Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c30120 Carica papaya HOM05D001474 ORTHO05D001461 2.2e-128 462.2 218 100.0
Thecc.01G379400 Theobroma cacao HOM05D001474 ORTHO05D001461 5.8e-73 278.1 158 81.6
CSS0019526 Camellia sinensis var. sinensis HOM05D001474 ORTHO05D001461 1.9e-71 273.1 159 79.2
Manes.01G267700 Manihot esculenta HOM05D001474 ORTHO05D001461 7.1e-71 271.2 161 77.6
CANSAT56G4331 Cannabis sativa HOM05D001474 ORTHO05D001461 9.3e-71 270.8 160 76.9
CiPaw.13G034300 Carya illinoinensis HOM05D001474 ORTHO05D001461 6.0e-70 268.1 148 81.8
Hma1.2p1_0072F.1_g038270 Hydrangea macrophylla HOM05D001474 ORTHO05D001461 2.3e-69 266.2 159 76.7
QL04p040000 Quercus lobata HOM05D001474 ORTHO05D001461 3.9e-69 265.4 160 76.2
Sopen01g036820 Solanum pennellii HOM05D001474 ORTHO05D001461 5.1e-69 265.0 159 77.4
CSS0044636 Camellia sinensis var. sinensis HOM05D001474 ORTHO05D001461 2.5e-68 262.7 156 77.6
Gohir.A12G101300 Gossypium hirsutum HOM05D001474 ORTHO05D001461 1.3e-67 260.4 158 75.9
PGSC0003DMG400026008 Solanum tuberosum HOM05D001474 ORTHO05D001461 1.6e-67 260.0 159 76.1
Rhsim07G0029600 Rhododendron simsii HOM05D001474 ORTHO05D001461 2.1e-67 259.6 159 74.2
CAN.G911.5 Capsicum annuum HOM05D001474 ORTHO05D001461 3.6e-67 258.8 159 75.5
Cfa011193 Carpinus fangiana HOM05D001474 ORTHO05D001461 4.8e-67 258.5 160 73.8
Duzib138G1270 Durio zibethinus HOM05D001474 ORTHO05D001461 4.8e-67 258.5 158 75.9
GSVIVG01027655001 Vitis vinifera HOM05D001474 ORTHO05D001461 4.8e-67 258.5 147 79.6
Ciclev10020473m.g Citrus clementina HOM05D001474 ORTHO05D001461 1.1e-66 257.3 155 74.8
Duzib138G0487 Durio zibethinus HOM05D001474 ORTHO05D001461 1.1e-66 257.3 158 75.3
MSTRG.17173 Avicennia marina HOM05D001474 ORTHO05D001461 1.4e-66 256.9 155 75.5
Gorai.008G113300 Gossypium raimondii HOM05D001474 ORTHO05D001461 1.4e-66 256.9 158 75.3
CsaV3_3G009840 Cucumis sativus L. HOM05D001474 ORTHO05D001461 2.4e-66 256.1 155 72.9
Gohir.D12G104200 Gossypium hirsutum HOM05D001474 ORTHO05D001461 4.0e-66 255.4 158 75.3
TWI14G0338 Tripterygium wilfordii HOM05D001474 ORTHO05D001461 4.0e-66 255.4 159 74.2
TWI14G0591 Tripterygium wilfordii HOM05D001474 ORTHO05D001461 4.0e-66 255.4 159 74.2
MELO3C006206.2 Cucumis melo HOM05D001474 ORTHO05D001461 5.3e-66 255.0 155 72.3
Eucgr.E01451 Eucalyptus grandis HOM05D001474 ORTHO05D001461 5.3e-66 255.0 159 74.8
TWI14G0834 Tripterygium wilfordii HOM05D001474 ORTHO05D001461 9.0e-66 254.2 148 77.0
THA.LOC104802454 Tarenaya hassleriana HOM05D001474 ORTHO05D001461 1.5e-65 253.4 160 71.2
Dinv44138 Davidia involucrata HOM05D000036 ORTHO05D001461 2.0e-65 253.1 146 76.0
Sed0006162 Sechium edule HOM05D001474 ORTHO05D001461 5.8e-65 251.5 150 74.0
TAR375G0828 Trochodendron aralioides HOM05D001474 ORTHO05D001461 5.8e-65 251.5 159 73.0
Duzib133G0123 Durio zibethinus HOM05D001474 ORTHO05D001461 9.9e-65 250.8 167 70.1
arahy.Tifrunner.gnm1.ann1.8H5FPK Arachis hypogaea HOM05D001474 ORTHO05D001461 2.2e-64 249.6 152 72.4
Sp4g27270 Schrenkiella parvula HOM05D001474 ORTHO05D001461 2.2e-64 249.6 148 73.0
