Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c27575.2 Carica papaya HOM05D006777 ORTHO05D008360 8.9e-47 189.9 93 100.0
Aa31LG9G3900 Aethionema arabicum HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
AL7G42240 Arabidopsis lyrata HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
AT4G14147 Arabidopsis thaliana HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
BcaC02g09355 Brassica carinata HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
A04p08010 Brassica napus HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
C04p41680 Brassica napus HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
BolC4t25746H Brassica oleracea HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
BraA04t16489Z Brassica rapa HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
CSS0000801 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
Carub.0007s2827 Capsella rubella HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
CARHR220180 Cardamine hirsuta HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
CiPaw.02G065600 Carya illinoinensis HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
DCAR_026626 Daucus carota HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
Duzib268G0333 Durio zibethinus HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
Glyma.05G153800 Glycine max HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
Glyma.08G111500 Glycine max HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
Gohir.A02G020900 Gossypium hirsutum HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
Gohir.D02G024900 Gossypium hirsutum HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
Gorai.005G030800 Gossypium raimondii HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
Lj4g0000567 Lotus japonicus HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
Medtr8g085290 Medicago truncatula HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
RcHm_v2.0_Chr4g0414361 Rosa chinensis HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
RcHm_v2.0_Chr7g0213901 Rosa chinensis HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
Sc25g0003260 Simmondsia chinensis HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
THA.LOC104808706 Tarenaya hassleriana HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
Thecc.04G200300 Theobroma cacao HOM05D006777 ORTHO05D008360 5.6e-25 117.5 60 95.0
Actinidia23410 Actinidia chinensis HOM05D006777 ORTHO05D008360 7.3e-25 117.1 57 98.2
Lalb_Chr07g0186741 Lupinus albus HOM05D006777 ORTHO05D008360 7.3e-25 117.1 57 98.2
Manes.03G146100 Manihot esculenta HOM05D006777 ORTHO05D008360 7.3e-25 117.1 60 93.3
TWI53G1099 Tripterygium wilfordii HOM05D006777 ORTHO05D008360 7.3e-25 117.1 57 98.2
Aqoxy5G00004 Aquilegia oxysepala HOM05D006777 ORTHO05D008360 9.5e-25 116.7 60 93.3
MSTRG.4231 Avicennia marina HOM05D006777 ORTHO05D008360 9.5e-25 116.7 60 93.3
EL10Ac3g05505 Beta vulgaris HOM05D006777 ORTHO05D008360 9.5e-25 116.7 60 93.3
TAR362G0671 Trochodendron aralioides HOM05D006777 ORTHO05D008360 9.5e-25 116.7 60 93.3
SalBow8G2353 Salvia bowleyana HOM05D006777 ORTHO05D008360 1.2e-24 116.3 60 93.3
SalBow8G2632 Salvia bowleyana HOM05D006777 ORTHO05D008360 1.2e-24 116.3 60 93.3
