Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 1.8e-160 569.3 319 100.0
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 4.6e-111 405.2 253 90.5
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.4e-51 207.6 317 42.0
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 5.2e-46 189.1 311 45.3
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 1.5e-45 187.6 311 45.0
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 2.0e-45 187.2 315 41.9
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 2.8e-44 183.3 293 43.0
THA.LOC104803513 Tarenaya hassleriana HOM05D004960 ORTHO05D004696 1.4e-43 181.0 315 39.0
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 2.7e-42 176.8 301 40.9
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 2.9e-41 173.3 318 39.9
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 4.3e-40 169.5 295 42.4
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 4.7e-39 166.0 309 38.8
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 8.0e-39 165.2 300 39.0
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 8.0e-39 165.2 323 38.4
AT2G18690 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 3.0e-38 163.3 312 35.9
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 2.6e-37 160.2 314 38.2
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 2.6e-37 160.2 245 43.3
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 3.4e-37 159.8 295 38.0
A09p12040 Brassica napus HOM05D004960 ORTHO05D004696 4.4e-37 159.5 309 37.2
BraA09t36847Z Brassica rapa HOM05D004960 ORTHO05D004696 4.4e-37 159.5 309 37.2
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 3.7e-36 156.4 309 36.6
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 3.7e-36 156.4 309 36.6
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 3.7e-36 156.4 316 37.7
Thhalv10022778m.g Eutrema salsugineum HOM05D004960 ORTHO05D004696 4.9e-36 156.0 313 38.0
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 1.4e-35 154.5 309 36.6
AL3G52080 Arabidopsis lyrata HOM05D004960 ORTHO05D004696 1.8e-35 154.1 309 36.2
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 9.2e-35 151.8 320 36.9
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 9.2e-35 151.8 300 37.7
BcaB07g31648 Brassica carinata HOM05D004960 ORTHO05D004696 1.2e-34 151.4 309 35.6
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 3.5e-34 149.8 310 36.5
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 1.0e-33 148.3 322 35.7
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 1.3e-33 147.9 309 36.6
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 1.3e-33 147.9 309 36.6
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 1.7e-33 147.5 237 43.9
BraA04t16256Z Brassica rapa HOM05D004960 ORTHO05D004696 1.6e-31 141.0 315 35.2
CARHR109270 Cardamine hirsuta HOM05D004960 ORTHO05D004696 1.0e-30 138.3 299 35.8
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 1.4e-30 137.9 307 35.2
A06p33120 Brassica napus HOM05D004960 ORTHO05D004696 3.1e-30 136.7 316 34.5
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 4.0e-30 136.3 288 36.1
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 4.0e-30 136.3 309 35.9
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 1.5e-29 134.4 270 37.0
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 2.0e-29 134.0 312 34.6
C03p59340 Brassica napus HOM05D004960 ORTHO05D004696 3.4e-29 133.3 319 34.2
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 1.7e-28 131.0 301 34.6
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 1.7e-28 131.0 301 34.6
AT2G18680 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 8.3e-28 128.6 287 35.5
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 1.1e-27 128.3 248 37.5
BcaC01g02853 Brassica carinata HOM05D004960 ORTHO05D004696 1.4e-27 127.9 319 33.9
A04p05570 Brassica napus HOM05D004960 ORTHO05D004696 1.4e-27 127.9 315 34.3
BolC3t18198H Brassica oleracea HOM05D004960 ORTHO05D004696 1.4e-27 127.9 319 33.9
BraA06t26242Z Brassica rapa HOM05D004960 ORTHO05D004696 1.4e-27 127.9 314 34.1
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 2.7e-26 123.6 301 31.9
Sp3g32170 Schrenkiella parvula HOM05D004960 ORTHO05D004696 4.6e-26 122.9 287 34.8
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 6.0e-26 122.5 311 34.4
BcaC02g09087 Brassica carinata HOM05D004960 ORTHO05D004696 1.0e-25 121.7 308 34.1
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 3.9e-25 119.8 318 34.0
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 8.6e-25 118.6 310 32.9
Carub.0003s3294 Capsella rubella HOM05D004960 ORTHO05D004696 3.3e-24 116.7 287 34.8
Duzib168G0188 Durio zibethinus HOM05D004960 ORTHO05D004696 4.3e-24 116.3 292 35.6
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 5.6e-24 115.9 312 31.1
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 5.6e-24 115.9 312 31.1
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 9.5e-24 115.2 297 33.3
BcaB08g34825 Brassica carinata HOM05D004960 ORTHO05D004696 1.2e-23 114.8 317 32.5
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.2e-23 114.8 295 32.5
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.2e-23 114.8 295 32.5
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 4.7e-23 112.8 264 39.4
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.4e-22 111.3 307 33.9
Carub.0003s2660 Capsella rubella HOM05D004960 ORTHO05D004696 6.8e-22 109.0 230 37.0
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 6.8e-22 109.0 292 31.5