SpUn0031_0050 Schrenkiella parvula HOM05D001474 ORTHO05D001461 2.2e-64 249.6 148 73.0
Prupe.2G141300 Prunus persica HOM05D001474 ORTHO05D001461 3.8e-64 248.8 159 73.6
COL.COLO4_12520 Corchorus olitorius HOM05D001474 ORTHO05D001461 4.9e-64 248.4 158 71.5
Potri.014G067300 Populus trichocarpa HOM05D001474 ORTHO05D001461 6.4e-64 248.1 150 74.0
vmacro13424 Vaccinium macrocarpon HOM05D001474 ORTHO05D001461 6.4e-64 248.1 186 64.5
Ca_18225_v3 Cicer arietinum L. HOM05D001474 ORTHO05D001461 8.4e-64 247.7 148 75.7
Glyma.01G138300 Glycine max HOM05D001474 ORTHO05D001461 8.4e-64 247.7 148 75.7
Atru.chr5.276 Acer truncatum HOM05D001474 ORTHO05D001461 1.4e-63 246.9 155 72.9
Thhalv10001475m.g Eutrema salsugineum HOM05D001474 ORTHO05D001461 1.4e-63 246.9 155 69.7
Glyma.03G028800 Glycine max HOM05D001474 ORTHO05D001461 1.9e-63 246.5 148 75.0
PGR042G1031 Punica granatum HOM05D001474 ORTHO05D001461 1.9e-63 246.5 159 71.7
Cc02_g24180 Coffea canephora HOM05D001474 ORTHO05D001461 2.4e-63 246.1 155 71.6
AT2G45240 Arabidopsis thaliana HOM05D001474 ORTHO05D001461 7.1e-63 244.6 155 68.4
Migut.B01612 Erythranthe guttata HOM05D001474 ORTHO05D001461 7.1e-63 244.6 160 70.6
Carub.0004s2785 Capsella rubella HOM05D001474 ORTHO05D001461 9.3e-63 244.2 148 70.3
SGA_v2.0_scaffold153G36983 Striga asiatica HOM05D001474 ORTHO05D001461 9.3e-63 244.2 155 71.0
Lj3g0013625 Lotus japonicus HOM05D001474 ORTHO05D001461 1.2e-62 243.8 155 72.3
MD07G1118600 Malus domestica HOM05D001474 ORTHO05D001461 1.6e-62 243.4 160 72.5
EL10Ac1g00863 Beta vulgaris HOM05D001474 ORTHO05D001461 2.1e-62 243.0 159 70.4
A05p05230 Brassica napus HOM05D001474 ORTHO05D001461 2.7e-62 242.7 155 69.0
C04p06150 Brassica napus HOM05D001474 ORTHO05D001461 2.7e-62 242.7 155 69.7
BraA05t19493Z Brassica rapa HOM05D001474 ORTHO05D001461 2.7e-62 242.7 155 69.0
VMungo0331G1224 Vigna mungo HOM05D001474 ORTHO05D001461 2.7e-62 242.7 148 74.3
SalBow5G1473 Salvia bowleyana HOM05D001474 ORTHO05D001461 3.5e-62 242.3 147 72.8
BcaB02g08948 Brassica carinata HOM05D001474 ORTHO05D001461 6.0e-62 241.5 155 71.6
MD07G1118400 Malus domestica HOM05D001474 ORTHO05D001461 6.0e-62 241.5 155 72.3
Solyc01g091070.3 Solanum lycopersicum HOM05D001474 ORTHO05D001461 6.0e-62 241.5 135 80.7
BcaC02g12234 Brassica carinata HOM05D001474 ORTHO05D001461 1.0e-61 240.7 148 71.6
BolC4t22239H Brassica oleracea HOM05D001474 ORTHO05D001461 1.0e-61 240.7 148 71.6
Nn1g01106 Nelumbo nucifera HOM05D001474 ORTHO05D001461 1.3e-61 240.4 144 73.6
FvH4_7g11350 Fragaria vesca HOM05D001474 ORTHO05D001461 1.8e-61 240.0 148 73.6
FAN06G0799 Fragaria x ananassa HOM05D001474 ORTHO05D001461 1.8e-61 240.0 148 73.6
Phvul.010G080500 Phaseolus vulgaris HOM05D001474 ORTHO05D001461 1.8e-61 240.0 155 72.9
RcHm_v2.0_Chr1g0349651 Rosa chinensis HOM05D001474 ORTHO05D001461 1.8e-61 240.0 148 75.7
TPR.G7601 Trifolium pratense HOM05D001474 ORTHO05D001461 1.8e-61 240.0 148 73.0
AL4G44350 Arabidopsis lyrata HOM05D001474 ORTHO05D001461 3.0e-61 239.2 155 67.1
