Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 1.6e-143 512.7 255 100.0
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 4.5e-24 115.9 149 49.7
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 2.5e-19 100.1 202 38.1
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 3.3e-19 99.8 207 38.2
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 5.6e-19 99.0 205 38.0
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 9.6e-19 98.2 228 34.6
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 3.7e-18 96.3 123 51.2
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 5.3e-17 92.4 202 34.7
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 6.9e-17 92.0 82 58.5
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 6.9e-17 92.0 69 69.6
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.2e-16 91.3 61 73.8
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 2.6e-16 90.1 176 42.0
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 2.6e-16 90.1 131 45.0
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 4.5e-16 89.4 125 48.0
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 4.5e-16 89.4 169 40.2
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 5.8e-16 89.0 153 45.1
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 7.6e-16 88.6 227 36.1
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 1.0e-15 88.2 49 85.7
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 1.3e-15 87.8 52 76.9
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 1.3e-15 87.8 45 88.9
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 1.7e-15 87.4 50 82.0
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 1.7e-15 87.4 155 43.2
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 1.7e-15 87.4 123 50.4
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 2.2e-15 87.0 187 34.8
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 2.2e-15 87.0 213 33.3
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 2.9e-15 86.7 47 83.0
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 2.9e-15 86.7 92 55.4
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 2.9e-15 86.7 45 86.7
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.9e-15 86.7 60 66.7
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.9e-15 86.7 60 66.7
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 4.9e-15 85.9 110 50.0
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 4.9e-15 85.9 49 83.7
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 6.5e-15 85.5 234 34.2
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 6.5e-15 85.5 85 52.9
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 8.4e-15 85.1 50 78.0
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 8.4e-15 85.1 66 66.7
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 1.1e-14 84.7 150 42.0
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 1.4e-14 84.3 205 33.7
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 1.9e-14 84.0 212 36.8
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 1.9e-14 84.0 75 60.0
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 1.9e-14 84.0 176 35.8
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 1.9e-14 84.0 91 50.5
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 1.9e-14 84.0 172 39.0
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 2.5e-14 83.6 49 79.6
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.5e-14 83.6 60 66.7
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.5e-14 83.6 60 66.7
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.2e-14 83.2 60 66.7
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 5.5e-14 82.4 61 70.5
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 5.5e-14 82.4 49 77.6
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 5.5e-14 82.4 75 57.3
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 5.5e-14 82.4 48 77.1
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 7.1e-14 82.0 60 65.0
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 7.1e-14 82.0 60 66.7
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 9.3e-14 81.6 108 44.4
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 9.3e-14 81.6 224 33.5
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 9.3e-14 81.6 60 66.7
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 9.3e-14 81.6 206 36.9
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 1.2e-13 81.3 67 65.7
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 1.2e-13 81.3 171 40.9
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 2.1e-13 80.5 214 36.4
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 2.1e-13 80.5 58 63.8
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 2.1e-13 80.5 49 75.5
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 2.7e-13 80.1 220 34.5
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.5e-13 79.7 62 62.9
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 7.9e-13 78.6 92 51.1
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 7.9e-13 78.6 80 51.2
Cpa.g.sc2.80 Carica papaya HOM05D008870 ORTHO05D010906 1.0e-12 78.2 71 53.5
