Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 2.0e-49 198.7 98 100.0
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 2.0e-20 102.4 59 79.7
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.4e-18 96.3 60 73.3
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 2.4e-18 95.5 58 74.1
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 2.4e-18 95.5 58 79.3
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 3.1e-18 95.1 58 75.9
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 4.1e-18 94.7 60 68.3
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 4.1e-18 94.7 61 68.9
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 5.3e-18 94.4 58 74.1
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 7.0e-18 94.0 59 71.2
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 7.0e-18 94.0 58 72.4
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 9.1e-18 93.6 58 72.4
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.2e-17 93.2 58 74.1
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 1.2e-17 93.2 58 70.7
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.2e-17 93.2 60 71.7
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 1.6e-17 92.8 58 72.4
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 1.6e-17 92.8 58 72.4
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.0e-17 92.4 58 72.4
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.0e-17 92.4 58 72.4
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 2.0e-17 92.4 58 72.4
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 2.0e-17 92.4 58 70.7
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 2.0e-17 92.4 58 72.4
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 2.6e-17 92.0 58 72.4
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 2.6e-17 92.0 58 72.4
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 2.6e-17 92.0 58 72.4
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 2.6e-17 92.0 58 72.4
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 2.6e-17 92.0 58 72.4
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 2.6e-17 92.0 58 70.7
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 2.6e-17 92.0 58 72.4
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 3.5e-17 91.7 58 72.4
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 3.5e-17 91.7 59 69.5
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 3.5e-17 91.7 60 68.3
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 3.5e-17 91.7 58 72.4
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 4.5e-17 91.3 58 70.7
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 4.5e-17 91.3 58 72.4
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 4.5e-17 91.3 58 72.4
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 4.5e-17 91.3 58 70.7
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 5.9e-17 90.9 58 70.7
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 5.9e-17 90.9 58 70.7
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 5.9e-17 90.9 58 70.7
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 5.9e-17 90.9 58 72.4
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 5.9e-17 90.9 58 69.0
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 5.9e-17 90.9 59 67.8
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 7.7e-17 90.5 58 72.4
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 7.7e-17 90.5 58 72.4
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 7.7e-17 90.5 58 70.7
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 7.7e-17 90.5 58 72.4
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 1.0e-16 90.1 58 69.0
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 1.0e-16 90.1 58 69.0
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 1.0e-16 90.1 71 60.6
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 1.0e-16 90.1 58 69.0
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 1.3e-16 89.7 58 70.7
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 1.3e-16 89.7 58 72.4
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 1.3e-16 89.7 58 69.0
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 1.3e-16 89.7 58 69.0
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 1.3e-16 89.7 58 70.7
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 2.2e-16 89.0 58 70.7
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 2.9e-16 88.6 58 70.7
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 2.9e-16 88.6 60 71.7
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 3.8e-16 88.2 58 74.1
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 3.8e-16 88.2 58 67.2
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 3.8e-16 88.2 58 70.7
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 3.8e-16 88.2 58 70.7
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 3.8e-16 88.2 58 67.2
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 5.0e-16 87.8 62 64.5
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 6.5e-16 87.4 58 69.0
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 6.5e-16 87.4 58 69.0
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 8.5e-16 87.0 58 69.0
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 8.5e-16 87.0 58 70.7
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 1.1e-15 86.7 58 65.5
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 1.1e-15 86.7 58 65.5
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.1e-15 86.7 60 63.3
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 1.1e-15 86.7 58 65.5
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 1.5e-15 86.3 58 67.2
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.5e-15 86.3 58 63.8
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 1.9e-15 85.9 58 65.5
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 1.9e-15 85.9 60 60.0
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 2.5e-15 85.5 60 68.3
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 2.5e-15 85.5 58 65.5
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 3.2e-15 85.1 58 65.5
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 3.2e-15 85.1 72 62.5
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 4.2e-15 84.7 56 67.9
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 5.5e-15 84.3 64 62.5
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 7.2e-15 84.0 56 67.9
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 7.2e-15 84.0 58 65.5
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 9.4e-15 83.6 58 63.8
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.2e-14 83.2 62 64.5
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.2e-14 83.2 62 64.5
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 1.6e-14 82.8 58 63.8
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 1.6e-14 82.8 58 63.8
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 1.6e-14 82.8 60 63.3
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 2.7e-14 82.0 60 65.0
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 3.6e-14 81.6 58 58.6
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 3.6e-14 81.6 64 60.9
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 4.7e-14 81.3 58 62.1
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 4.7e-14 81.3 58 62.1
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 6.1e-14 80.9 58 62.1
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.0e-13 80.1 58 63.8
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.0e-13 80.1 58 63.8
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 1.0e-13 80.1 58 63.8
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 1.8e-13 79.3 60 55.0
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 3.0e-13 78.6 59 61.0
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 8.8e-13 77.0 58 62.1
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 8.8e-13 77.0 58 62.1
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 1.5e-12 76.3 82 45.1
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 1.5e-12 76.3 58 60.3
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 1.5e-12 76.3 57 61.4
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 4.4e-12 74.7 59 57.6
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 5.7e-12 74.3 48 62.5
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 1.3e-11 73.2 63 55.6
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 8.3e-11 70.5 94 43.6
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 8.3e-11 70.5 58 58.6
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 1.8e-10 69.3 58 53.4
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 1.6e-09 66.2 41 75.6
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 4.5e-09 64.7 58 46.6
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 5.9e-09 64.3 58 48.3
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 1.0e-08 63.5 53 49.1
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 1.9e-07 59.3 33 75.8
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 9.4e-07 57.0 60 40.0


User provided reference genes

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