Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c30822.1 Carica papaya HOM05D002342 ORTHO05D002407 3.4e-203 711.4 358 100.0
Cpa.g.sc83.15 Carica papaya HOM05D002342 ORTHO05D002407 2.3e-135 486.1 316 81.3
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 3.7e-85 319.3 368 48.4
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 3.7e-85 319.3 368 48.4
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 4.9e-85 318.9 362 48.3
CiPaw.01G119000 Carya illinoinensis HOM05D002342 ORTHO05D002407 7.0e-84 315.1 367 46.9
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 2.3e-82 310.1 383 45.7
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 5.0e-82 308.9 366 47.0
Dinv27217 Davidia involucrata HOM05D002342 ORTHO05D002407 8.6e-82 308.1 366 48.4
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 1.1e-81 307.8 368 46.2
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 1.2e-80 304.3 365 46.8
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 1.2e-80 304.3 365 46.3
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 2.8e-80 303.1 367 46.6
QL05p014631 Quercus lobata HOM05D002342 ORTHO05D002407 8.0e-80 301.6 358 46.6
Haze_11627 Corylus avellana HOM05D002342 ORTHO05D002407 1.4e-79 300.8 352 48.0
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 2.3e-79 300.1 359 47.1
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 6.8e-79 298.5 364 45.9
CiPaw.01G119300 Carya illinoinensis HOM05D002342 ORTHO05D002407 8.9e-79 298.1 368 45.9
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 1.5e-78 297.4 364 45.6
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 2.9e-77 293.1 366 47.5
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 1.9e-76 290.4 398 44.7
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 9.2e-76 288.1 369 45.3
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 2.7e-75 286.6 394 44.2
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 2.7e-75 286.6 394 44.2
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 7.8e-75 285.0 365 44.7
Sed0007147 Sechium edule HOM05D002342 ORTHO05D002407 7.8e-75 285.0 364 45.3
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 1.0e-74 284.6 366 44.8
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.7e-74 283.9 369 44.7
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 5.0e-74 282.3 379 44.1
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 8.6e-74 281.6 362 44.8
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 1.1e-73 281.2 369 43.6
Prupe.1G159000 Prunus persica HOM05D002342 ORTHO05D002407 1.9e-73 280.4 365 43.8
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 1.9e-73 280.4 365 43.8
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 2.5e-73 280.0 368 45.1
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 3.3e-73 279.6 360 45.6
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 9.5e-73 278.1 363 44.4
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 2.8e-72 276.6 369 44.7
Atru.chr4.1627 Acer truncatum HOM05D002342 ORTHO05D002407 1.4e-71 274.2 369 43.9
Eucgr.H02741 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.8e-71 273.9 369 42.8
Lj6C526T11 Lonicera japonica HOM05D002342 ORTHO05D002407 2.3e-71 273.5 371 42.9
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 5.2e-71 272.3 362 43.9
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 6.8e-71 271.9 362 43.9
Hma1.2p1_0383F.1_g140560 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 4.4e-70 269.2 383 43.1
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 4.4e-70 269.2 369 44.4
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 9.9e-70 268.1 363 43.3
Lj6C525G6 Lonicera japonica HOM05D002342 ORTHO05D002407 1.1e-68 264.6 367 42.5
Lalb_Chr12g0205541 Lupinus albus HOM05D002342 ORTHO05D002407 1.1e-68 264.6 377 42.7
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 1.4e-68 264.2 370 44.1
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 2.4e-68 263.5 362 41.7
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 2.1e-67 260.4 341 45.7
Hma1.2p1_0383F.1_g140370 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 3.0e-66 256.5 364 42.6
AUR62018579 Chenopodium quinoa HOM05D002342 ORTHO05D002407 3.9e-66 256.1 366 44.5
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 3.9e-66 256.1 366 44.5
Lj6C523G2 Lonicera japonica HOM05D002342 ORTHO05D002407 5.1e-66 255.8 367 41.4
Nitab4.5_0006215g0010 Nicotiana tabacum HOM05D002342 ORTHO05D002407 5.1e-66 255.8 363 42.4
Lj6C517T2 Lonicera japonica HOM05D002342 ORTHO05D002407 6.6e-66 255.4 366 41.0
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 6.6e-66 255.4 371 40.2
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 6.6e-66 255.4 363 42.4
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 6.6e-66 255.4 365 41.6
Oeu045313.1 Olea europaea HOM05D002342 ORTHO05D002407 8.6e-66 255.0 364 42.0
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 8.6e-66 255.0 371 42.0
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 1.1e-65 254.6 365 43.0
Eucgr.A01634 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.9e-65 253.8 364 39.0