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 1.0e-12 78.2 107 45.8
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 1.0e-12 78.2 165 38.2
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 1.0e-12 78.2 58 62.1
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 1.0e-12 78.2 58 62.1
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 1.3e-12 77.8 49 73.5
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 1.8e-12 77.4 214 34.6
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 1.8e-12 77.4 214 34.6
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 1.8e-12 77.4 49 73.5
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 2.3e-12 77.0 247 30.8
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 3.0e-12 76.6 167 38.9
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 3.0e-12 76.6 116 44.8
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 3.9e-12 76.3 70 55.7
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 3.9e-12 76.3 49 73.5
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 5.1e-12 75.9 99 45.5
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 6.7e-12 75.5 200 35.5
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 1.1e-11 74.7 205 34.6
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 1.1e-11 74.7 175 37.7
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 1.1e-11 74.7 205 34.1
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 1.1e-11 74.7 160 36.2
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.5e-11 74.3 44 77.3
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 1.5e-11 74.3 209 35.4
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 1.9e-11 73.9 162 37.0
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 2.5e-11 73.6 60 56.7
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 2.5e-11 73.6 118 42.4
Cpa.g.sc24.62 Carica papaya HOM05D008870 ORTHO05D010906 3.3e-11 73.2 71 52.1
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 5.7e-11 72.4 222 32.9
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 9.6e-11 71.6 128 39.1
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 9.6e-11 71.6 206 33.5
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 9.6e-11 71.6 206 33.5
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 9.6e-11 71.6 210 32.4
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 2.8e-10 70.1 166 36.7
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 3.7e-10 69.7 206 33.5
Cpa.g.sc56.5 Carica papaya HOM05D008870 ORTHO05D010906 8.2e-10 68.6 65 55.4
Cpa.g.sc8.320 Carica papaya HOM05D008870 ORTHO05D010906 1.1e-09 68.2 68 47.1
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 1.4e-09 67.8 66 51.5
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 1.4e-09 67.8 52 59.6
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 1.4e-09 67.8 52 59.6
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 1.8e-09 67.4 66 51.5
Cpa.g.sc12.244 Carica papaya HOM05D008870 ORTHO05D010906 3.1e-09 66.6 91 42.9
Cpa.g.sc79.23 Carica papaya HOM05D008870 ORTHO05D010906 4.1e-09 66.2 99 36.4
Cpa.g.sc448.2 Carica papaya HOM05D008870 ORTHO05D010906 5.3e-09 65.9 69 47.8
Cpa.g.sc71.9 Carica papaya HOM05D008870 ORTHO05D010906 6.9e-09 65.5 70 50.0
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 9.0e-09 65.1 49 63.3
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 1.2e-08 64.7 45 71.1
Cpa.g.sc23.138 Carica papaya HOM05D000004 ORTHO05D000002 1.5e-08 64.3 69 44.9
Cpa.g.sc9.320 Carica papaya HOM05D008870 ORTHO05D010906 1.5e-08 64.3 73 39.7
Cpa.g.sc9.44 Carica papaya HOM05D008870 ORTHO05D010906 2.0e-08 63.9 71 46.5
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 2.0e-08 63.9 176 35.8
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 5.8e-08 62.4 100 40.0
Cpa.g.sc43.23 Carica papaya HOM05D008870 ORTHO05D010906 7.6e-08 62.0 70 45.7
Cpa.g.sc40.12 Carica papaya HOM05D004670 ORTHO05D022223 1.0e-07 61.6 57 54.4
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 1.3e-07 61.2 272 28.7
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 1.3e-07 61.2 214 31.3
Cpa.g.sc519.7 Carica papaya HOM05D008870 ORTHO05D010906 1.7e-07 60.8 81 42.0
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 1.7e-07 60.8 217 29.0
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 2.9e-07 60.1 87 43.7
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 1.1e-06 58.2 58 48.3
Cpa.g.sc65.114 Carica papaya HOM05D008870 ORTHO05D010906 1.4e-06 57.8 69 43.5
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 1.9e-06 57.4 137 32.8
Migut.B01064 Erythranthe guttata HOM05D006327 ORTHO05D007952 3.2e-06 56.6 68 52.9
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 4.2e-06 56.2 58 46.6
Cpa.g.sc50.21 Carica papaya HOM05D008870 ORTHO05D010906 4.2e-06 56.2 68 39.7
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 5.5e-06 55.8 89 41.6
Manes.08G059801 Manihot esculenta HOM05D000004 ORTHO05D000002 5.5e-06 55.8 70 38.6
Cpa.g.sc126.9 Carica papaya HOM05D008870 ORTHO05D010906 9.3e-06 55.1 71 39.4


User provided reference genes

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