Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 2.1e-85 318.9 152 100.0
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 1.3e-55 219.9 157 69.4
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 4.2e-54 214.9 147 70.7
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 5.5e-54 214.5 158 69.0
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 5.5e-54 214.5 158 69.0
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 1.0e-52 210.3 148 66.9
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 3.0e-52 208.8 148 66.2
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 8.8e-52 207.2 145 67.6
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 1.1e-51 206.8 147 68.0
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 3.3e-51 205.3 148 66.9
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 2.2e-50 202.6 150 68.0
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.2e-50 202.6 146 65.8
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 3.1e-49 198.7 148 66.9
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 3.1e-49 198.7 148 63.5
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 9.1e-49 197.2 147 66.7
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 1.5e-48 196.4 163 62.0
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 2.0e-48 196.1 153 63.4
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 2.0e-48 196.1 146 65.1
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 2.6e-48 195.7 148 63.5
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 2.6e-48 195.7 148 63.5
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 3.4e-48 195.3 148 66.2
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 7.7e-48 194.1 146 66.4
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 1.0e-47 193.7 146 63.0
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 1.7e-47 193.0 159 61.6
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 2.2e-47 192.6 147 63.9
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 2.9e-47 192.2 148 64.9
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 6.5e-47 191.0 151 63.6
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 8.5e-47 190.7 146 63.7
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 3.2e-46 188.7 147 63.3
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 4.2e-46 188.3 148 61.5
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 5.5e-46 188.0 145 62.1
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 5.5e-46 188.0 146 63.7
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 7.2e-46 187.6 147 61.2
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 7.2e-46 187.6 147 63.9
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 7.2e-46 187.6 146 64.4
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 9.4e-46 187.2 163 58.9
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 1.6e-45 186.4 145 62.8
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 3.6e-45 185.3 161 57.8
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 3.6e-45 185.3 148 63.5
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 4.7e-45 184.9 148 60.8
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 4.7e-45 184.9 147 61.2
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 6.1e-45 184.5 146 61.0
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 7.9e-45 184.1 148 60.1
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 7.9e-45 184.1 146 62.3
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 7.9e-45 184.1 145 63.4
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 1.8e-44 183.0 149 62.4
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 1.5e-43 179.9 148 64.2
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 4.4e-43 178.3 168 51.8
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 7.4e-43 177.6 149 61.1
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 1.3e-42 176.8 181 54.7
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 3.7e-42 175.3 147 60.5
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 6.3e-42 174.5 146 55.5
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 1.4e-41 173.3 144 63.2
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 1.8e-41 172.9 150 58.0
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 1.8e-41 172.9 146 59.6
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 2.4e-41 172.6 150 57.3
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 3.1e-41 172.2 146 58.2
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 1.2e-40 170.2 155 57.4
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 5.9e-40 167.9 150 58.0
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 1.0e-39 167.2 146 58.2
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 1.7e-39 166.4 143 55.2
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 2.2e-39 166.0 146 58.9
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 2.9e-39 165.6 159 53.5
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 3.8e-39 165.2 157 52.9
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 5.0e-39 164.9 146 54.8
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 6.5e-39 164.5 150 56.7
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 8.5e-39 164.1 159 52.2
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 8.5e-39 164.1 150 57.3
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 1.1e-38 163.7 162 51.2
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.5e-38 163.3 150 58.0
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 1.9e-38 162.9 149 57.7
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 1.9e-38 162.9 166 50.6
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.5e-38 162.5 158 53.8
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 5.5e-38 161.4 158 54.4
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 5.5e-38 161.4 150 56.0
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 7.2e-38 161.0 145 60.7
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 1.6e-37 159.8 138 61.6
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 2.7e-37 159.1 163 50.3
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 4.7e-37 158.3 170 48.2
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 3.0e-36 155.6 163 48.5
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 3.0e-36 155.6 163 48.5
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 5.2e-36 154.8 146 52.7
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 8.8e-36 154.1 163 48.5
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 8.8e-36 154.1 163 48.5
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 8.8e-36 154.1 163 48.5
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 3.3e-35 152.1 196 43.9
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 7.7e-32 141.0 105 65.7
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 7.7e-32 141.0 236 39.8
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 1.0e-31 140.6 146 54.1
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.4e-28 130.2 164 43.9
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 1.4e-28 130.2 175 42.3
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 1.8e-28 129.8 191 40.8
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 3.0e-28 129.0 130 51.5
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 8.8e-28 127.5 134 52.2
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 7.5e-27 124.4 170 45.3
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 9.8e-27 124.0 116 56.9
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 4.1e-25 118.6 145 41.4
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 7.0e-25 117.9 131 51.9
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 1.6e-24 116.7 107 55.1
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 3.6e-21 105.5 106 53.8
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 3.6e-21 105.5 92 59.8
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 4.0e-20 102.1 151 39.1
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 2.7e-16 89.4 148 35.8
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 7.8e-16 87.8 161 33.5
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 8.6e-15 84.3 93 52.7
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 3.6e-13 79.0 52 61.5
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 4.0e-12 75.5 95 48.4
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 4.1e-09 65.5 31 90.3
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 5.4e-09 65.1 37 78.4
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 4.3e-06 55.5 65 36.9


User provided reference genes

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