Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c33136.2 Carica papaya HOM05D007327 ORTHO05D009342 9.2e-62 240.0 115 100.0
Sabra02G0053500 Salix brachista HOM05D007327 ORTHO05D009342 2.2e-47 192.2 115 74.8
Gorai.002G114900 Gossypium raimondii HOM05D007327 ORTHO05D009342 4.9e-47 191.0 116 75.9
Gohir.A01G103900 Gossypium hirsutum HOM05D007327 ORTHO05D009342 6.4e-47 190.7 116 75.9
Gohir.D01G089200 Gossypium hirsutum HOM05D007327 ORTHO05D009342 1.1e-46 189.9 116 75.0
COL.COLO4_08563 Corchorus olitorius HOM05D007327 ORTHO05D009342 4.2e-46 188.0 116 74.1
Manes.18G092400 Manihot esculenta HOM05D007327 ORTHO05D009342 4.2e-46 188.0 116 76.7
Thecc.08G153100 Theobroma cacao HOM05D007327 ORTHO05D009342 9.3e-46 186.8 116 74.1
Atru.chr13.2102 Acer truncatum HOM05D007327 ORTHO05D009342 2.7e-45 185.3 116 75.0
Duzib093G0512 Durio zibethinus HOM05D007327 ORTHO05D009342 1.0e-44 183.3 105 78.1
QL02p039069 Quercus lobata HOM05D007327 ORTHO05D009342 1.7e-44 182.6 116 71.6
Hma1.2p1_0105F.1_g050650 Hydrangea macrophylla HOM05D007327 ORTHO05D009342 2.3e-44 182.2 116 71.6
Dinv25868 Davidia involucrata HOM05D007327 ORTHO05D009342 3.0e-44 181.8 116 74.1
PGR044G2476 Punica granatum HOM05D007327 ORTHO05D009342 3.0e-44 181.8 106 80.2
PGR080G0004 Punica granatum HOM05D007327 ORTHO05D009342 3.0e-44 181.8 106 80.2
PGR100G0004 Punica granatum HOM05D007327 ORTHO05D009342 3.0e-44 181.8 106 80.2
Potri.002G067900 Populus trichocarpa HOM05D007327 ORTHO05D009342 3.9e-44 181.4 116 71.6
RcHm_v2.0_Chr6g0275381 Rosa chinensis HOM05D007327 ORTHO05D009342 6.6e-44 180.6 116 71.6
GSVIVG01034535001 Vitis vinifera HOM05D007327 ORTHO05D009342 2.5e-43 178.7 116 73.3
TAR628G0726 Trochodendron aralioides HOM05D007327 ORTHO05D009342 5.6e-43 177.6 116 69.8
arahy.Tifrunner.gnm1.ann1.LUB646 Arachis hypogaea HOM05D007327 ORTHO05D009342 7.3e-43 177.2 116 69.0
arahy.Tifrunner.gnm1.ann1.S2I56E Arachis hypogaea HOM05D007327 ORTHO05D009342 7.3e-43 177.2 116 69.0
Ciclev10001558m.g Citrus clementina HOM05D007327 ORTHO05D009342 9.6e-43 176.8 117 74.4
Haze_17755 Corylus avellana HOM05D007327 ORTHO05D009342 1.6e-42 176.0 107 77.6
Nn5g28751 Nelumbo nucifera HOM05D007327 ORTHO05D009342 1.6e-42 176.0 106 76.4
Actinidia17791 Actinidia chinensis HOM05D007327 ORTHO05D009342 2.8e-42 175.3 105 80.0
TWI60G1090 Tripterygium wilfordii HOM05D007327 ORTHO05D009342 3.6e-42 174.9 116 70.7
FvH4_2g13700 Fragaria vesca HOM05D007327 ORTHO05D009342 4.8e-42 174.5 116 69.8
Prupe.8G031100 Prunus persica HOM05D007327 ORTHO05D009342 6.2e-42 174.1 116 70.7