ECA236G0927 Erigeron canadensis HOM05D001474 ORTHO05D001461 3.0e-61 239.2 156 70.5
RcHm_v2.0_Chr1g0349561 Rosa chinensis HOM05D001474 ORTHO05D001461 3.0e-61 239.2 148 75.7
arahy.Tifrunner.gnm1.ann1.931R8V Arachis hypogaea HOM05D001474 ORTHO05D001461 6.7e-61 238.0 161 67.7
FAN06G4417 Fragaria x ananassa HOM05D000009 ORTHO05D001461 6.7e-61 238.0 148 73.0
Aa31LG1G26780 Aethionema arabicum HOM05D001474 ORTHO05D001461 8.7e-61 237.7 155 66.5
Sc23g0001150 Simmondsia chinensis HOM05D001474 ORTHO05D001461 8.7e-61 237.7 152 70.4
FAN10G3912 Fragaria x ananassa HOM05D001474 ORTHO05D001461 1.1e-60 237.3 148 73.0
CARHR140460 Cardamine hirsuta HOM05D001474 ORTHO05D001461 1.5e-60 236.9 155 65.8
ClCG05G002410 Citrullus lanatus HOM05D001474 ORTHO05D001461 1.9e-60 236.5 141 73.0
FvH4_7g11370 Fragaria vesca HOM05D001474 ORTHO05D001461 1.9e-60 236.5 148 72.3
Rhsim07G0029400 Rhododendron simsii HOM05D001474 ORTHO05D001461 1.9e-60 236.5 136 76.5
CiPaw.13G034400 Carya illinoinensis HOM05D001474 ORTHO05D001461 2.5e-60 236.1 131 81.7
Lj7A531T58 Lonicera japonica HOM05D001474 ORTHO05D001461 2.5e-60 236.1 156 71.2
MD02G1206000 Malus domestica HOM05D001474 ORTHO05D001461 4.3e-60 235.3 148 72.3
RhsimUnG0228100 Rhododendron simsii HOM05D001474 ORTHO05D001461 5.6e-60 235.0 136 75.7
MSTRG.20735 Avicennia marina HOM05D001474 ORTHO05D001461 7.4e-60 234.6 148 71.6
Psat7g230720 Pisum sativum HOM05D001474 ORTHO05D001461 1.3e-59 233.8 149 71.8
Lalb_Chr07g0190021 Lupinus albus HOM05D001474 ORTHO05D001461 1.1e-58 230.7 148 70.3
RcHm_v2.0_Chr7g0223151 Rosa chinensis HOM05D000873 ORTHO05D001461 1.8e-58 229.9 147 70.7
CDE04G1340 Ceratophyllum demersum HOM05D001474 ORTHO05D001461 4.0e-58 228.8 152 67.8
Lalb_Chr12g0208091 Lupinus albus HOM05D001474 ORTHO05D001461 4.0e-58 228.8 149 68.5
SalBow5G3084 Salvia bowleyana HOM05D001474 ORTHO05D001461 1.5e-57 226.9 141 71.6
FAN13G2011 Fragaria x ananassa HOM05D001474 ORTHO05D001461 2.6e-57 226.1 163 66.3
PSO170G4369 Papaver somniferum HOM05D001474 ORTHO05D001461 2.6e-57 226.1 148 69.6
PSO782G5252 Papaver somniferum HOM05D001474 ORTHO05D001461 2.6e-57 226.1 148 70.3
AUR62004185 Chenopodium quinoa HOM05D001474 ORTHO05D001461 5.8e-57 224.9 151 66.2
Haze_02654 Corylus avellana HOM05D001474 ORTHO05D001461 5.8e-57 224.9 160 68.1
AUR62013685 Chenopodium quinoa HOM05D001474 ORTHO05D001461 1.7e-56 223.4 146 68.5
Migut.O00813 Erythranthe guttata HOM05D001474 ORTHO05D001461 3.8e-56 222.2 135 74.1
FAN08G3567 Fragaria x ananassa HOM05D001474 ORTHO05D001461 1.4e-55 220.3 153 68.0
FAN01G1996 Fragaria x ananassa HOM05D000009 ORTHO05D001461 3.2e-55 219.2 155 67.1
MBI04_g11447_MAGBIO Magnolia biondii HOM05D001474 ORTHO05D001461 1.2e-54 217.2 175 61.1
Oeu037931.3 Olea europaea HOM05D001474 ORTHO05D001461 2.1e-54 216.5 178 57.9
Peaxi162Scf00013g02918 Petunia axillaris HOM05D001474 ORTHO05D001461 6.0e-54 214.9 152 67.1
HPP92_022304 Vanilla planifolia HOM05D001474 ORTHO05D001461 1.0e-53 214.2 160 63.8
HanXRQChr06g0169451 Helianthus annuus HOM05D001474 ORTHO05D001461 1.3e-53 213.8 137 71.5
