Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 0.0e+00 1343.2 702 100.0
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 1.4e-237 826.6 695 65.3
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.7e-230 803.1 687 65.4
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 3.1e-229 798.9 700 64.0
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 3.4e-223 778.9 703 61.7
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 4.9e-222 775.0 694 62.2
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 7.8e-220 767.7 696 62.8
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.3e-219 766.9 659 64.3
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 9.5e-218 760.8 688 62.5
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 1.4e-216 756.9 688 61.8
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 2.3e-216 756.1 688 61.0
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.0e-216 755.4 688 60.2
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.5e-215 753.4 688 60.2
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 3.4e-215 752.3 701 61.6
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 9.8e-215 750.7 723 60.0
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.2e-214 749.6 688 60.0
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.7e-212 742.7 666 63.8
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.6e-212 741.9 688 59.4
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.0e-211 740.7 697 60.1
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 8.6e-211 737.6 725 59.4
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 3.3e-210 735.7 725 59.3
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 7.3e-210 734.6 700 59.3
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 2.8e-209 732.6 694 59.5
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.2e-208 728.4 661 60.5
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 4.6e-204 715.3 712 57.9
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 4.6e-204 715.3 691 61.1
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 4.7e-201 705.3 692 59.0
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 3.8e-198 695.7 693 56.6
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 9.2e-197 691.0 696 56.6
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.2e-196 690.6 693 56.4
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 3.9e-195 685.6 707 56.6
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 1.1e-194 684.1 691 57.6
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 4.7e-193 678.7 691 56.9
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 2.4e-192 676.4 694 56.8
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 2.2e-190 669.8 705 57.0
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 2.2e-190 669.8 676 57.1
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 4.9e-190 668.7 717 57.3
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 2.4e-189 666.4 560 65.7
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 4.2e-189 665.6 717 57.2
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 4.6e-188 662.1 735 53.5
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 7.8e-188 661.4 697 54.9
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 1.5e-186 657.1 739 52.9
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 1.9e-186 656.8 731 54.6
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 4.3e-186 655.6 739 53.0
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 7.3e-186 654.8 735 54.8
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 2.8e-185 652.9 731 53.2
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 4.8e-185 652.1 697 55.1
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 9.0e-184 647.9 671 56.0
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 9.0e-184 647.9 732 54.2
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 4.5e-183 645.6 690 55.2
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 1.3e-182 644.0 696 54.5
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 6.4e-182 641.7 699 56.1
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.1e-181 641.0 695 53.7
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.1e-181 641.0 738 52.3
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 1.4e-181 640.6 730 52.6
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.4e-181 640.6 747 52.6
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 2.7e-180 636.3 710 54.4
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 3.5e-180 636.0 747 52.3
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 1.8e-179 633.6 734 52.3
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 3.9e-179 632.5 656 56.6
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.5e-178 629.8 728 52.7
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 3.3e-178 629.4 690 54.5
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 6.9e-176 621.7 725 52.4
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 6.9e-176 621.7 695 53.8
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.5e-175 620.5 723 51.2
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 5.8e-175 618.6 724 52.5
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 9.9e-175 617.8 692 53.9
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 6.4e-174 615.1 706 52.8
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 3.2e-173 612.8 552 60.3
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 1.6e-172 610.5 696 52.0
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 6.0e-172 608.6 696 52.2
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 6.0e-172 608.6 691 53.7
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 2.3e-171 606.7 705 51.6
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 1.9e-170 603.6 711 52.2
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 2.5e-170 603.2 657 55.6
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.1e-168 596.3 752 50.4
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 5.3e-168 595.5 527 61.3
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 6.9e-168 595.1 692 51.2
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 1.2e-167 594.3 687 52.1
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 1.3e-166 590.9 659 53.7
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 4.9e-166 589.0 694 52.0
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 1.9e-165 587.0 691 50.4
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 3.2e-165 586.3 695 52.2
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 2.1e-164 583.6 692 52.6
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 4.6e-164 582.4 696 52.3
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 1.3e-163 580.9 692 51.4
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.8e-163 580.5 693 50.4
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.1e-162 577.8 693 52.4
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 1.5e-162 577.4 692 51.4
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.9e-162 577.0 692 51.0
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 1.9e-162 577.0 733 49.9
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 5.7e-162 575.5 712 51.5
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 9.7e-162 574.7 693 51.1
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 2.8e-161 573.2 692 49.3
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 4.8e-161 572.4 568 55.5
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 3.1e-160 569.7 711 49.1
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 4.1e-160 569.3 693 51.5
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 4.1e-160 569.3 695 48.9
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 3.4e-159 566.2 721 49.2
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 6.5e-158 562.0 529 57.5
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 8.5e-158 561.6 740 48.6
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 3.9e-155 552.7 740 48.0
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 1.9e-154 550.4 694 49.6
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 7.4e-154 548.5 592 53.0
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 1.4e-152 544.3 692 49.9
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 4.1e-152 542.7 695 49.6
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 3.8e-150 536.2 662 51.2
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 5.7e-146 522.3 699 47.9
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 2.9e-142 510.0 489 56.4
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 8.2e-137 491.9 650 48.5
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 3.5e-135 486.5 752 44.4
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 2.9e-134 483.4 754 44.3
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 4.2e-133 479.6 662 48.0
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 2.7e-132 476.9 750 42.1
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.7e-129 467.6 353 66.0
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.0e-122 444.1 677 43.0
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 6.5e-118 429.1 351 64.7
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 2.1e-108 397.5 691 41.7
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 1.0e-107 395.2 372 58.6
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.0e-94 352.1 625 39.7
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.5e-93 348.2 698 37.2
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 7.1e-88 329.3 582 40.2
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.4e-80 304.3 515 43.7
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 4.6e-79 300.1 663 36.2
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 1.4e-72 278.5 382 45.3
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.2e-71 275.4 388 43.8
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 8.7e-70 269.2 389 42.7
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.5e-69 268.5 388 43.0
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 2.0e-66 258.1 657 35.9
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 7.1e-64 249.6 217 60.4
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.3e-61 240.4 376 41.0
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.6e-60 238.4 389 38.6
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 3.7e-60 237.3 307 47.9
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.7e-60 237.3 347 40.3
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.4e-59 235.3 392 38.0
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.4e-59 235.3 392 38.0
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 1.4e-56 225.3 338 44.4
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 9.7e-45 186.0 204 52.9
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 7.4e-37 159.8 425 36.0
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 1.8e-35 155.2 94 73.4
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.3e-28 132.5 420 34.3
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 2.2e-20 105.1 72 65.3
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 2.9e-09 68.2 50 64.0
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 1.2e-07 62.8 75 54.7
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 2.7e-07 61.6 45 66.7
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 8.0e-07 60.1 63 52.4
Actinidia08821 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.3e-06 58.5 375 25.6


User provided reference genes

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