Sed0007638 Sechium edule HOM05D007327 ORTHO05D009342 8.1e-42 173.7 106 73.6
CiPaw.15G016000 Carya illinoinensis HOM05D007327 ORTHO05D009342 1.4e-41 172.9 116 70.7
Eucgr.F04237 Eucalyptus grandis HOM05D007327 ORTHO05D009342 1.4e-41 172.9 105 76.2
FAN24G0347 Fragaria x ananassa HOM05D007327 ORTHO05D009342 1.4e-41 172.9 105 75.2
ClCG08G007070 Citrullus lanatus HOM05D007327 ORTHO05D009342 1.8e-41 172.6 105 73.3
FAN15G0044 Fragaria x ananassa HOM05D007327 ORTHO05D009342 1.8e-41 172.6 104 75.0
Lalb_Chr19g0130241 Lupinus albus HOM05D007327 ORTHO05D009342 1.8e-41 172.6 105 76.2
Aqoxy6G00379 Aquilegia oxysepala HOM05D007327 ORTHO05D009342 2.4e-41 172.2 105 74.3
Cfa018321 Carpinus fangiana HOM05D007327 ORTHO05D009342 2.4e-41 172.2 116 72.4
MELO3C029831.2 Cucumis melo HOM05D007327 ORTHO05D009342 2.4e-41 172.2 105 74.3
MD05G1026600 Malus domestica HOM05D007327 ORTHO05D009342 3.1e-41 171.8 105 75.2
CsaV3_6G005130 Cucumis sativus L. HOM05D007327 ORTHO05D009342 4.0e-41 171.4 105 74.3
Nitab4.5_0002452g0030 Nicotiana tabacum HOM05D007327 ORTHO05D009342 5.3e-41 171.0 116 69.0
HanXRQChr04g0108941 Helianthus annuus HOM05D007327 ORTHO05D009342 6.9e-41 170.6 105 73.3
PSO541G6301 Papaver somniferum HOM05D007327 ORTHO05D009342 6.9e-41 170.6 105 73.3
Peaxi162Scf00599g00511 Petunia axillaris HOM05D007327 ORTHO05D009342 9.0e-41 170.2 116 69.0
Cc00_g31580 Coffea canephora HOM05D007327 ORTHO05D009342 1.2e-40 169.9 116 69.0
Cc10_g14850 Coffea canephora HOM05D007327 ORTHO05D009342 1.2e-40 169.9 116 69.0
Oeu051268.1 Olea europaea HOM05D007327 ORTHO05D009342 1.5e-40 169.5 105 74.3
CSS0015629 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 2.6e-40 168.7 116 70.7
CANSAT25G1895 Cannabis sativa HOM05D007327 ORTHO05D009342 4.5e-40 167.9 105 70.5
ECA247G1449 Erigeron canadensis HOM05D007327 ORTHO05D009342 4.5e-40 167.9 105 70.5
Glyma.02G081500 Glycine max HOM05D007327 ORTHO05D009342 4.5e-40 167.9 104 74.0
Glyma.16G166900 Glycine max HOM05D007327 ORTHO05D009342 5.8e-40 167.5 105 72.4
Phvul.004G094900 Phaseolus vulgaris HOM05D007327 ORTHO05D009342 2.9e-39 165.2 105 69.5
Solyc04g071470.3 Solanum lycopersicum HOM05D007327 ORTHO05D009342 4.9e-39 164.5 116 67.2
Lsat_1_v5_gn_1_6021 Lactuca sativa HOM05D007327 ORTHO05D009342 6.4e-39 164.1 116 66.4
Lj2g0012645 Lotus japonicus HOM05D007327 ORTHO05D009342 6.4e-39 164.1 105 69.5
Sopen04g027430 Solanum pennellii HOM05D007327 ORTHO05D009342 3.2e-38 161.8 116 66.4
Ca_25918_v3 Cicer arietinum L. HOM05D007327 ORTHO05D009342 4.2e-38 161.4 116 61.2
Psat1g101680 Pisum sativum HOM05D007327 ORTHO05D009342 1.6e-37 159.5 111 64.0
