Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 2.7e-230 801.6 396 100.0
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.4e-178 629.8 442 70.8
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 2.3e-176 622.5 442 71.3
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 1.9e-175 619.4 441 70.1
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 1.9e-175 619.4 445 69.0
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 4.3e-175 618.2 445 68.3
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 7.3e-175 617.5 445 68.8
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.6e-174 616.3 442 68.3
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 1.6e-174 616.3 445 69.7
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 2.8e-174 615.5 441 68.3
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 4.7e-174 614.8 474 66.0
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 1.4e-173 613.2 442 68.3
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 2.4e-173 612.5 445 68.8
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 2.4e-173 612.5 443 68.4
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 1.5e-172 609.8 441 67.8
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 2.0e-172 609.4 445 68.8
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 1.7e-171 606.3 442 67.6
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 2.2e-171 605.9 437 68.4
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 2.9e-171 605.5 442 67.4
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 2.9e-171 605.5 454 66.7
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 3.8e-171 605.1 440 68.9
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 1.4e-170 603.2 443 67.7
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 1.9e-170 602.8 446 65.5
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 1.9e-170 602.8 441 67.3
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 2.4e-170 602.4 445 65.6
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 2.4e-170 602.4 445 67.2
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 2.4e-170 602.4 445 66.7
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 5.4e-170 601.3 445 67.0
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 1.2e-169 600.1 441 66.9
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 2.1e-169 599.4 449 67.0
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 2.7e-169 599.0 445 66.7
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 2.7e-169 599.0 446 67.0
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 4.6e-169 598.2 445 66.5
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 6.0e-169 597.8 445 65.2
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 7.8e-169 597.4 443 68.8
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.7e-168 596.3 439 67.4
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 3.0e-168 595.5 439 69.0
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 5.1e-168 594.7 441 65.8
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.5e-167 593.2 445 65.8
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.3e-167 592.0 445 65.6
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 5.6e-167 591.3 448 66.7
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.6e-166 589.7 440 66.4
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 1.6e-166 589.7 442 65.8
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 8.1e-166 587.4 442 65.6
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 8.1e-166 587.4 434 66.6
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 3.1e-165 585.5 434 68.7
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 6.9e-165 584.3 443 66.6
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 1.2e-164 583.6 441 64.9
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 1.5e-164 583.2 423 68.6
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 2.2e-163 579.3 466 62.4
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 1.6e-161 573.2 446 64.3
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 6.0e-161 571.2 441 65.5
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 2.3e-160 569.3 441 64.6
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 8.7e-160 567.4 425 67.1
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 9.6e-159 563.9 429 66.7
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.6e-158 563.1 469 63.1
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.1e-158 562.8 432 65.5
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 1.1e-157 560.5 451 63.0
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 1.8e-157 559.7 439 63.8
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 2.4e-157 559.3 440 64.3
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 2.2e-155 552.7 405 67.2
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 3.8e-155 552.0 439 62.6
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 8.4e-155 550.8 418 67.2
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 9.3e-154 547.4 447 61.3
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 1.0e-152 543.9 428 63.1
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 6.7e-152 541.2 439 60.8
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 2.5e-151 539.3 447 61.5
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 3.3e-151 538.9 442 61.5
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.3e-150 537.0 440 59.5
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.1e-146 523.9 454 61.0
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 1.4e-146 523.5 431 62.6
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 1.2e-145 520.4 392 66.6
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 2.3e-144 516.2 416 64.4
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 2.8e-142 509.2 411 62.3
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 1.5e-140 503.4 435 58.6
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 3.4e-140 502.3 397 65.2
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 2.9e-139 499.2 433 60.5
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 6.5e-139 498.0 392 62.0
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 3.3e-135 485.7 361 64.5
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.2e-134 483.0 345 67.5
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 1.8e-133 479.9 388 64.2
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 4.5e-132 475.3 387 62.0
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 5.9e-132 474.9 387 61.8
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.4e-130 470.3 395 61.3
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 1.4e-128 463.8 383 60.1
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 2.3e-128 463.0 414 56.5
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 5.1e-128 461.8 477 53.5
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 2.0e-127 459.9 654 42.0
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 5.9e-124 448.4 326 68.1
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 1.0e-123 447.6 350 64.0
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 2.2e-123 446.4 392 59.9
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 6.5e-123 444.9 427 57.6
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 2.0e-116 423.3 308 68.2
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 5.9e-116 421.8 380 58.2
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 1.0e-112 411.0 424 49.3
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.5e-111 407.1 443 49.2
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 4.8e-110 402.1 396 53.5
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 2.7e-105 386.3 373 57.1
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 8.0e-105 384.8 397 53.4
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 3.0e-104 382.9 457 49.0
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 3.7e-102 375.9 389 52.4
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 2.9e-99 366.3 243 73.7
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 5.0e-99 365.5 238 75.2
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 7.2e-98 361.7 358 54.7
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 2.8e-97 359.8 243 72.8
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 6.3e-94 348.6 243 69.5
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 8.3e-94 348.2 363 48.5
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 2.0e-92 343.6 241 71.0
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 5.0e-91 339.0 428 46.3
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 2.7e-84 316.6 269 61.0
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 1.2e-81 307.8 448 37.7
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 6.2e-73 278.9 246 58.1
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.2e-65 254.6 171 72.5
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 1.1e-64 251.5 171 73.1
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 6.8e-64 248.8 152 74.3
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 8.4e-62 241.9 153 74.5
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 8.4e-62 241.9 153 74.5
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.6e-60 237.7 153 73.2
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 2.5e-58 230.3 341 39.3
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 5.8e-55 219.2 133 76.7
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 4.9e-54 216.1 124 78.2
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 9.3e-53 211.8 174 59.8
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 6.6e-51 205.7 130 72.3
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 1.3e-49 201.4 127 74.0
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.2e-47 194.9 127 69.3
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 2.9e-46 190.3 131 71.8
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 3.8e-46 189.9 125 65.6
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.1e-34 151.8 107 70.1
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 1.1e-34 151.8 96 69.8
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 1.3e-33 148.3 105 69.5
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 4.0e-32 143.3 155 51.6
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 5.3e-32 142.9 84 79.8
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 8.4e-30 135.6 81 79.0
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 6.1e-28 129.4 107 57.9
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 1.0e-19 102.1 281 28.5
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.3e-17 95.1 69 72.5
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 6.3e-17 92.8 67 70.1
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 2.4e-16 90.9 63 68.3
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 6.9e-16 89.4 63 71.4
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.2e-15 88.6 45 86.7
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 7.9e-12 75.9 37 83.8
Eucgr.L00581 Eucalyptus grandis HOM05D005203 ORTHO05D192196 1.0e-06 58.9 80 45.0


User provided reference genes

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