Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 4.8e-154 547.7 266 100.0
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 1.5e-147 526.2 266 97.0
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 1.5e-147 526.2 266 97.0
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 1.5e-147 526.2 266 97.0
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 1.5e-147 526.2 266 97.0
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 1.5e-147 526.2 266 97.0
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 1.5e-147 526.2 266 97.0
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 1.5e-147 526.2 266 97.0
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 1.5e-147 526.2 266 97.0
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 4.3e-147 524.6 266 96.6
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.2e-146 522.3 266 96.2
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.2e-146 522.3 266 96.2
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 1.1e-145 520.0 266 95.5
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 1.8e-145 519.2 266 95.5
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 2.0e-144 515.8 263 96.2
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.0e-143 513.5 266 95.5
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.0e-143 513.5 266 95.5
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 1.3e-143 513.1 266 94.7
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 1.3e-143 513.1 266 94.7
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.7e-143 512.7 266 95.5
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 2.9e-143 511.9 266 95.9
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 8.5e-143 510.4 266 95.1
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 2.5e-142 508.8 263 95.1
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 1.2e-141 506.5 266 94.7
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.4e-140 503.1 266 94.4
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 1.4e-140 503.1 266 94.4
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 3.0e-140 501.9 264 94.3
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 3.9e-140 501.5 266 94.4
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 8.8e-140 500.4 266 94.0
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 1.5e-139 499.6 264 93.9
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 4.4e-139 498.0 266 94.0
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 3.7e-138 495.0 266 93.2
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 3.1e-137 491.9 266 93.2
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 2.5e-134 482.3 250 95.6
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 3.2e-134 481.9 250 95.2
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 4.2e-134 481.5 253 94.5
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 9.4e-134 480.3 266 91.4
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 1.2e-133 479.9 251 94.8
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 6.1e-133 477.6 251 94.4
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 5.2e-132 474.6 265 89.4
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 2.0e-131 472.6 266 89.1
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 2.8e-130 468.8 250 94.0
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 8.2e-130 467.2 238 95.8
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.1e-129 466.8 243 95.1
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.1e-129 466.8 243 95.1
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 2.4e-129 465.7 238 95.4
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 1.6e-128 463.0 265 89.4
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 1.0e-127 460.3 263 85.2
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 4.2e-126 454.9 239 94.6
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 8.8e-124 447.2 262 85.1
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 6.3e-122 441.0 264 86.0
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.8e-116 422.9 209 97.6
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 2.3e-116 422.5 261 82.4
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 1.1e-113 413.7 250 85.6
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 1.9e-110 402.9 211 94.8
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 1.9e-110 402.9 211 94.8
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 2.3e-108 396.0 209 93.3
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 4.0e-108 395.2 213 93.4
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 6.3e-106 387.9 202 95.5
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 2.4e-105 386.0 251 80.1
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.3e-103 380.2 209 91.9
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.7e-101 371.7 257 77.0
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 5.2e-100 368.2 209 86.6
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 2.3e-95 352.8 187 94.7
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.6e-85 320.1 184 87.5
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 2.1e-77 293.1 156 92.9
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 2.8e-77 292.7 161 91.3
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.4e-76 290.4 159 91.2
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 2.6e-75 286.2 249 64.7
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 9.9e-75 284.3 148 94.6
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.0e-71 274.2 145 92.4
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 3.0e-71 272.7 150 92.0
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.1e-70 270.8 145 93.1
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 3.3e-70 269.2 148 90.5
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 4.3e-70 268.9 213 66.7
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 9.9e-67 257.7 130 96.2
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.2e-66 256.5 196 71.9
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 4.9e-66 255.4 279 48.7
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 3.2e-57 226.1 119 93.3
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 5.4e-57 225.3 122 91.8
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 1.6e-56 223.8 120 94.2
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-54 217.2 160 72.5
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.6e-51 206.5 116 87.1
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 3.4e-51 206.1 108 95.4
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 3.2e-49 199.5 101 97.0
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 7.1e-49 198.4 117 88.0
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 2.3e-47 193.4 103 93.2
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 1.8e-44 183.7 105 88.6
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 2.0e-43 180.3 85 98.8
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 3.4e-43 179.5 153 63.4
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-42 177.6 210 49.0
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 4.9e-42 175.6 101 85.1
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 1.6e-37 160.6 258 35.3
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.1e-36 157.9 184 51.6
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 1.5e-35 154.1 81 91.4
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.3e-33 144.8 107 71.0
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 3.6e-32 142.9 84 86.9
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-31 141.0 149 55.7
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 3.0e-31 139.8 82 86.6
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 6.7e-31 138.7 101 72.3
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 3.1e-28 129.8 80 80.0
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 5.3e-28 129.0 75 84.0
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 8.5e-26 121.7 154 48.7
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 1.2e-24 117.9 62 88.7
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.6e-24 117.5 79 75.9
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 3.9e-23 112.8 58 94.8
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 3.9e-23 112.8 68 79.4
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 4.8e-21 105.9 56 89.3
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 1.2e-19 101.3 172 41.9
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.7e-19 98.6 63 76.2
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 6.5e-18 95.5 48 89.6
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 5.5e-17 92.4 65 73.8
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.4e-17 91.7 67 71.6
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 1.2e-16 91.3 119 45.4
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 6.1e-16 89.0 61 67.2
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 9.7e-14 81.6 53 84.9
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-13 81.3 39 89.7
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.7e-13 79.7 53 81.1
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 1.8e-12 77.4 59 71.2
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.8e-12 77.4 65 58.5
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.1e-12 76.6 56 75.0
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 4.1e-12 76.3 41 82.9
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 1.0e-10 71.6 84 47.6
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 6.5e-10 68.9 35 88.6
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.5e-09 67.8 49 73.5
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 4.2e-09 66.2 31 93.5
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 2.1e-08 63.9 70 44.3
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 3.6e-08 63.2 29 96.6
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.0e-07 61.6 30 86.7
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 4.0e-07 59.7 32 84.4
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 4.0e-07 59.7 30 83.3
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 8.8e-07 58.5 31 83.9
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-06 57.8 68 48.5


User provided reference genes

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