Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c31932.2 Carica papaya HOM05D002582 ORTHO05D002781 4.4e-95 351.3 176 100.0
Atru.chr8.1437 Acer truncatum HOM05D002582 ORTHO05D002781 3.0e-51 205.7 178 60.7
CANSAT64G0891 Cannabis sativa HOM05D002582 ORTHO05D002781 1.2e-44 183.7 176 59.1
Manes.08G028900 Manihot esculenta HOM05D002582 ORTHO05D002781 1.2e-44 183.7 177 58.2
QL07p038072 Quercus lobata HOM05D002582 ORTHO05D002781 1.7e-43 179.9 178 56.7
Haze_19657 Corylus avellana HOM05D002582 ORTHO05D002781 2.3e-43 179.5 153 60.8
Dinv21159 Davidia involucrata HOM05D002582 ORTHO05D002781 1.1e-42 177.2 179 57.5
TWI74G1463 Tripterygium wilfordii HOM05D002582 ORTHO05D002781 1.1e-42 177.2 179 58.1
Potri.006G208300 Populus trichocarpa HOM05D002582 ORTHO05D002781 1.5e-42 176.8 194 53.1
Cfa016652 Carpinus fangiana HOM05D002582 ORTHO05D002781 5.6e-42 174.9 178 54.5
Duzib093G1566 Durio zibethinus HOM05D002582 ORTHO05D002781 7.3e-42 174.5 179 55.3
Gohir.A04G059778 Gossypium hirsutum HOM05D002582 ORTHO05D002781 9.5e-42 174.1 178 55.6
Potri.016G074900 Populus trichocarpa HOM05D002582 ORTHO05D002781 9.5e-42 174.1 178 55.1
Thecc.05G096300 Theobroma cacao HOM05D002582 ORTHO05D002781 1.2e-41 173.7 179 55.3
Sabra06G0160200 Salix brachista HOM05D002582 ORTHO05D002781 2.1e-41 172.9 194 52.1
Gohir.A04G059752 Gossypium hirsutum HOM05D002582 ORTHO05D002781 2.8e-41 172.6 179 54.7
Dinv31725 Davidia involucrata HOM05D002582 ORTHO05D002781 3.6e-41 172.2 175 55.4
Gohir.D04G096400 Gossypium hirsutum HOM05D002582 ORTHO05D002781 3.6e-41 172.2 178 55.1
Gorai.009G399100 Gossypium raimondii HOM05D002582 ORTHO05D002781 3.6e-41 172.2 179 54.7
TWI77G0235 Tripterygium wilfordii HOM05D002582 ORTHO05D002781 8.1e-41 171.0 179 55.9
GSVIVG01033899001 Vitis vinifera HOM05D002582 ORTHO05D002781 2.3e-40 169.5 178 55.1
Prupe.7G100800 Prunus persica HOM05D002582 ORTHO05D002781 5.2e-40 168.3 154 59.7
Sabra16G0077500 Salix brachista HOM05D002582 ORTHO05D002781 5.2e-40 168.3 177 53.7
COL.COLO4_29665 Corchorus olitorius HOM05D002582 ORTHO05D002781 1.2e-39 167.2 144 63.9
TAR369G0677 Trochodendron aralioides HOM05D002582 ORTHO05D002781 5.8e-39 164.9 178 51.1
Sabra16G0080300 Salix brachista HOM05D002582 ORTHO05D002781 9.9e-39 164.1 178 52.8
Ciclev10011033m.g Citrus clementina HOM05D002582 ORTHO05D002781 2.9e-38 162.5 152 60.5
CsaV3_6G040880 Cucumis sativus L. HOM05D002582 ORTHO05D002781 2.9e-38 162.5 150 57.3
Hma1.2p1_2017F.1_g311170 Hydrangea macrophylla HOM05D002582 ORTHO05D002781 2.9e-38 162.5 178 53.4
Lsat_1_v5_gn_6_35600 Lactuca sativa HOM05D002582 ORTHO05D002781 6.4e-38 161.4 158 55.7
ClCG04G010240 Citrullus lanatus HOM05D002582 ORTHO05D002781 8.3e-38 161.0 150 58.0
MD14G1032100 Malus domestica HOM05D002582 ORTHO05D002781 4.1e-37 158.7 179 54.2
PGR004G1279 Punica granatum HOM05D002582 ORTHO05D002781 4.1e-37 158.7 154 58.4
Sc02g0000460 Simmondsia chinensis HOM05D002582 ORTHO05D002781 1.6e-36 156.8 181 49.2
