Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c30615.2 Carica papaya HOM05D000130 ORTHO05D023253 3.7e-45 184.5 93 100.0
Cpa.g.c32334 Carica papaya HOM05D000130 ORTHO05D000257 2.9e-21 105.1 76 73.7
QL01p055207 Quercus lobata HOM05D000130 ORTHO05D000257 3.2e-12 75.1 58 63.8
Cpa.g.sc1161.1 Carica papaya HOM05D000130 ORTHO05D000257 5.4e-12 74.3 67 62.7
Atru.chr4.2508 Acer truncatum HOM05D000130 ORTHO05D000257 9.3e-12 73.6 58 60.3
Manes.15G026300 Manihot esculenta HOM05D000130 ORTHO05D000257 9.3e-12 73.6 58 60.3
QL01p055280 Quercus lobata HOM05D000130 ORTHO05D000257 2.1e-11 72.4 58 62.1
QL06p003457 Quercus lobata HOM05D000130 ORTHO05D000257 3.5e-11 71.6 58 56.9
QL10p050039 Quercus lobata HOM05D000002 ORTHO05D000001 3.5e-11 71.6 58 62.1
QL06p003495 Quercus lobata HOM05D000130 ORTHO05D000257 4.6e-11 71.2 58 60.3
QL06p003478 Quercus lobata HOM05D000130 ORTHO05D000257 6.0e-11 70.9 58 56.9
CiPaw.02G094900 Carya illinoinensis HOM05D000130 ORTHO05D000257 7.8e-11 70.5 71 54.9
QL10p005147 Quercus lobata HOM05D000130 ORTHO05D000257 7.8e-11 70.5 58 58.6
CiPaw.01G163200 Carya illinoinensis HOM05D000130 ORTHO05D000257 1.0e-10 70.1 52 61.5
QL01p055328 Quercus lobata HOM05D000130 ORTHO05D000257 1.3e-10 69.7 58 60.3
Cfa015614 Carpinus fangiana HOM05D000130 ORTHO05D000257 1.7e-10 69.3 58 58.6
COL.COLO4_06199 Corchorus olitorius HOM05D000130 ORTHO05D000257 1.7e-10 69.3 58 62.1
CiPaw.01G163100 Carya illinoinensis HOM05D000130 ORTHO05D000257 2.3e-10 68.9 58 58.6
FAN07G2837 Fragaria x ananassa HOM05D000130 ORTHO05D000257 3.0e-10 68.6 58 62.1
QL06p003471 Quercus lobata HOM05D000130 ORTHO05D000257 3.9e-10 68.2 59 61.0
QL93p0129_0003 Quercus lobata HOM05D000130 ORTHO05D000257 3.9e-10 68.2 59 61.0
Thecc.04G227000 Theobroma cacao HOM05D000130 ORTHO05D000257 5.1e-10 67.8 58 58.6
TWI09G0126 Tripterygium wilfordii HOM05D000130 ORTHO05D000257 5.1e-10 67.8 58 56.9
Thecc.04G226900 Theobroma cacao HOM05D000130 ORTHO05D000257 6.6e-10 67.4 58 56.9
Haze_00878 Corylus avellana HOM05D001311 ORTHO05D001204 8.7e-10 67.0 58 56.9
TWI73G0649 Tripterygium wilfordii HOM05D000130 ORTHO05D000257 1.1e-09 66.6 58 53.4
arahy.Tifrunner.gnm1.ann1.71BXTT Arachis hypogaea HOM05D000130 ORTHO05D000257 1.5e-09 66.2 48 66.7
arahy.Tifrunner.gnm1.ann1.CB6P6Z Arachis hypogaea HOM05D000130 ORTHO05D000257 1.5e-09 66.2 48 66.7
TWI53G0894 Tripterygium wilfordii HOM05D000130 ORTHO05D000257 1.5e-09 66.2 58 53.4
TWI73G0160 Tripterygium wilfordii HOM05D000130 ORTHO05D000257 1.5e-09 66.2 58 53.4
QL06p003437 Quercus lobata HOM05D000130 ORTHO05D000257 3.3e-09 65.1 58 56.9
Ca_10930_v3 Cicer arietinum L. HOM05D000130 ORTHO05D000257 4.3e-09 64.7 67 53.7
FAN22G2280 Fragaria x ananassa HOM05D000130 ORTHO05D000257 4.3e-09 64.7 75 49.3
Atru.chr4.2511 Acer truncatum HOM05D000130 ORTHO05D000257 5.6e-09 64.3 59 61.0
