Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 2.7e-106 388.7 191 100.0
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 1.4e-59 233.4 267 53.6
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 2.1e-42 176.4 164 59.1
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 1.3e-41 173.7 215 51.2
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 7.2e-35 151.4 174 51.1
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 6.1e-26 121.7 143 49.0
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 1.4e-25 120.6 119 54.6
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 2.3e-25 119.8 140 50.7
Cpa.g.sc40.12 Carica papaya HOM05D004670 ORTHO05D022223 6.7e-25 118.2 207 42.0
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 1.1e-24 117.5 104 57.7
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 1.5e-24 117.1 107 49.5
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 2.0e-24 116.7 138 48.6
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 5.7e-24 115.2 112 54.5
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 9.7e-24 114.4 111 50.5
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 2.2e-23 113.2 115 53.9
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 2.8e-23 112.8 111 52.3
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 2.8e-23 112.8 104 53.8
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 1.1e-22 110.9 109 52.3
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 1.4e-22 110.5 118 49.2
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 4.1e-22 109.0 112 48.2
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 7.0e-22 108.2 104 50.0
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 7.0e-22 108.2 104 50.0
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 7.0e-22 108.2 104 50.0
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 7.0e-22 108.2 123 47.2
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 2.0e-21 106.7 107 48.6
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 2.0e-21 106.7 135 44.4
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 1.0e-20 104.4 114 46.5
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 1.0e-20 104.4 118 44.1
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.7e-20 103.6 110 49.1
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.7e-20 103.6 110 49.1
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 6.5e-20 101.7 105 49.5
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 8.5e-20 101.3 99 48.5
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 1.5e-19 100.5 117 41.9
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 4.2e-19 99.0 136 37.5
Cpa.g.sc93.21 Carica papaya HOM05D004670 ORTHO05D022223 7.2e-19 98.2 104 55.8
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 7.2e-19 98.2 108 49.1
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 9.4e-19 97.8 110 44.5
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 9.4e-19 97.8 110 44.5
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 1.2e-18 97.4 112 47.3
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 1.6e-18 97.1 114 41.2
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 1.6e-18 97.1 115 45.2
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 2.7e-18 96.3 115 45.2
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 4.7e-18 95.5 119 44.5
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 4.7e-18 95.5 117 47.9
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 6.1e-18 95.1 148 39.2
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 8.0e-18 94.7 102 48.0
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 8.0e-18 94.7 126 43.7
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 1.0e-17 94.4 142 38.7
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 1.8e-17 93.6 109 47.7
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 2.3e-17 93.2 108 41.7
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 4.0e-17 92.4 100 49.0
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 5.2e-17 92.0 110 45.5
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 6.7e-17 91.7 109 45.0
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 6.7e-17 91.7 110 44.5
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 1.2e-16 90.9 115 44.3
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 1.2e-16 90.9 137 41.6
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 1.5e-16 90.5 112 46.4
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 2.0e-16 90.1 111 41.4
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 2.0e-16 90.1 111 45.9
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 2.6e-16 89.7 105 41.0
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 4.4e-16 89.0 124 38.7
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 4.4e-16 89.0 110 45.5
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 5.7e-16 88.6 99 45.5
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 5.7e-16 88.6 96 49.0
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.3e-15 87.4 111 42.3
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 1.3e-15 87.4 100 43.0
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 2.2e-15 86.7 121 37.2
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 2.2e-15 86.7 132 37.1
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 2.8e-15 86.3 119 41.2
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 4.8e-15 85.5 104 42.3
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 1.1e-14 84.3 108 44.4
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 1.4e-14 84.0 119 42.0
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 1.4e-14 84.0 110 44.5
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 1.4e-14 84.0 124 38.7
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 1.4e-14 84.0 110 44.5
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 1.8e-14 83.6 111 41.4
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 1.8e-14 83.6 103 44.7
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 1.8e-14 83.6 103 44.7
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 3.1e-14 82.8 137 37.2
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 5.3e-14 82.0 109 40.4
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 7.0e-14 81.6 115 40.9
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 9.1e-14 81.3 110 41.8
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.2e-13 80.9 87 47.1
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 1.6e-13 80.5 124 38.7
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 2.7e-13 79.7 112 41.1
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 2.7e-13 79.7 93 39.8
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 3.5e-13 79.3 126 37.3
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 4.5e-13 79.0 94 46.8
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 5.9e-13 78.6 110 40.9
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 5.9e-13 78.6 110 40.9
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 7.7e-13 78.2 108 37.0
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 1.7e-12 77.0 114 38.6
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 2.2e-12 76.6 115 41.7
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 1.5e-11 73.9 123 35.0
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 1.5e-11 73.9 108 37.0
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 2.5e-11 73.2 141 31.2
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 3.2e-11 72.8 114 30.7
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 7.2e-11 71.6 123 33.3
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 1.6e-10 70.5 71 47.9
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 1.6e-10 70.5 107 39.3
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 2.7e-10 69.7 104 34.6
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 4.7e-10 68.9 71 47.9
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 4.7e-10 68.9 71 47.9
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 1.0e-09 67.8 105 35.2
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 1.8e-09 67.0 139 30.2
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 3.4e-08 62.8 140 32.1
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 5.7e-08 62.0 102 37.3
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 5.7e-08 62.0 114 34.2
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 5.7e-08 62.0 125 35.2
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 7.5e-08 61.6 114 34.2


User provided reference genes

Program Settings