Hund26695 Selenicereus undatus HOM05D007327 ORTHO05D009342 1.6e-37 159.5 106 71.7
HPP92_000065 Vanilla planifolia HOM05D007327 ORTHO05D009342 3.5e-37 158.3 110 67.3
Medtr6g036750 Medicago truncatula HOM05D007327 ORTHO05D009342 1.8e-36 156.0 105 66.7
ATR0582G033 Amborella trichopoda HOM05D007327 ORTHO05D009342 3.0e-36 155.2 106 67.0
TPR.G31184 Trifolium pratense HOM05D007327 ORTHO05D009342 5.1e-36 154.5 108 64.8
Zm00001eb146700 Zea mays HOM05D007327 ORTHO05D009342 5.1e-36 154.5 117 65.8
Os01g0867200 Oryza sativa ssp. japonica HOM05D007327 ORTHO05D009342 4.3e-35 151.4 117 65.0
SGA_v2.0_scaffold24G10336 Striga asiatica HOM05D007327 ORTHO05D009342 6.2e-34 147.5 105 67.6
unitig_26.g9897 Utricularia gibba HOM05D007327 ORTHO05D009342 1.6e-29 132.9 106 59.4
PSO675G1203 Papaver somniferum HOM05D007327 ORTHO05D009342 6.0e-29 131.0 81 71.6
SMO335G0004 Selaginella moellendorffii HOM05D007327 ORTHO05D009342 1.1e-25 120.2 112 50.9
SHI09061 Sapria himalayana HOM05D007327 ORTHO05D009342 1.4e-25 119.8 86 61.6
DCAR_010093 Daucus carota HOM05D007327 ORTHO05D009342 4.5e-24 114.8 77 68.8
SalBow7G2928 Salvia bowleyana HOM05D007327 ORTHO05D009342 3.8e-23 111.7 83 61.4
AagrBONN_evm.TU.Sc2ySwM_344.2825 Anthoceros agrestis HOM05D007327 ORTHO05D009342 1.1e-22 110.2 106 53.8
Pp3c20_20940 Physcomitrium patens HOM05D007327 ORTHO05D009342 2.5e-22 109.0 105 50.5
CSS0013095 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 5.5e-22 107.8 66 75.8
CSS0009897 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 7.2e-22 107.5 66 74.2
CSS0040121 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 2.7e-21 105.5 65 75.4
CSS0048751 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 6.1e-21 104.4 66 74.2
Migut.C00996 Erythranthe guttata HOM05D007327 ORTHO05D009342 2.5e-19 99.0 65 67.7
SEGI_20996 Sequoiadendron giganteum HOM05D007327 ORTHO05D009342 2.0e-16 89.4 89 49.4
CSS0014849 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 4.5e-16 88.2 87 55.2
VMungo0464G2010 Vigna mungo HOM05D007327 ORTHO05D009342 2.3e-12 75.9 53 64.2
PRCOL_00001255 Prasinoderma coloniale HOM05D007327 ORTHO05D009342 6.3e-10 67.8 118 32.2
arahy.Tifrunner.gnm1.ann1.KIIE1S Arachis hypogaea HOM05D000198 ORTHO05D003365 1.2e-08 63.5 58 53.4
SMO228G0199 Selaginella moellendorffii HOM05D007327 ORTHO05D009342 2.0e-08 62.8 66 43.9
Cre12.g548350 Chlamydomonas reinhardtii HOM05D007327 ORTHO05D009342 1.3e-07 60.1 128 31.2
MCO03G524 Micromonas commoda HOM05D007327 ORTHO05D009342 5.0e-07 58.2 112 35.7


User provided reference genes

Program Settings