Zm00001eb220650 Zea mays HOM05D001474 ORTHO05D001461 8.7e-53 211.1 157 64.3
Aqoxy7G00709 Aquilegia oxysepala HOM05D001474 ORTHO05D001461 1.5e-52 210.3 139 69.1
RcHm_v2.0_Chr4g0403521 Rosa chinensis HOM05D001474 ORTHO05D001461 9.6e-52 207.6 180 60.6
Os10g0508400 Oryza sativa ssp. japonica HOM05D001474 ORTHO05D001461 1.3e-51 207.2 153 62.1
Sabra14G0047300 Salix brachista HOM05D001474 ORTHO05D001461 1.8e-50 203.4 156 62.2
FAN10G3888 Fragaria x ananassa HOM05D001474 ORTHO05D001461 6.9e-50 201.4 148 65.5
Lsat_1_v5_gn_7_9300 Lactuca sativa HOM05D001474 ORTHO05D001461 6.9e-50 201.4 156 64.1
Phvul.010G080400 Phaseolus vulgaris HOM05D001474 ORTHO05D001461 6.9e-50 201.4 130 70.0
Nitab4.5_0010730g0010 Nicotiana tabacum HOM05D001474 ORTHO05D001461 4.9e-48 195.3 118 75.4
Pp3c21_22170 Physcomitrium patens HOM05D001474 ORTHO05D001461 1.4e-47 193.7 157 58.6
Hund17036 Selenicereus undatus HOM05D001474 ORTHO05D001461 1.9e-47 193.4 148 62.2
MBI12_g24113_MAGBIO Magnolia biondii HOM05D002462 ORTHO05D002893 2.5e-47 193.0 160 58.8
Mapoly0013s0165 Marchantia polymorpha HOM05D001474 ORTHO05D001461 4.2e-47 192.2 159 54.7
SMO171G0038 Selaginella moellendorffii HOM05D001474 ORTHO05D001461 8.7e-45 184.5 151 54.3
DCAR_008547 Daucus carota HOM05D001474 ORTHO05D001461 1.5e-44 183.7 118 73.7
VMungo0331G0694 Vigna mungo HOM05D001474 ORTHO05D001461 1.3e-43 180.6 117 70.1
vmacro13425 Vaccinium macrocarpon HOM05D001474 ORTHO05D001461 1.1e-42 177.6 104 72.1
CBR_g18681 Chara braunii HOM05D001474 ORTHO05D001461 1.0e-40 171.0 177 47.5
AagrBONN_evm.TU.Sc2ySwM_368.1141 Anthoceros agrestis HOM05D001474 ORTHO05D001461 2.2e-40 169.9 148 54.1
unitig_26.g8899 Utricularia gibba HOM05D001474 ORTHO05D001461 1.4e-39 167.2 142 54.9
Nitab4.5_0000457g0040 Nicotiana tabacum HOM05D001474 ORTHO05D001461 1.3e-37 160.6 86 80.2
Cre06.g279750 Chlamydomonas reinhardtii HOM05D001474 ORTHO05D001461 3.2e-31 139.4 146 43.2
SalBow1G0726 Salvia bowleyana HOM05D001474 ORTHO05D050792 2.0e-25 120.2 80 63.8
SEGI_25320 Sequoiadendron giganteum HOM05D001474 ORTHO05D001461 5.9e-25 118.6 82 58.5
Zm00001eb043920 Zea mays HOM05D001474 ORTHO05D001461 7.2e-23 111.7 157 41.4
Dinv32361 Davidia involucrata HOM05D001474 ORTHO05D001461 7.9e-22 108.2 56 83.9
Pp3c21_22630 Physcomitrium patens HOM05D001474 ORTHO05D001461 6.7e-21 105.1 77 61.0
SHI13526 Sapria himalayana HOM05D001474 ORTHO05D001461 2.6e-20 103.2 180 37.2
FAN03G2074 Fragaria x ananassa HOM05D001474 ORTHO05D001461 6.3e-19 98.6 142 40.1
Haze_26360 Corylus avellana HOM05D001474 ORTHO05D001461 6.1e-14 82.0 145 35.9
RcHm_v2.0_Chr1g0360371 Rosa chinensis HOM05D001742 ORTHO05D001689 4.0e-13 79.3 62 62.9
SalBow1G0906 Salvia bowleyana HOM05D001474 ORTHO05D050792 5.7e-12 75.5 50 66.0
AUR62027685 Chenopodium quinoa HOM05D001474 ORTHO05D138152 1.2e-09 67.8 57 52.6
MCO09G086 Micromonas commoda HOM05D001474 ORTHO05D001461 3.8e-08 62.8 65 47.7


User provided reference genes

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