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 5.6e-65 252.3 366 42.6
Atru.chr4.1622 Acer truncatum HOM05D002342 ORTHO05D002407 7.3e-65 251.9 354 41.0
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 7.3e-65 251.9 364 41.8
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 7.3e-65 251.9 355 43.9
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 1.2e-64 251.1 359 44.3
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 2.8e-64 250.0 361 42.7
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 4.7e-64 249.2 373 42.9
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 6.2e-64 248.8 370 41.4
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 1.8e-63 247.3 371 41.0
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.4e-63 246.9 359 41.5
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 4.0e-63 246.1 376 41.2
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 6.8e-63 245.4 356 41.3
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 8.9e-63 245.0 375 39.2
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 1.2e-62 244.6 360 43.3
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 1.2e-62 244.6 359 41.2
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 1.5e-62 244.2 396 40.9
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 2.0e-62 243.8 367 41.1
Lj6C525G9 Lonicera japonica HOM05D002342 ORTHO05D002407 4.4e-62 242.7 350 40.9
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 5.8e-62 242.3 357 42.9
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 5.8e-62 242.3 360 39.7
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 5.8e-62 242.3 359 40.9
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 7.6e-62 241.9 360 42.2
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.3e-61 241.1 359 40.9
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.7e-61 240.7 319 42.6
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 1.7e-61 240.7 374 40.6
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 2.9e-61 240.0 355 41.1
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 2.9e-61 240.0 368 42.4
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 2.9e-61 240.0 361 41.3
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 6.4e-61 238.8 356 41.3
C08p07730 Brassica napus HOM05D002342 ORTHO05D002407 6.4e-61 238.8 356 41.3
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 6.4e-61 238.8 356 41.3
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 1.1e-60 238.0 369 41.7
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 2.4e-60 236.9 362 40.1
Eucgr.H02757 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.2e-60 236.5 367 40.6
Eucgr.H02759 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.2e-60 236.5 366 40.2
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 3.2e-60 236.5 363 40.5
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 3.2e-60 236.5 363 40.5
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 7.1e-60 235.3 358 40.2
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 7.1e-60 235.3 365 37.8
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 9.2e-60 235.0 375 40.5
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 1.6e-59 234.2 358 39.9
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 3.5e-59 233.0 368 40.2
Solyc09g092100.4 Solanum lycopersicum HOM05D002342 ORTHO05D002407 1.7e-58 230.7 364 40.9
VMungo1127G2260 Vigna mungo HOM05D002342 ORTHO05D002407 1.7e-58 230.7 364 39.8
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 3.0e-58 229.9 368 39.4
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 3.3e-57 226.5 405 37.0
CAN.G1333.8 Capsicum annuum HOM05D002342 ORTHO05D002407 1.2e-56 224.6 372 40.1
Eucgr.H02754 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.8e-56 223.4 355 39.2
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 3.6e-56 223.0 372 37.1
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 8.1e-56 221.9 364 39.3
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 8.1e-56 221.9 361 39.6
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 2.4e-55 220.3 356 38.5
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 3.1e-55 219.9 365 39.2
FAN27G2824 Fragaria x ananassa HOM05D002342 ORTHO05D002407 4.4e-54 216.1 322 41.6
MD04G1013100 Malus domestica HOM05D002342 ORTHO05D002407 1.1e-52 211.5 357 38.1
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 1.4e-52 211.1 386 38.1
Eucgr.H02765 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.4e-52 210.3 371 36.9
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 2.4e-52 210.3 359 37.6
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 4.2e-52 209.5 379 36.1
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 5.4e-52 209.1 362 37.0
ATR0829G112 Amborella trichopoda HOM05D002342 ORTHO05D002407 3.5e-51 206.5 362 37.6
Eucgr.H02755 Eucalyptus grandis HOM05D002342 ORTHO05D002407 4.6e-51 206.1 336 37.8
HPP92_028111 Vanilla planifolia HOM05D002342 ORTHO05D002407 3.0e-50 203.4 367 35.1
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 1.5e-49 201.1 336 37.5