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.5e-21 107.8 308 30.8
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 1.7e-20 104.4 323 32.5
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 3.7e-20 103.2 259 34.7
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 4.9e-20 102.8 287 31.4
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 4.9e-20 102.8 302 31.5
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 1.1e-19 101.7 295 30.2
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 5.4e-19 99.4 293 28.3
HanXRQChr03g0068481 Helianthus annuus HOM05D004960 ORTHO05D004696 5.4e-19 99.4 302 29.8
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 2.1e-18 97.4 299 34.4
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 4.6e-18 96.3 293 32.4
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 1.7e-17 94.4 316 28.2
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 1.7e-17 94.4 300 33.3
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 3.0e-17 93.6 308 28.2
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 3.9e-17 93.2 298 31.9
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 6.6e-17 92.4 318 31.4
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 8.6e-17 92.0 321 31.8
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.1e-16 91.7 319 27.9
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 3.3e-16 90.1 309 28.8
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 4.3e-16 89.7 312 29.2
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 7.3e-16 89.0 326 28.8
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 1.6e-15 87.8 319 32.3
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.1e-14 85.1 317 31.2
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 4.0e-14 83.2 357 27.7
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 5.2e-14 82.8 318 29.6
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 2.0e-13 80.9 311 28.6
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 2.0e-13 80.9 322 31.1
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 2.6e-13 80.5 247 30.0
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 3.4e-13 80.1 132 41.7
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 4.4e-13 79.7 316 28.8
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 7.6e-13 79.0 318 26.1
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 2.2e-12 77.4 311 31.5
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 4.9e-12 76.3 294 32.3
Carub.0003s3295 Capsella rubella HOM05D004960 ORTHO05D004696 6.4e-12 75.9 252 31.7
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 6.4e-12 75.9 304 29.9
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 6.4e-12 75.9 305 30.2
Nn1g04315 Nelumbo nucifera HOM05D004960 ORTHO05D004696 8.4e-12 75.5 242 28.9
BolC4t25405H Brassica oleracea HOM05D004960 ORTHO05D004696 1.4e-11 74.7 147 33.3
BcaC06g36453 Brassica carinata HOM05D004960 ORTHO05D004696 4.1e-11 73.2 225 32.0
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 9.2e-11 72.0 285 30.5
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 9.2e-11 72.0 291 30.2
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 1.2e-10 71.6 299 30.1
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.2e-10 71.6 311 28.6
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 2.1e-10 70.9 299 30.1
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 2.7e-10 70.5 320 30.3
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 2.7e-10 70.5 217 32.3
Migut.J01427 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.3e-09 68.2 320 33.4
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.3e-09 68.2 292 31.5
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 3.0e-09 67.0 299 29.8
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 8.6e-09 65.5 305 31.5
Aqoxy7G03206 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.1e-08 65.1 266 28.9
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.1e-08 65.1 315 29.5
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.5e-08 64.7 294 24.8
Duzib264G0268 Durio zibethinus HOM05D001062 ORTHO05D000884 4.3e-08 63.2 313 26.8
HanXRQChr06g0167601 Helianthus annuus HOM05D012567 ORTHO05D004696 4.3e-08 63.2 296 25.0
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 7.3e-08 62.4 305 29.5
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 9.6e-08 62.0 223 27.8
Lsat_1_v5_gn_7_52800 Lactuca sativa HOM05D004960 ORTHO05D004696 1.6e-07 61.2 203 29.6
MBI14_g30691_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.6e-07 61.2 321 29.6
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.8e-07 60.5 306 29.4
Lj4P839T38 Lonicera japonica HOM05D001062 ORTHO05D000884 8.1e-07 58.9 246 32.5
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 1.4e-06 58.2 243 28.0
TWI75G0353 Tripterygium wilfordii HOM05D001062 ORTHO05D000884 1.4e-06 58.2 258 27.5
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 3.1e-06 57.0 294 27.6
RcHm_v2.0_Chr4g0404701 Rosa chinensis HOM05D004960 ORTHO05D004696 4.0e-06 56.6 124 32.3
Gohir.D04G031300 Gossypium hirsutum HOM05D001062 ORTHO05D000884 5.2e-06 56.2 316 25.9
Gorai.012G035400 Gossypium raimondii HOM05D001062 ORTHO05D000884 5.2e-06 56.2 316 25.9
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 5.2e-06 56.2 305 29.2
SalBow6G1594 Salvia bowleyana HOM05D004960 ORTHO05D004696 6.8e-06 55.8 242 29.3
TWI79G0661 Tripterygium wilfordii HOM05D001062 ORTHO05D000884 8.9e-06 55.5 218 27.5


User provided reference genes

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