Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 1.0e-160 570.1 301 100.0
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 2.8e-110 402.5 302 73.5
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 2.6e-108 396.0 297 71.7
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 2.6e-108 396.0 297 71.7
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.9e-106 389.8 297 71.4
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 3.0e-104 382.5 301 68.8
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 4.4e-103 378.6 292 68.8
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 6.3e-102 374.8 305 69.5
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 5.9e-100 368.2 305 68.9
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.3e-99 367.1 313 63.9
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 2.2e-99 366.3 275 70.2
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.9e-98 363.2 300 66.7
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 4.7e-97 358.6 303 66.0
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 3.1e-93 345.9 304 65.8
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 3.1e-93 345.9 302 67.2
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 3.1e-93 345.9 302 67.2
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 1.0e-91 340.9 304 66.8
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 2.9e-91 339.3 306 64.1
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 6.5e-91 338.2 306 65.4
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 1.9e-90 336.7 284 68.3
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 1.9e-90 336.7 304 65.5
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.2e-89 334.0 303 67.7
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 2.1e-89 333.2 298 62.8
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 2.7e-89 332.8 306 65.4
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 6.1e-89 331.6 302 63.6
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 2.3e-88 329.7 300 63.7
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 4.0e-88 328.9 283 64.0
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 4.0e-88 328.9 320 59.4
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 3.3e-87 325.9 294 62.6
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 5.7e-87 325.1 298 64.4
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 2.2e-86 323.2 304 64.1
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 2.2e-86 323.2 306 65.0
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 4.8e-86 322.0 280 63.9
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 6.3e-86 321.6 299 61.9
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 8.2e-86 321.2 313 64.9
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.8e-85 320.1 302 62.6
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 2.7e-84 316.2 280 65.0
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.7e-84 316.2 309 61.2
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 4.5e-84 315.5 298 60.7
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 1.0e-83 314.3 303 63.7
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 1.7e-83 313.5 308 61.0
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 3.8e-83 312.4 304 60.9
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 5.0e-83 312.0 304 61.8
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 5.0e-83 312.0 303 60.4
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 6.5e-83 311.6 303 60.4
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 8.5e-83 311.2 303 61.1
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 3.2e-82 309.3 304 61.8
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 4.2e-82 308.9 302 60.3
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 5.5e-82 308.5 262 64.5
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 5.5e-82 308.5 302 59.9
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 5.5e-82 308.5 308 60.4
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 7.2e-82 308.1 301 59.1
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 2.1e-81 306.6 304 61.8
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 6.1e-81 305.1 311 59.8
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 1.4e-80 303.9 303 61.4
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 1.4e-80 303.9 303 60.1
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.4e-80 303.9 306 63.1
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 4.0e-80 302.4 286 59.8
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 4.0e-80 302.4 302 58.6
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 5.2e-80 302.0 408 51.0
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 8.8e-80 301.2 294 59.5
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 2.0e-79 300.1 306 59.2
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 2.6e-79 299.7 308 58.8
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 3.4e-79 299.3 270 60.4
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 4.4e-79 298.9 300 58.7
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 4.4e-79 298.9 289 58.5
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 5.7e-79 298.5 281 65.1
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 1.3e-78 297.4 303 59.7
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 4.8e-78 295.4 281 62.3
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 6.3e-78 295.0 304 62.2
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 6.3e-78 295.0 304 62.2
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 6.3e-78 295.0 298 58.4
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 5.4e-77 292.0 310 59.4
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.2e-76 290.8 305 58.0
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 7.7e-76 288.1 305 59.7
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 7.7e-76 288.1 293 59.4
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 7.7e-76 288.1 307 59.6
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 2.3e-75 286.6 277 61.4
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 3.3e-74 282.7 303 57.4
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 3.3e-74 282.7 277 62.5
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 5.5e-74 282.0 283 61.1
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 9.5e-74 281.2 279 61.3
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 1.6e-73 280.4 307 59.0
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 2.8e-73 279.6 303 59.1
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 6.1e-73 278.5 309 58.3
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 8.0e-73 278.1 264 61.7
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 1.0e-72 277.7 307 55.7
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 2.3e-72 276.6 285 60.7
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 6.8e-72 275.0 312 56.1
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 5.7e-71 271.9 303 58.1
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 5.7e-71 271.9 310 56.5
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 1.4e-69 267.3 252 58.7
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 7.0e-69 265.0 282 56.7
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 6.6e-67 258.5 304 56.9
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 3.3e-66 256.1 306 56.9
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 7.3e-66 255.0 300 55.0
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 1.4e-64 250.8 268 61.2
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 1.8e-64 250.4 302 54.6
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 2.3e-64 250.0 276 53.3
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 5.2e-64 248.8 304 55.6
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 2.0e-63 246.9 314 56.4
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 1.7e-62 243.8 302 56.0
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 2.2e-62 243.4 298 52.3
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 8.3e-62 241.5 301 55.1
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 1.4e-61 240.7 275 54.9
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 9.2e-61 238.0 306 49.3
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 1.6e-60 237.3 200 72.0
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.6e-60 237.3 301 52.5
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 3.5e-60 236.1 260 58.8
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 4.6e-60 235.7 312 54.8
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.7e-59 233.8 307 56.0
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 1.9e-58 230.3 243 59.3
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 2.1e-57 226.9 304 51.6
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 4.7e-57 225.7 307 54.1
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 1.4e-56 224.2 307 52.8
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 3.1e-56 223.0 310 46.5
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 7.3e-50 201.8 308 45.1
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 4.1e-45 186.0 244 51.2
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 3.0e-43 179.9 158 67.1
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 3.0e-43 179.9 266 47.0
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 1.2e-41 174.5 249 47.4
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 3.6e-41 172.9 307 44.6
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 8.1e-41 171.8 234 44.9
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 1.8e-40 170.6 171 59.1
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 5.2e-40 169.1 256 46.1
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 6.8e-40 168.7 171 57.3
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 2.0e-39 167.2 307 36.8
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 1.6e-36 157.5 271 38.4
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 7.8e-36 155.2 282 36.9
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 8.1e-33 145.2 232 49.1
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 4.0e-32 142.9 265 41.1
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 9.0e-32 141.7 285 36.5
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 2.4e-29 133.7 273 38.5
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 3.0e-27 126.7 97 72.2
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 1.7e-22 110.9 172 45.3
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 1.4e-21 107.8 84 60.7
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.4e-16 91.3 91 51.6
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 2.9e-14 83.6 101 48.5
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 3.8e-14 83.2 118 44.1
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 1.2e-12 78.2 73 63.0
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 1.6e-12 77.8 56 67.9
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 1.0e-11 75.1 61 60.7
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 2.3e-11 73.9 77 50.6
MBI13_g34035_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.4e-08 64.7 82 46.3
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.8e-08 64.3 122 33.6


User provided reference genes

Program Settings