RcHm_v2.0_Chr4g0416961 Rosa chinensis HOM05D000130 ORTHO05D000257 7.3e-09 63.9 58 56.9
TPR.G5494 Trifolium pratense HOM05D000130 ORTHO05D000257 7.3e-09 63.9 58 56.9
Atru.chr4.2509 Acer truncatum HOM05D000130 ORTHO05D000257 9.6e-09 63.5 56 57.1
Cfa021077 Carpinus fangiana HOM05D000130 ORTHO05D000257 9.6e-09 63.5 77 44.2
CiPaw.01G163400 Carya illinoinensis HOM05D000130 ORTHO05D000257 9.6e-09 63.5 58 51.7
COL.COLO4_06200 Corchorus olitorius HOM05D000130 ORTHO05D000257 9.6e-09 63.5 58 53.4
Sopen09g030480 Solanum pennellii HOM05D000130 ORTHO05D000257 9.6e-09 63.5 53 60.4
HanXRQChr02g0037731 Helianthus annuus HOM05D000130 ORTHO05D000257 1.3e-08 63.2 53 52.8
PGR004G2211 Punica granatum HOM05D000130 ORTHO05D000257 1.3e-08 63.2 58 55.2
Haze_00929 Corylus avellana HOM05D000130 ORTHO05D000257 1.6e-08 62.8 77 44.2
Medtr4g086510 Medicago truncatula HOM05D000130 ORTHO05D000257 1.6e-08 62.8 53 56.6
QL06p003448 Quercus lobata HOM05D000130 ORTHO05D000257 1.6e-08 62.8 58 55.2
PGSC0003DMG400031844 Solanum tuberosum HOM05D000130 ORTHO05D000257 1.6e-08 62.8 53 60.4
Psat6g209640 Pisum sativum HOM05D000130 ORTHO05D000257 2.1e-08 62.4 71 49.3
QL10p005132 Quercus lobata HOM05D000130 ORTHO05D000257 2.1e-08 62.4 49 61.2
TWI09G0626 Tripterygium wilfordii HOM05D000130 ORTHO05D000257 2.1e-08 62.4 58 53.4
TWI09G1435 Tripterygium wilfordii HOM05D000130 ORTHO05D000257 2.1e-08 62.4 54 55.6
Gohir.A09G214000 Gossypium hirsutum HOM05D000130 ORTHO05D000257 2.8e-08 62.0 58 51.7
MD13G1187900 Malus domestica HOM05D000130 ORTHO05D000257 2.8e-08 62.0 58 51.7
MD16G1188500 Malus domestica HOM05D000130 ORTHO05D000257 2.8e-08 62.0 77 45.5
Medtr1g105020 Medicago truncatula HOM05D000130 ORTHO05D000257 2.8e-08 62.0 71 49.3
QL06p003486 Quercus lobata HOM05D000130 ORTHO05D000257 2.8e-08 62.0 70 47.1
TPR.G37986 Trifolium pratense HOM05D000130 ORTHO05D000257 2.8e-08 62.0 53 54.7
TWI73G0358 Tripterygium wilfordii HOM05D000130 ORTHO05D000257 2.8e-08 62.0 100 41.0
Aqoxy2G03343 Aquilegia oxysepala HOM05D000130 ORTHO05D000257 3.6e-08 61.6 55 54.5
Phvul.007G054200 Phaseolus vulgaris HOM05D000130 ORTHO05D000257 3.6e-08 61.6 52 61.5
Duzib212G0756 Durio zibethinus HOM05D000130 ORTHO05D000257 4.8e-08 61.2 58 55.2
RcHm_v2.0_Chr4g0416951 Rosa chinensis HOM05D000130 ORTHO05D000257 4.8e-08 61.2 75 48.0
VMungo1215G2130 Vigna mungo HOM05D000130 ORTHO05D000257 4.8e-08 61.2 67 49.3
CiPaw.01G163300 Carya illinoinensis HOM05D000130 ORTHO05D000257 6.2e-08 60.8 56 55.4
AUR62038644 Chenopodium quinoa HOM05D000130 ORTHO05D000257 6.2e-08 60.8 75 46.7
AUR62043183 Chenopodium quinoa HOM05D000130 ORTHO05D000257 6.2e-08 60.8 75 46.7
Solyc09g075670.1 Solanum lycopersicum HOM05D000130 ORTHO05D000257 6.2e-08 60.8 53 58.5
TWI53G2147 Tripterygium wilfordii HOM05D000130 ORTHO05D000257 6.2e-08 60.8 58 50.0