MELO3C024566.2 Cucumis melo HOM05D002582 ORTHO05D002781 2.1e-36 156.4 150 58.0
Eucgr.A02629 Eucalyptus grandis HOM05D002582 ORTHO05D002781 2.7e-36 156.0 177 50.3
Lalb_Chr06g0172521 Lupinus albus HOM05D002582 ORTHO05D002781 2.7e-36 156.0 147 58.5
Nn6g34803 Nelumbo nucifera HOM05D002582 ORTHO05D002781 3.5e-36 155.6 177 50.3
Lj2A144G24 Lonicera japonica HOM05D002582 ORTHO05D002781 7.8e-36 154.5 150 56.7
Sed0005359 Sechium edule HOM05D002582 ORTHO05D002781 1.0e-35 154.1 149 55.0
CSS0000696 Camellia sinensis var. sinensis HOM05D002582 ORTHO05D002781 1.7e-35 153.3 153 57.5
vmacro14777 Vaccinium macrocarpon HOM05D002582 ORTHO05D002781 3.0e-35 152.5 156 53.8
PSO339G0972 Papaver somniferum HOM05D002582 ORTHO05D002781 3.9e-35 152.1 161 52.2
THA.LOC104816603 Tarenaya hassleriana HOM05D002582 ORTHO05D002781 8.6e-35 151.0 149 55.7
Migut.J00661 Erythranthe guttata HOM05D002582 ORTHO05D002781 1.1e-34 150.6 153 54.9
MD12G1031800 Malus domestica HOM05D002582 ORTHO05D002781 1.9e-34 149.8 180 51.7
Sp6g36660 Schrenkiella parvula HOM05D002582 ORTHO05D002781 1.9e-34 149.8 155 52.3
RcHm_v2.0_Chr3g0474881 Rosa chinensis HOM05D002582 ORTHO05D002781 3.3e-34 149.1 152 57.2
Actinidia05397 Actinidia chinensis HOM05D002582 ORTHO05D002781 4.3e-34 148.7 156 52.6
FvH4_6g19540 Fragaria vesca HOM05D002582 ORTHO05D002781 4.3e-34 148.7 135 63.7
FAN14G0204 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.3e-34 148.7 135 63.7
Rhsim01G0258700 Rhododendron simsii HOM05D002582 ORTHO05D002781 4.3e-34 148.7 152 54.6
Sed0021820 Sechium edule HOM05D002582 ORTHO05D002781 4.3e-34 148.7 150 54.7
TAR623G1676 Trochodendron aralioides HOM05D002582 ORTHO05D002781 5.6e-34 148.3 91 78.0
PSO801G0394 Papaver somniferum HOM05D002582 ORTHO05D002781 9.5e-34 147.5 161 51.6
FAN05G0212 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.1e-33 146.4 173 54.9
FAN05G2352 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.1e-33 146.4 173 54.9
Thhalv10012627m.g Eutrema salsugineum HOM05D002582 ORTHO05D002781 2.8e-33 146.0 150 54.0
arahy.Tifrunner.gnm1.ann1.L9F1QW Arachis hypogaea HOM05D002582 ORTHO05D002781 4.7e-33 145.2 131 58.8
arahy.Tifrunner.gnm1.ann1.YV8VHR Arachis hypogaea HOM05D002582 ORTHO05D002781 4.7e-33 145.2 131 58.8
Nitab4.5_0000573g0120 Nicotiana tabacum HOM05D002582 ORTHO05D002781 4.7e-33 145.2 174 46.6
FAN09G2395 Fragaria x ananassa HOM05D002582 ORTHO05D002781 6.2e-33 144.8 173 53.2
Glyma.10G075900 Glycine max HOM05D002582 ORTHO05D002781 6.2e-33 144.8 157 53.5
Aa31LG11G7180 Aethionema arabicum HOM05D002582 ORTHO05D002781 8.1e-33 144.4 150 54.7
Aqoxy2G01049 Aquilegia oxysepala HOM05D002582 ORTHO05D002781 1.4e-32 143.7 176 48.9
HanXRQChr09g0238341 Helianthus annuus HOM05D002582 ORTHO05D002781 1.4e-32 143.7 133 57.9
FAN02G2142 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.8e-32 143.3 173 53.8
Glyma.02G200700 Glycine max HOM05D002582 ORTHO05D002781 1.8e-32 143.3 157 52.9
Lalb_Chr02g0154741 Lupinus albus HOM05D002582 ORTHO05D002781 3.1e-32 142.5 147 53.7
