20 100.9 73 56.2
arahy.Tifrunner.gnm1.ann1.T0KW2L Arachis hypogaea HOM05D004825 ORTHO05D005415 5.2e-20 100.9 92 51.1
BcaC01g02045 Brassica carinata HOM05D004825 ORTHO05D005415 5.2e-20 100.9 78 52.6
C03p69210 Brassica napus HOM05D004825 ORTHO05D005415 5.2e-20 100.9 78 52.6
BolC3t19174H Brassica oleracea HOM05D004825 ORTHO05D005415 5.2e-20 100.9 78 52.6
Sp5g16820 Schrenkiella parvula HOM05D004825 ORTHO05D005415 6.8e-20 100.5 76 53.9
SalBow6G3714 Salvia bowleyana HOM05D004825 ORTHO05D005415 1.2e-19 99.8 79 57.0
Glyma.18G240200 Glycine max HOM05D004825 ORTHO05D005415 1.5e-19 99.4 85 54.1
SGA_v2.0_scaffold122G33281 Striga asiatica HOM05D004825 ORTHO05D005415 1.5e-19 99.4 85 55.3
Thhalv10010266m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 2.0e-19 99.0 70 57.1
Thhalv10022463m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 2.0e-19 99.0 89 52.8
A06p22020 Brassica napus HOM05D004825 ORTHO05D005415 2.6e-19 98.6 78 52.6
BraA06t25290Z Brassica rapa HOM05D004825 ORTHO05D005415 2.6e-19 98.6 78 52.6
Phvul.008G056000 Phaseolus vulgaris HOM05D004825 ORTHO05D005415 2.6e-19 98.6 89 56.2
arahy.Tifrunner.gnm1.ann1.B3BVJM Arachis hypogaea HOM05D004825 ORTHO05D005415 3.4e-19 98.2 91 50.5
Lj1g0016449 Lotus japonicus HOM05D004825 ORTHO05D005415 3.4e-19 98.2 85 52.9
MSTRG.10886 Avicennia marina HOM05D004825 ORTHO05D005415 4.4e-19 97.8 85 55.3
BcaB01g01166 Brassica carinata HOM05D004825 ORTHO05D005415 4.4e-19 97.8 90 47.8
Carub.0002s1042 Capsella rubella HOM05D004825 ORTHO05D005415 4.4e-19 97.8 89 52.8
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 5.7e-19 97.4 73 56.2
CARHR056570 Cardamine hirsuta HOM05D004825 ORTHO05D005415 7.5e-19 97.1 89 50.6
Sp5g19610 Schrenkiella parvula HOM05D004825 ORTHO05D005415 1.3e-18 96.3 89 51.7
SpUn0108_0010 Schrenkiella parvula HOM05D004825 ORTHO05D005415 1.3e-18 96.3 89 51.7
THA.LOC104805710 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 1.7e-18 95.9 85 52.9
BcaB05g24081 Brassica carinata HOM05D004825 ORTHO05D005415 2.2e-18 95.5 89 51.7
Aa31LG2G2270 Aethionema arabicum HOM05D004825 ORTHO05D005415 2.8e-18 95.1 89 50.6
BcaC03g14674 Brassica carinata HOM05D004825 ORTHO05D005415 2.8e-18 95.1 89 51.7
A02p13010 Brassica napus HOM05D004825 ORTHO05D005415 2.8e-18 95.1 89 51.7
C02p21130 Brassica napus HOM05D004825 ORTHO05D005415 2.8e-18 95.1 89 51.7
BolC2t08253H Brassica oleracea HOM05D004825 ORTHO05D005415 2.8e-18 95.1 89 51.7
BraA02t06357Z Brassica rapa HOM05D004825 ORTHO05D005415 2.8e-18 95.1 89 51.7
Aqoxy1G01799 Aquilegia oxysepala HOM05D004825 ORTHO05D005415 6.3e-18 94.0 74 59.5
HanXRQChr01g0025761 Helianthus annuus HOM05D004825 ORTHO05D005415 6.3e-18 94.0 89 47.2
Potri.009G121800 Populus trichocarpa HOM05D004825 ORTHO05D005415 6.3e-18 94.0 69 63.8
Sabra09G0094100 Salix brachista HOM05D004825 ORTHO05D005415 6.3e-18 94.0 69 63.8
TPR.G29414 Trifolium pratense HOM05D004825 ORTHO05D005415 6.3e-18 94.0 85 51.8
Medtr7g079500 Medicago truncatula HOM05D004825 ORTHO05D005415 8.3e-18 93.6 85 50.6
unitig_32.g11006 Utricularia gibba HOM05D004825 ORTHO05D005415 8.3e-18 93.6 85 49.4
VMungo1383G1726 Vigna mungo HOM05D004825 ORTHO05D005415 1.1e-17 93.2 89 52.8
Ca_07963_v3 Cicer arietinum L. HOM05D004825 ORTHO05D005415 1.4e-17 92.8 74 56.8
Psat3g104280 Pisum sativum HOM05D004825 ORTHO05D005415 1.4e-17 92.8 85 50.6
PSO478G4613 Papaver somniferum HOM05D004825 ORTHO05D005415 5.4e-17 90.9 74 56.8
ECA233G4148 Erigeron canadensis HOM05D004825 ORTHO05D005415 7.0e-17 90.5 89 44.9
Lsat_1_v5_gn_8_2080 Lactuca sativa HOM05D004825 ORTHO05D005415 9.1e-17 90.1 90 50.0
SalBow6G0845 Salvia bowleyana HOM05D004825 ORTHO05D005415 1.2e-16 89.7 85 51.8
Hund07323 Selenicereus undatus HOM05D004825 ORTHO05D005415 1.7e-15 85.9 72 52.8
SEGI_16462 Sequoiadendron giganteum HOM05D004825 ORTHO05D005415 2.3e-15 85.5 69 53.6
PSO017G3896 Papaver somniferum HOM05D004825 ORTHO05D005415 3.8e-15 84.7 70 55.7
AUR62006702 Chenopodium quinoa HOM05D004825 ORTHO05D005415 6.6e-15 84.0 92 45.7
AUR62000357 Chenopodium quinoa HOM05D004825 ORTHO05D005415 4.2e-14 81.3 93 46.2
HPP92_007971 Vanilla planifolia HOM05D004825 ORTHO05D005415 7.2e-14 80.5 74 45.9
CDE02G0647 Ceratophyllum demersum HOM05D004825 ORTHO05D005415 3.6e-13 78.2 70 51.4
Zm00001eb375410 Zea mays HOM05D004825 ORTHO05D005415 4.4e-11 71.2 61 49.2
SGA_v2.0_scaffold71G24001 Striga asiatica HOM05D004825 ORTHO05D005415 9.8e-11 70.1 84 46.4
ATR0582G066 Amborella trichopoda HOM05D004825 ORTHO05D005415 2.8e-10 68.6 75 41.3
EL10Ac6g14361 Beta vulgaris HOM05D004825 ORTHO05D005415 1.4e-09 66.2 55 60.0
Nitab4.5_0000188g0370 Nicotiana tabacum HOM05D004825 ORTHO05D005415 8.6e-07 57.0 50 46.0


User provided reference genes

Program Settings