TWI09G1349 Tripterygium wilfordii HOM05D000130 ORTHO05D000257 8.1e-08 60.5 58 53.4
Ca_24385_v3 Cicer arietinum L. HOM05D000130 ORTHO05D000257 1.1e-07 60.1 94 46.8
Dinv44027 Davidia involucrata HOM05D000130 ORTHO05D023253 1.1e-07 60.1 53 52.8
Gohir.D09G216500 Gossypium hirsutum HOM05D000130 ORTHO05D000257 1.1e-07 60.1 58 50.0
Gorai.006G237000 Gossypium raimondii HOM05D000130 ORTHO05D000257 1.1e-07 60.1 58 50.0
Lsat_1_v5_gn_5_113081 Lactuca sativa HOM05D000130 ORTHO05D000257 1.1e-07 60.1 58 50.0
MD13G1187500 Malus domestica HOM05D000130 ORTHO05D000257 1.1e-07 60.1 79 43.0
Actinidia12980 Actinidia chinensis HOM05D000130 ORTHO05D023253 1.4e-07 59.7 79 41.8
Medtr5g005850 Medicago truncatula HOM05D000130 ORTHO05D000257 1.4e-07 59.7 60 56.7
Prupe.1G155100 Prunus persica HOM05D000130 ORTHO05D000257 1.4e-07 59.7 97 39.2
TWI53G1296 Tripterygium wilfordii HOM05D000130 ORTHO05D000257 1.4e-07 59.7 58 50.0
Aqoxy6G01366 Aquilegia oxysepala HOM05D000130 ORTHO05D000257 1.8e-07 59.3 48 54.2
Dinv38419 Davidia involucrata HOM05D000130 ORTHO05D000257 1.8e-07 59.3 53 50.9
Gohir.D05G204400 Gossypium hirsutum HOM05D000130 ORTHO05D000257 1.8e-07 59.3 52 51.9
Gorai.009G210700 Gossypium raimondii HOM05D000130 ORTHO05D000257 1.8e-07 59.3 52 51.9
Lsat_1_v5_gn_1_20141 Lactuca sativa HOM05D000130 ORTHO05D000257 1.8e-07 59.3 53 54.7
QL06p003429 Quercus lobata HOM05D000130 ORTHO05D000257 1.8e-07 59.3 63 49.2
GSVIVG01017924001 Vitis vinifera HOM05D000130 ORTHO05D000257 1.8e-07 59.3 54 51.9
Lj3C740T5 Lonicera japonica HOM05D000130 ORTHO05D000257 2.4e-07 58.9 53 52.8
Nn1g05842 Nelumbo nucifera HOM05D000130 ORTHO05D000257 2.4e-07 58.9 73 43.8
Phvul.003G295200 Phaseolus vulgaris HOM05D000130 ORTHO05D000257 2.4e-07 58.9 53 49.1
EL10As3g23352 Beta vulgaris HOM05D000130 ORTHO05D000257 3.1e-07 58.5 55 54.5
Lj5A207T80 Lonicera japonica HOM05D000130 ORTHO05D000257 3.1e-07 58.5 53 49.1
Lj5g0003504 Lotus japonicus HOM05D000130 ORTHO05D000257 3.1e-07 58.5 60 50.0
Nitab4.5_0000321g0070 Nicotiana tabacum HOM05D000130 ORTHO05D000257 3.1e-07 58.5 73 46.6
CAN.G668.21 Capsicum annuum HOM05D000130 ORTHO05D000257 4.0e-07 58.2 90 38.9
Cc03_g03430 Coffea canephora HOM05D000130 ORTHO05D000257 4.0e-07 58.2 75 48.0
Prupe.1G154900 Prunus persica HOM05D000130 ORTHO05D000257 4.0e-07 58.2 56 53.6
QL06p003453 Quercus lobata HOM05D000130 ORTHO05D000257 4.0e-07 58.2 58 53.4
TWI53G0487 Tripterygium wilfordii HOM05D000130 ORTHO05D000257 4.0e-07 58.2 58 50.0
Glyma.10G250300 Glycine max HOM05D000130 ORTHO05D000257 5.3e-07 57.8 54 53.7
Gohir.A05G201300 Gossypium hirsutum HOM05D000130 ORTHO05D000257 5.3e-07 57.8 52 50.0
Lsat_1_v5_gn_7_87261 Lactuca sativa HOM05D000130 ORTHO05D000257 5.3e-07 57.8 75 45.3
MD16G1188100 Malus domestica HOM05D000130 ORTHO05D000257 5.3e-07 57.8 79 40.5