THA.LOC104804809 Tarenaya hassleriana HOM05D006777 ORTHO05D008360 1.2e-24 116.3 60 93.3
GSVIVG01020914001 Vitis vinifera HOM05D006777 ORTHO05D008360 1.2e-24 116.3 60 93.3
arahy.Tifrunner.gnm1.ann1.GXV5N1 Arachis hypogaea HOM05D006777 ORTHO05D008360 1.6e-24 115.9 60 93.3
arahy.Tifrunner.gnm1.ann1.QE6BNJ Arachis hypogaea HOM05D006777 ORTHO05D008360 1.6e-24 115.9 60 93.3
BcaB02g08630 Brassica carinata HOM05D006777 ORTHO05D008360 1.6e-24 115.9 60 93.3
AUR62016205 Chenopodium quinoa HOM05D006777 ORTHO05D008360 1.6e-24 115.9 60 91.7
AUR62039283 Chenopodium quinoa HOM05D006777 ORTHO05D008360 1.6e-24 115.9 60 91.7
Ciclev10006063m.g Citrus clementina HOM05D006777 ORTHO05D008360 1.6e-24 115.9 60 91.7
Os03g0848300 Oryza sativa ssp. japonica HOM05D006777 ORTHO05D008360 1.6e-24 115.9 60 91.7
Zm00001eb210820 Zea mays HOM05D006777 ORTHO05D008360 1.6e-24 115.9 60 91.7
Migut.G00716 Erythranthe guttata HOM05D006777 ORTHO05D008360 2.1e-24 115.5 60 91.7
unitig_37.g12031 Utricularia gibba HOM05D006777 ORTHO05D008360 2.1e-24 115.5 57 96.5
Actinidia35856 Actinidia chinensis HOM05D006777 ORTHO05D008360 2.8e-24 115.2 57 94.7
Mapoly0060s0011 Marchantia polymorpha HOM05D006777 ORTHO05D008360 2.8e-24 115.2 60 91.7
Sopen12g033210 Solanum pennellii HOM05D006777 ORTHO05D008360 2.8e-24 115.2 57 96.5
Eucgr.H02768 Eucalyptus grandis HOM05D006777 ORTHO05D008360 3.6e-24 114.8 60 91.7
Thhalv10026384m.g Eutrema salsugineum HOM05D006777 ORTHO05D008360 3.6e-24 114.8 60 93.3
Sp7g12000 Schrenkiella parvula HOM05D006777 ORTHO05D008360 3.6e-24 114.8 60 93.3
Solyc12g098430.2 Solanum lycopersicum HOM05D006777 ORTHO05D008360 3.6e-24 114.8 57 94.7
TPR.G11902 Trifolium pratense HOM05D006777 ORTHO05D008360 3.6e-24 114.8 60 91.7
CANSAT78G1417 Cannabis sativa HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 93.3
CDE06G2004 Ceratophyllum demersum HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 91.7
Dinv27219 Davidia involucrata HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 93.3
Dinv38213 Davidia involucrata HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 93.3
FvH4_4g13710 Fragaria vesca HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 93.3
FAN12G2838 Fragaria x ananassa HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 93.3
FAN17G1701 Fragaria x ananassa HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 93.3
FAN22G2344 Fragaria x ananassa HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 93.3
Hma1.2p1_0187F.1_g082380 Hydrangea macrophylla HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 93.3
Hma1.2p1_0187F.1_g082390 Hydrangea macrophylla HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 93.3
MD04G1012700 Malus domestica HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 93.3
Nn1g07943 Nelumbo nucifera HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 90.0
PSO017G6923 Papaver somniferum HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 91.7
PSO063G4325 Papaver somniferum HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 91.7
Psat7g074160 Pisum sativum HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 93.3
Prupe.1G158800 Prunus persica HOM05D006777 ORTHO05D008360 4.7e-24 114.4 60 93.3
