Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 1.3e-113 412.9 195 100.0
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 2.7e-77 292.4 192 71.9
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 7.7e-77 290.8 183 73.8
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 2.9e-76 288.9 181 75.1
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 5.0e-76 288.1 189 71.4
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 5.0e-76 288.1 197 71.1
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 5.0e-76 288.1 198 70.2
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 8.6e-76 287.3 199 70.9
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 7.2e-75 284.3 192 71.9
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 9.5e-75 283.9 175 74.3
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 9.5e-75 283.9 199 68.3
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.2e-74 283.5 195 70.3
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 2.1e-74 282.7 195 70.8
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 3.6e-74 282.0 193 69.4
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 6.1e-74 281.2 196 67.9
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 6.1e-74 281.2 196 67.9
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 1.0e-73 280.4 201 68.7
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 6.8e-73 277.7 163 78.5
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 2.6e-72 275.8 163 75.5
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 3.4e-72 275.4 201 67.2
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 4.4e-72 275.0 192 72.4
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 7.5e-72 274.2 193 70.5
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 9.8e-72 273.9 177 74.0
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 1.7e-71 273.1 200 69.5
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 1.7e-71 273.1 163 76.1
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 3.7e-71 271.9 163 76.1
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 8.3e-71 270.8 199 66.8
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 1.1e-70 270.4 197 66.0
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 1.1e-70 270.4 198 66.7
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 1.4e-70 270.0 197 66.5
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 1.4e-70 270.0 196 67.9
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 2.4e-70 269.2 201 63.7
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 3.1e-70 268.9 203 65.5
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 4.1e-70 268.5 146 84.2
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 4.1e-70 268.5 196 67.3
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 4.1e-70 268.5 181 70.2
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 1.2e-69 266.9 189 68.3
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 1.6e-69 266.5 197 66.5
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 1.6e-69 266.5 197 66.5
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 2.0e-69 266.2 190 67.9
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 2.0e-69 266.2 191 70.2
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 2.0e-69 266.2 198 66.2
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 2.7e-69 265.8 196 65.8
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 2.7e-69 265.8 193 67.9
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 2.7e-69 265.8 193 68.4
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 3.5e-69 265.4 191 65.4
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 5.9e-69 264.6 147 83.0
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 7.8e-69 264.2 160 75.6
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.0e-68 263.8 186 69.4
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 2.3e-68 262.7 200 64.5
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 3.8e-68 261.9 196 63.8
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 5.0e-68 261.5 212 59.9
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 6.6e-68 261.2 195 66.2
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 8.6e-68 260.8 149 79.9
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 1.1e-67 260.4 195 66.2
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.5e-67 260.0 195 66.7
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 1.9e-67 259.6 147 78.9
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 2.5e-67 259.2 197 64.0
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 2.5e-67 259.2 193 67.9
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 2.5e-67 259.2 192 66.1
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 3.3e-67 258.8 198 64.6
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 7.3e-67 257.7 195 65.1
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 7.3e-67 257.7 191 68.1
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 4.7e-66 255.0 177 65.5
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 1.4e-65 253.4 144 76.4
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 4.0e-65 251.9 169 69.8
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 5.2e-65 251.5 160 73.8
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 6.8e-65 251.1 145 80.7
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 2.0e-64 249.6 146 76.7
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 2.0e-64 249.6 146 77.4
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 2.6e-64 249.2 196 61.7
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 3.4e-64 248.8 177 65.5
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 7.5e-64 247.7 191 66.0
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 9.8e-64 247.3 142 79.6
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 9.8e-64 247.3 169 69.8
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 9.8e-64 247.3 169 69.8
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 9.8e-64 247.3 191 64.9
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 1.7e-63 246.5 198 63.1
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 3.7e-63 245.4 199 64.3
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 6.4e-63 244.6 203 59.1
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 6.4e-63 244.6 190 63.7
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 8.3e-63 244.2 190 64.2
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 9.2e-62 240.7 162 66.0
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 1.2e-61 240.4 198 59.1
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.9e-59 233.0 179 63.7
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 1.4e-57 226.9 125 84.0
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 4.0e-57 225.3 158 66.5
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 1.5e-56 223.4 188 61.7
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 4.4e-56 221.9 124 80.6
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 4.4e-56 221.9 124 79.0
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 2.2e-55 219.5 180 63.3
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 8.3e-55 217.6 140 73.6
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 1.9e-54 216.5 119 86.6
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 2.4e-54 216.1 158 63.9
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 1.2e-53 213.8 115 87.8
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 1.0e-52 210.7 163 65.0
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.7e-52 209.9 160 64.4
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.7e-52 209.9 160 64.4
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 1.5e-51 206.8 158 65.8
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 1.9e-51 206.5 197 54.8
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 5.6e-51 204.9 124 75.0
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 7.3e-51 204.5 140 62.9
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 6.2e-50 201.4 147 66.0
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 3.1e-49 199.1 161 60.9
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 2.9e-47 192.6 143 56.6
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 4.1e-46 188.7 139 61.9
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 9.2e-46 187.6 163 57.1
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.7e-45 186.0 101 83.2
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 2.7e-45 186.0 99 84.8
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 4.6e-45 185.3 153 58.8
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 2.3e-44 183.0 140 60.0
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 6.6e-44 181.4 139 61.2
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 1.9e-43 179.9 180 52.2
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 4.3e-43 178.7 118 68.6
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 9.5e-43 177.6 102 80.4
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 3.1e-41 172.6 121 67.8
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.1e-41 172.6 121 67.8
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 2.6e-40 169.5 133 57.1
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 7.6e-40 167.9 108 65.7
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 2.2e-39 166.4 110 65.5
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 6.6e-36 154.8 196 43.9
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 2.5e-35 152.9 118 55.9
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 4.3e-35 152.1 127 58.3
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 1.7e-28 130.2 68 88.2
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 1.9e-27 126.7 123 55.3
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 4.3e-27 125.6 124 44.4
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 5.6e-27 125.2 123 54.5
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 9.6e-27 124.4 117 53.0
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 9.6e-27 124.4 75 72.0
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 1.3e-26 124.0 123 54.5
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 1.1e-25 120.9 75 70.7
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 7.6e-24 114.8 88 62.5
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 2.7e-21 106.3 63 71.4
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 4.6e-21 105.5 85 63.5
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 1.0e-20 104.4 59 79.7
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 2.3e-20 103.2 90 51.1
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 3.0e-20 102.8 67 71.6
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 3.9e-20 102.4 56 83.9
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 5.6e-19 98.6 63 65.1
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 6.2e-18 95.1 74 63.5
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 1.7e-15 87.0 80 48.8
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 2.5e-11 73.2 65 53.8
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 2.4e-09 66.6 33 87.9
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 3.4e-08 62.8 96 38.5


User provided reference genes

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