AUR62006244 Chenopodium quinoa HOM05D002582 ORTHO05D002781 4.0e-32 142.1 145 53.1
AUR62028482 Chenopodium quinoa HOM05D002582 ORTHO05D002781 5.2e-32 141.7 146 52.7
Phvul.007G230450 Phaseolus vulgaris HOM05D002582 ORTHO05D002781 5.2e-32 141.7 136 57.4
Ah.08g210330 Amaranthus hybridus HOM05D002582 ORTHO05D002781 8.9e-32 141.0 145 51.0
MSTRG.5869 Avicennia marina HOM05D002582 ORTHO05D002781 2.6e-31 139.4 131 54.2
VMungo0720G2392 Vigna mungo HOM05D002582 ORTHO05D002781 4.4e-31 138.7 154 51.9
AL6G16220 Arabidopsis lyrata HOM05D002582 ORTHO05D002781 5.8e-31 138.3 150 52.0
ECA233G2523 Erigeron canadensis HOM05D002582 ORTHO05D002781 5.8e-31 138.3 98 67.3
EL10Ac7g16845 Beta vulgaris HOM05D002582 ORTHO05D002781 7.6e-31 137.9 145 51.0
Lj5g0016358 Lotus japonicus HOM05D002582 ORTHO05D002781 9.9e-31 137.5 136 55.9
Solyc09g010280.3 Solanum lycopersicum HOM05D002582 ORTHO05D002781 9.9e-31 137.5 150 48.7
A03p02620 Brassica napus HOM05D002582 ORTHO05D002781 1.3e-30 137.1 151 50.3
BraA03t09623Z Brassica rapa HOM05D002582 ORTHO05D002781 1.3e-30 137.1 151 50.3
CARHR206920 Cardamine hirsuta HOM05D002582 ORTHO05D002781 1.3e-30 137.1 150 50.7
Sopen09g004980 Solanum pennellii HOM05D002582 ORTHO05D002781 1.7e-30 136.7 150 48.7
Cc06_g06230 Coffea canephora HOM05D002582 ORTHO05D002781 2.2e-30 136.3 131 55.7
Peaxi162Scf00013g01411 Petunia axillaris HOM05D002582 ORTHO05D002781 3.8e-30 135.6 152 48.7
SGA_v2.0_scaffold13G06691 Striga asiatica HOM05D002582 ORTHO05D002781 3.8e-30 135.6 100 67.0
CAN.G397.91 Capsicum annuum HOM05D002582 ORTHO05D002781 6.4e-30 134.8 151 48.3
Psat6g080120 Pisum sativum HOM05D002582 ORTHO05D002781 1.1e-29 134.0 155 49.0
MSTRG.19280 Avicennia marina HOM05D002582 ORTHO05D002781 1.4e-29 133.7 130 56.2
BcaB01g05735 Brassica carinata HOM05D002582 ORTHO05D002781 1.4e-29 133.7 150 50.0
BolC3t12851H Brassica oleracea HOM05D002582 ORTHO05D002781 4.1e-29 132.1 149 49.7
Carub.0006s0509 Capsella rubella HOM05D002582 ORTHO05D002781 4.1e-29 132.1 150 51.3
C03p03010 Brassica napus HOM05D002582 ORTHO05D002781 5.4e-29 131.7 149 49.7
BcaB01g05984 Brassica carinata HOM05D002582 ORTHO05D002781 9.2e-29 131.0 149 49.0
DCAR_007764 Daucus carota HOM05D002582 ORTHO05D002781 1.6e-28 130.2 99 61.6
DCAR_013417 Daucus carota HOM05D002582 ORTHO05D002781 2.1e-28 129.8 94 66.0
TPR.G40320 Trifolium pratense HOM05D002582 ORTHO05D002781 2.7e-28 129.4 158 48.7
Sp3g09800 Schrenkiella parvula HOM05D002582 ORTHO05D002781 3.5e-28 129.0 149 47.7
Oeu017695.2 Olea europaea HOM05D002582 ORTHO05D002781 6.0e-28 128.3 92 67.4
Aa31LG3G4950 Aethionema arabicum HOM05D002582 ORTHO05D002781 1.3e-27 127.1 149 47.7
CiPaw.10G012900 Carya illinoinensis HOM05D002582 ORTHO05D002781 1.7e-27 126.7 91 68.1
Medtr1g058390 Medicago truncatula HOM05D002582 ORTHO05D002781 2.3e-27 126.3 156 48.7
Thhalv10020029m.g Eutrema salsugineum HOM05D002582 ORTHO05D002781 3.0e-27 125.9 149 49.0
AT5G06220 Arabidopsis thaliana HOM05D002582 ORTHO05D002781 5.1e-27 125.2 149 50.3