AagrBONN_evm.TU.Sc2ySwM_228.5073 Anthoceros agrestis HOM05D006777 ORTHO05D008360 6.2e-24 114.0 60 90.0
HPP92_006972 Vanilla planifolia HOM05D006777 ORTHO05D008360 8.1e-24 113.6 60 90.0
PGR083G1334 Punica granatum HOM05D006777 ORTHO05D008360 1.1e-23 113.2 60 90.0
Sed0006533 Sechium edule HOM05D006777 ORTHO05D008360 1.4e-23 112.8 57 94.7
Hund11971 Selenicereus undatus HOM05D006777 ORTHO05D008360 1.4e-23 112.8 57 93.0
ClCG06G008050 Citrullus lanatus HOM05D006777 ORTHO05D008360 1.8e-23 112.5 57 93.0
MELO3C019533.2 Cucumis melo HOM05D006777 ORTHO05D008360 1.8e-23 112.5 57 93.0
MELO3C020359.2 Cucumis melo HOM05D006777 ORTHO05D008360 1.8e-23 112.5 57 93.0
CsaV3_2G011130 Cucumis sativus L. HOM05D006777 ORTHO05D008360 1.8e-23 112.5 57 93.0
HanXRQChr01g0022451 Helianthus annuus HOM05D006777 ORTHO05D008360 1.8e-23 112.5 60 90.0
Sed0015167 Sechium edule HOM05D006777 ORTHO05D008360 1.8e-23 112.5 57 93.0
Potri.017G057400 Populus trichocarpa HOM05D006777 ORTHO05D008360 2.3e-23 112.1 60 88.3
Atru.chr4.1633 Acer truncatum HOM05D006777 ORTHO05D008360 3.1e-23 111.7 60 91.7
ATR1147G041 Amborella trichopoda HOM05D006777 ORTHO05D008360 3.1e-23 111.7 60 88.3
Lsat_1_v5_gn_1_72060 Lactuca sativa HOM05D006777 ORTHO05D008360 3.1e-23 111.7 60 90.0
vmacro00459 Vaccinium macrocarpon HOM05D006777 ORTHO05D008360 3.1e-23 111.7 75 77.3
Lalb_Chr12g0205521 Lupinus albus HOM05D006777 ORTHO05D008360 4.0e-23 111.3 57 94.7
Nitab4.5_0000676g0120 Nicotiana tabacum HOM05D006777 ORTHO05D008360 1.5e-22 109.4 63 87.3
Duzib212G0541 Durio zibethinus HOM05D006777 ORTHO05D008360 3.4e-22 108.2 56 94.6
Pp3c3_19880 Physcomitrium patens HOM05D006777 ORTHO05D008360 7.6e-22 107.1 60 83.3
SMO146G0157 Selaginella moellendorffii HOM05D006777 ORTHO05D008360 2.2e-21 105.5 60 83.3
COL.COLO4_20174 Corchorus olitorius HOM05D001598 ORTHO05D002757 2.9e-21 105.1 56 92.9
FAN07G2803 Fragaria x ananassa HOM05D006777 ORTHO05D008360 3.7e-21 104.8 74 75.7
CsaV3_3G018320 Cucumis sativus L. HOM05D006777 ORTHO05D008360 8.4e-21 103.6 56 89.3
Sabra17G0050600 Salix brachista HOM05D006777 ORTHO05D008360 5.4e-20 100.9 56 87.5
CBR_g4477 Chara braunii HOM05D006777 ORTHO05D008360 2.1e-19 99.0 60 73.3
SGA_v2.0_scaffold14G07057 Striga asiatica HOM05D006777 ORTHO05D008360 8.1e-16 87.0 106 50.9
Haze_11625 Corylus avellana HOM05D006777 ORTHO05D008360 9.9e-14 80.1 95 53.7
Cre06.g260800 Chlamydomonas reinhardtii HOM05D006777 ORTHO05D008360 5.4e-12 74.3 67 53.7
Haze_27630 Corylus avellana HOM05D006777 ORTHO05D008360 7.1e-12 73.9 57 63.2
Nitab4.5_0000850g0170 Nicotiana tabacum HOM05D006777 ORTHO05D008360 2.1e-11 72.4 95 48.4
Peaxi162Scf00652g00116 Petunia axillaris HOM05D006777 ORTHO05D008360 2.1e-11 72.4 95 48.4
Cc03_g11170 Coffea canephora HOM05D006777 ORTHO05D008360 3.0e-10 68.6 32 96.9
PGSC0003DMG402004570 Solanum tuberosum HOM05D006777 ORTHO05D008360 5.1e-10 67.8 36 91.7
Hund03125 Selenicereus undatus HOM05D006777 ORTHO05D008360 3.3e-09 65.1 32 87.5
SHI07424 Sapria himalayana HOM05D006777 ORTHO05D008360 2.8e-08 62.0 39 79.5
Lj6A528G35 Lonicera japonica HOM05D006777 ORTHO05D008360 7.6e-06 53.9 34 82.4


User provided reference genes

Program Settings