Cpa.g.sc2506.1 Carica papaya HOM05D000130 ORTHO05D000257 6.9e-07 57.4 59 55.9
ECA247G3972 Erigeron canadensis HOM05D000130 ORTHO05D000257 6.9e-07 57.4 53 49.1
Hma1.2p1_0995F.1_g245650 Hydrangea macrophylla HOM05D000130 ORTHO05D000257 6.9e-07 57.4 70 44.3
TWI09G1629 Tripterygium wilfordii HOM05D000130 ORTHO05D000257 6.9e-07 57.4 58 50.0
Cc03_g03440 Coffea canephora HOM05D000130 ORTHO05D000257 9.0e-07 57.0 53 52.8
COL.COLO4_32677 Corchorus olitorius HOM05D000130 ORTHO05D000257 9.0e-07 57.0 53 45.3
MD13G1187400 Malus domestica HOM05D000130 ORTHO05D000257 9.0e-07 57.0 56 50.0
MD16G1188400 Malus domestica HOM05D000130 ORTHO05D000257 9.0e-07 57.0 77 41.6
Psat4g211280 Pisum sativum HOM05D000130 ORTHO05D000257 9.0e-07 57.0 63 54.0
Prupe.8G121200 Prunus persica HOM05D000130 ORTHO05D000257 9.0e-07 57.0 102 35.3
RcHm_v2.0_Chr4g0416841 Rosa chinensis HOM05D000130 ORTHO05D000257 9.0e-07 57.0 76 47.4
Lalb_Chr09g0319721 Lupinus albus HOM05D000130 ORTHO05D000257 1.2e-06 56.6 48 62.5
Medtr7g056207 Medicago truncatula HOM05D000130 ORTHO05D000257 1.2e-06 56.6 51 56.9
TPR.G30835 Trifolium pratense HOM05D000130 ORTHO05D000257 1.2e-06 56.6 71 39.4
TAR376G0299 Trochodendron aralioides HOM05D000130 ORTHO05D000257 1.2e-06 56.6 77 45.5
MSTRG.24324 Avicennia marina HOM05D000130 ORTHO05D000257 1.5e-06 56.2 53 49.1
Duzib116G0256 Durio zibethinus HOM05D000130 ORTHO05D000257 1.5e-06 56.2 52 48.1
ECA236G0401 Erigeron canadensis HOM05D000130 ORTHO05D000257 1.5e-06 56.2 103 35.0
FvH4_4g15000 Fragaria vesca HOM05D000130 ORTHO05D000257 1.5e-06 56.2 43 67.4
Glyma.02G134000 Glycine max HOM05D000130 ORTHO05D000257 1.5e-06 56.2 53 47.2
Phvul.002G047500 Phaseolus vulgaris HOM05D000130 ORTHO05D000257 1.5e-06 56.2 56 50.0
CANSAT78G0470 Cannabis sativa HOM05D000130 ORTHO05D000257 2.0e-06 55.8 63 52.4
CAN.G668.18 Capsicum annuum HOM05D000130 ORTHO05D000257 2.0e-06 55.8 90 37.8
Cpa.g.sc2506.2 Carica papaya HOM05D000130 ORTHO05D000257 2.0e-06 55.8 62 51.6
Lj6A597T90 Lonicera japonica HOM05D000130 ORTHO05D000257 2.0e-06 55.8 49 55.1
Lj4g0005339 Lotus japonicus HOM05D000130 ORTHO05D000257 2.0e-06 55.8 77 42.9
Manes.07G081600 Manihot esculenta HOM05D000130 ORTHO05D000257 2.0e-06 55.8 56 46.4
Prupe.1G155200 Prunus persica HOM05D000130 ORTHO05D000257 2.0e-06 55.8 75 44.0
VMungo1127G2052 Vigna mungo HOM05D000130 ORTHO05D000257 2.0e-06 55.8 74 45.9
Actinidia36980 Actinidia chinensis HOM05D000130 ORTHO05D000257 2.6e-06 55.5 55 52.7
Ca_18671_v3 Cicer arietinum L. HOM05D000130 ORTHO05D000257 2.6e-06 55.5 53 49.1
Nitab4.5_0000149g0240 Nicotiana tabacum HOM05D000130 ORTHO05D000257 2.6e-06 55.5 56 51.8
Eucgr.H03555 Eucalyptus grandis HOM05D000130 ORTHO05D000257 3.4e-06 55.1 54 51.9
Gorai.005G103700 Gossypium raimondii HOM05D000130 ORTHO05D000257 3.4e-06 55.1 52 48.1