Ca_25956_v3 Cicer arietinum L. HOM05D002582 ORTHO05D002781 5.1e-27 125.2 91 63.7
ECA236G1473 Erigeron canadensis HOM05D002582 ORTHO05D002781 2.8e-25 119.4 82 65.9
unitig_8.g4208 Utricularia gibba HOM05D002582 ORTHO05D002781 4.7e-25 118.6 132 48.5
AT3G11560 Arabidopsis thaliana HOM05D002582 ORTHO05D002781 6.2e-25 118.2 149 43.6
BcaB06g25608 Brassica carinata HOM05D002582 ORTHO05D002781 5.2e-24 115.2 154 44.8
BcaC06g32329 Brassica carinata HOM05D002582 ORTHO05D002781 5.2e-24 115.2 110 56.4
C09p70660 Brassica napus HOM05D002582 ORTHO05D002781 5.2e-24 115.2 110 56.4
ATR0081G061 Amborella trichopoda HOM05D002582 ORTHO05D002781 1.2e-23 114.0 143 44.1
Psat3g031120 Pisum sativum HOM05D002582 ORTHO05D002781 1.2e-23 114.0 178 44.4
SEGI_16826 Sequoiadendron giganteum HOM05D002582 ORTHO05D002781 2.6e-23 112.8 87 57.5
ECA248G1278 Erigeron canadensis HOM05D002582 ORTHO05D002781 4.4e-23 112.1 130 48.5
CDE04G1506 Ceratophyllum demersum HOM05D002582 ORTHO05D002781 7.6e-23 111.3 104 51.0
BolC9t59822H Brassica oleracea HOM05D002582 ORTHO05D002781 1.3e-22 110.5 110 55.5
CARHR086110 Cardamine hirsuta HOM05D002582 ORTHO05D002781 3.8e-22 109.0 154 41.6
BcaC05g29355 Brassica carinata HOM05D002582 ORTHO05D002781 6.4e-22 108.2 150 46.0
A05p37770 Brassica napus HOM05D002582 ORTHO05D002781 6.4e-22 108.2 149 45.6
C05p56390 Brassica napus HOM05D002582 ORTHO05D002781 6.4e-22 108.2 150 46.0
BolC5t34306H Brassica oleracea HOM05D002582 ORTHO05D002781 6.4e-22 108.2 150 46.0
BraA05t22572Z Brassica rapa HOM05D002582 ORTHO05D002781 6.4e-22 108.2 149 45.6
CDE12G0162 Ceratophyllum demersum HOM05D002582 ORTHO05D002781 1.4e-21 107.1 112 48.2
Ca_09028_v3 Cicer arietinum L. HOM05D002582 ORTHO05D002781 1.4e-21 107.1 176 39.2
Zm00001eb033410 Zea mays HOM05D002582 ORTHO05D002781 1.4e-21 107.1 106 48.1
Carub.0003s1088 Capsella rubella HOM05D002582 ORTHO05D002781 2.4e-21 106.3 149 38.9
BcaC06g32587 Brassica carinata HOM05D002582 ORTHO05D002781 4.2e-21 105.5 108 54.6
A10p30250 Brassica napus HOM05D002582 ORTHO05D002781 4.2e-21 105.5 111 54.1
BraA10t45063Z Brassica rapa HOM05D002582 ORTHO05D002781 4.2e-21 105.5 111 54.1
Medtr7g105340 Medicago truncatula HOM05D002582 ORTHO05D002781 1.6e-20 103.6 179 38.5
HPP92_013111 Vanilla planifolia HOM05D002582 ORTHO05D002781 2.1e-20 103.2 149 40.3
Os08g0482100 Oryza sativa ssp. japonica HOM05D002582 ORTHO05D002781 6.0e-20 101.7 102 51.0
HPP92_013132 Vanilla planifolia HOM05D002582 ORTHO05D002781 1.0e-19 100.9 149 39.6
Hund03895 Selenicereus undatus HOM05D002582 ORTHO05D002781 5.6e-18 95.1 69 65.2
TPR.G40540 Trifolium pratense HOM05D002582 ORTHO05D002781 1.5e-15 87.0 128 44.5
TPR.G23364 Trifolium pratense HOM05D002582 ORTHO05D002781 1.7e-14 83.6 157 38.9
Pp3c14_11120 Physcomitrium patens HOM05D002582 ORTHO05D002781 1.4e-08 63.9 138 32.6
Pp3c22_13150 Physcomitrium patens HOM05D002582 ORTHO05D002781 2.2e-06 56.6 69 40.6


User provided reference genes

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