Eucgr.H02762 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.9e-49 200.7 361 35.5
ECA233G4033 Erigeron canadensis HOM05D002342 ORTHO05D002407 4.8e-48 196.1 367 37.1
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 8.1e-48 195.3 358 36.3
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 2.4e-47 193.7 326 39.6
SHI00031 Sapria himalayana HOM05D002342 ORTHO05D002407 3.1e-47 193.4 372 35.5
HanXRQChr16g0515531 Helianthus annuus HOM05D000002 ORTHO05D000001 6.9e-47 192.2 358 37.2
Lj6A517T28 Lonicera japonica HOM05D002342 ORTHO05D002407 1.5e-46 191.0 359 36.5
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 2.6e-46 190.3 387 32.0
HPP92_020875 Vanilla planifolia HOM05D002342 ORTHO05D002407 1.4e-44 184.5 338 36.4
HPP92_003865 Vanilla planifolia HOM05D002342 ORTHO05D002407 5.4e-44 182.6 366 33.9
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 3.9e-42 176.4 375 34.7
Hma1.2p1_0383F.1_g140620 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 8.7e-42 175.3 317 37.9
Lj6A516T55 Lonicera japonica HOM05D002342 ORTHO05D002407 7.6e-38 162.2 368 32.1
SEGI_10632 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 1.3e-37 161.4 373 30.0
SEGI_23744 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 1.3e-37 161.4 373 30.0
HanXRQChr02g0059601 Helianthus annuus HOM05D002342 ORTHO05D002407 7.9e-35 152.1 317 36.0
HanXRQChr02g0059621 Helianthus annuus HOM05D002342 ORTHO05D002407 7.9e-35 152.1 317 36.0
vmacro00454 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 1.0e-34 151.8 250 39.6
Carub.0001s0765 Capsella rubella HOM05D002342 ORTHO05D002407 1.3e-34 151.4 170 47.6
Thhalv10006953m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 5.1e-34 149.4 171 48.5
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 5.1e-34 149.4 364 27.7
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.1e-33 148.3 356 32.3
AL1G18710 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 1.5e-33 147.9 141 53.2
Aa31LG9G3860 Aethionema arabicum HOM05D002342 ORTHO05D002407 1.9e-33 147.5 193 45.1
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 3.3e-33 146.7 141 53.2
C05p06400 Brassica napus HOM05D002342 ORTHO05D002407 3.3e-33 146.7 141 53.2
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 3.3e-33 146.7 141 53.2
BolC5t29395H Brassica oleracea HOM05D002342 ORTHO05D002407 4.3e-33 146.4 141 53.2
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 6.2e-32 142.5 430 27.0
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 8.2e-32 142.1 141 48.9
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 8.2e-32 142.1 252 36.5
Sp1g06930 Schrenkiella parvula HOM05D002342 ORTHO05D002407 1.8e-31 141.0 115 59.1
AT1G08300 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 2.4e-31 140.6 141 51.1
PGSC0003DMG402026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 9.0e-31 138.7 617 25.6
BcaB07g34076 Brassica carinata HOM05D000444 ORTHO05D000489 3.4e-30 136.7 133 53.4
Nitab4.5_0006964g0030 Nicotiana tabacum HOM05D002342 ORTHO05D002407 1.7e-29 134.4 288 36.1
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 3.8e-29 133.3 120 51.7
CARHR008160 Cardamine hirsuta HOM05D002342 ORTHO05D002407 9.3e-28 128.6 209 41.1
ECA246G4020 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.2e-27 128.3 116 53.4
CAN.G1333.3 Capsicum annuum HOM05D002342 ORTHO05D002407 7.9e-27 125.6 444 28.2
FvH4_4g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 8.7e-26 122.1 280 31.8
SMO337G0030 Selaginella moellendorffii HOM05D002342 ORTHO05D002407 1.9e-25 120.9 360 27.8
RcHm_v2.0_Chr4g0414341 Rosa chinensis HOM05D002342 ORTHO05D002407 2.5e-25 120.6 241 34.4
FAN17G0157 Fragaria x ananassa HOM05D002342 ORTHO05D002407 6.3e-24 115.9 276 30.8
FvH4_4g13640 Fragaria vesca HOM05D002342 ORTHO05D002407 1.1e-23 115.2 246 32.5
TAR365G0582 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.8e-23 114.4 90 60.0
AagrBONN_evm.TU.Sc2ySwM_228.1729 Anthoceros agrestis HOM05D002342 ORTHO05D002407 6.5e-21 105.9 124 41.1
ECA246G4185 Erigeron canadensis HOM05D002342 ORTHO05D002407 8.5e-21 105.5 118 50.0
TAR365G0886 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.2e-14 85.1 71 60.6
TPR.G357 Trifolium pratense HOM05D038100 ORTHO05D036767 2.0e-14 84.3 224 28.6
CBR_g6414 Chara braunii HOM05D002342 ORTHO05D002407 3.8e-13 80.1 118 38.1
VMungo1383G0106 Vigna mungo HOM05D002342 ORTHO05D002407 1.1e-12 78.6 144 34.7
Lj6A523G32 Lonicera japonica HOM05D002342 ORTHO05D002407 6.7e-10 69.3 100 39.0
TPR.G3986 Trifolium pratense HOM05D002342 ORTHO05D002407 4.4e-09 66.6 121 37.2
Actinidia38751 Actinidia chinensis HOM05D002342 ORTHO05D002407 5.7e-09 66.2 41 68.3
Cre14.g608150 Chlamydomonas reinhardtii HOM05D002342 ORTHO05D002407 6.3e-08 62.8 95 38.9
Medtr4g082295 Medicago truncatula HOM05D002342 ORTHO05D002407 8.2e-08 62.4 95 33.7
RcHm_v2.0_Chr7g0213891 Rosa chinensis HOM05D002342 ORTHO05D002407 8.2e-08 62.4 54 53.7
MCO16G136 Micromonas commoda HOM05D002342 ORTHO05D002407 4.1e-07 60.1 114 30.7
Medtr8g038765 Medicago truncatula HOM05D056746 ORTHO05D002407 3.5e-06 57.0 85 34.1


User provided reference genes

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