Lj3C740T7 Lonicera japonica HOM05D000130 ORTHO05D000257 3.4e-06 55.1 53 49.1
Medtr4g086480 Medicago truncatula HOM05D000130 ORTHO05D000257 3.4e-06 55.1 71 38.0
Nn4g26257 Nelumbo nucifera HOM05D000130 ORTHO05D000257 3.4e-06 55.1 53 52.8
TPR.G30832 Trifolium pratense HOM05D000130 ORTHO05D000257 3.4e-06 55.1 106 32.1
TPR.G30836 Trifolium pratense HOM05D000130 ORTHO05D000257 3.4e-06 55.1 68 41.2
CSS0009536 Camellia sinensis var. sinensis HOM05D000130 ORTHO05D000257 4.4e-06 54.7 70 38.6
CSS0043542 Camellia sinensis var. sinensis HOM05D000130 ORTHO05D000257 4.4e-06 54.7 94 37.2
Gohir.D02G092300 Gossypium hirsutum HOM05D000130 ORTHO05D000257 4.4e-06 54.7 52 46.2
MD10G1091900 Malus domestica HOM05D000130 ORTHO05D000257 4.4e-06 54.7 55 49.1
Peaxi162Scf00769g00416 Petunia axillaris HOM05D000130 ORTHO05D000257 4.4e-06 54.7 53 54.7
VMungo1215G0858 Vigna mungo HOM05D000130 ORTHO05D000257 4.4e-06 54.7 56 50.0
Aqoxy6G01429 Aquilegia oxysepala HOM05D000130 ORTHO05D000257 5.8e-06 54.3 48 50.0
Ca_18672_v3 Cicer arietinum L. HOM05D000130 ORTHO05D000257 5.8e-06 54.3 71 39.4
Cc03_g03450 Coffea canephora HOM05D000130 ORTHO05D000257 5.8e-06 54.3 73 43.8
MBI02_g17344_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D000257 5.8e-06 54.3 75 41.3
PSO302G0158 Papaver somniferum HOM05D000130 ORTHO05D000257 5.8e-06 54.3 58 51.7
Psat7g123480 Pisum sativum HOM05D000130 ORTHO05D000257 5.8e-06 54.3 70 40.0
Cpa.g.sc62.31 Carica papaya HOM05D000130 ORTHO05D000257 7.6e-06 53.9 56 48.2
Duzib093G1637 Durio zibethinus HOM05D000130 ORTHO05D000257 7.6e-06 53.9 52 46.2
PGR042G3515 Punica granatum HOM05D000130 ORTHO05D000257 7.6e-06 53.9 75 40.0
Thecc.08G011600 Theobroma cacao HOM05D000130 ORTHO05D000257 7.6e-06 53.9 52 48.1
TWI73G0172 Tripterygium wilfordii HOM05D000130 ORTHO05D000257 7.6e-06 53.9 58 46.6
Eucgr.H03554 Eucalyptus grandis HOM05D000130 ORTHO05D000257 9.9e-06 53.5 60 48.3
FvH4_4g15020 Fragaria vesca HOM05D000130 ORTHO05D000257 9.9e-06 53.5 55 52.7
FAN07G2543 Fragaria x ananassa HOM05D000130 ORTHO05D000257 9.9e-06 53.5 55 52.7
FAN12G3340 Fragaria x ananassa HOM05D000130 ORTHO05D000257 9.9e-06 53.5 55 52.7
FAN15G2112 Fragaria x ananassa HOM05D000130 ORTHO05D000257 9.9e-06 53.5 56 48.2
Glyma.07G211100 Glycine max HOM05D000130 ORTHO05D000257 9.9e-06 53.5 68 38.2
Lsat_1_v5_gn_7_87241 Lactuca sativa HOM05D000130 ORTHO05D000257 9.9e-06 53.5 75 42.7
SGA_v2.0_scaffold14G07030 Striga asiatica HOM05D000130 ORTHO05D000257 9.9e-06 53.5 51 45.1
TPR.G30831 Trifolium pratense HOM05D000130 ORTHO05D000257 9.9e-06 53.5 68 38.2
TWI73G0580 Tripterygium wilfordii HOM05D000130 ORTHO05D000257 9.9e-06 53.5 58 48.3
TAR623G0594 Trochodendron aralioides HOM05D000130 ORTHO05D000257 9.9e-06 53.5 52 51.9


User provided reference genes

Program Settings