Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c27575.1 Carica papaya HOM05D002342 ORTHO05D002407 1.4e-145 519.6 268 100.0
Dinv27218 Davidia involucrata HOM05D002342 ORTHO05D002407 2.5e-65 253.1 209 63.6
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 7.1e-65 251.5 207 62.3
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 9.3e-65 251.1 207 62.3
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 1.2e-64 250.8 212 59.9
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 6.0e-64 248.4 203 62.6
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 1.5e-62 243.8 211 58.8
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 1.9e-62 243.4 208 61.5
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.9e-62 243.4 208 61.5
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 4.3e-62 242.3 181 66.9
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 4.3e-62 242.3 175 68.6
Haze_11626 Corylus avellana HOM05D002342 ORTHO05D002407 5.7e-62 241.9 212 59.4
CiPaw.01G119200 Carya illinoinensis HOM05D002342 ORTHO05D002407 9.7e-62 241.1 184 65.8
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 2.8e-61 239.6 181 65.7
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 2.8e-61 239.6 179 65.9
RcHm_v2.0_Chr4g0414341 Rosa chinensis HOM05D002342 ORTHO05D002407 2.8e-61 239.6 226 58.4
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 4.8e-61 238.8 203 61.6
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 8.2e-61 238.0 177 66.7
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.4e-60 237.3 192 65.1
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 1.4e-60 237.3 226 55.3
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 2.4e-60 236.5 208 60.6
FAN17G0157 Fragaria x ananassa HOM05D002342 ORTHO05D002407 5.9e-59 231.9 180 66.1
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 2.9e-58 229.6 203 55.7
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 2.9e-58 229.6 266 50.8
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 3.8e-58 229.2 178 66.3
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 6.5e-58 228.4 204 58.8
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 1.4e-57 227.3 212 56.6
Lj6A526G34 Lonicera japonica HOM05D002342 ORTHO05D002407 2.5e-57 226.5 177 64.4
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 5.5e-57 225.3 178 63.5
Lj6C526T4 Lonicera japonica HOM05D002342 ORTHO05D002407 1.2e-56 224.2 207 58.0
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 1.2e-56 224.2 189 58.2
Hma1.2p1_0383F.1_g140360 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 3.6e-56 222.6 207 56.5
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 4.6e-56 222.2 174 62.6
VMungo1127G1482 Vigna mungo HOM05D002342 ORTHO05D002407 1.4e-55 220.7 210 58.1
Ciclev10004121m.g Citrus clementina HOM05D002342 ORTHO05D002407 1.8e-55 220.3 177 60.5
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 2.3e-55 219.9 172 65.7
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 2.3e-55 219.9 172 64.0
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 3.9e-55 219.2 240 52.9
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 5.1e-55 218.8 209 55.5
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 5.1e-55 218.8 235 52.8
MD04G1013300 Malus domestica HOM05D002342 ORTHO05D002407 5.1e-55 218.8 214 56.5
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 6.7e-55 218.4 253 48.2
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 6.7e-55 218.4 214 52.3
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 8.8e-55 218.0 202 54.5
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 2.0e-54 216.9 178 60.1
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 2.0e-54 216.9 203 55.7
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 3.3e-54 216.1 247 51.0
QL05p014269 Quercus lobata HOM05D002342 ORTHO05D002407 7.4e-54 214.9 202 55.4
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 9.7e-54 214.5 190 59.5
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 9.7e-54 214.5 181 59.7
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 9.7e-54 214.5 183 61.7
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 1.3e-53 214.2 180 57.8
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 1.7e-53 213.8 177 60.5
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 2.8e-53 213.0 179 58.7
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 1.1e-52 211.1 201 54.2
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 1.4e-52 210.7 210 53.3
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 1.8e-52 210.3 183 60.7
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 3.1e-52 209.5 172 62.2
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 5.3e-52 208.8 286 44.8
Psat7g074440 Pisum sativum HOM05D002342 ORTHO05D002407 5.3e-52 208.8 172 62.2
Prupe.1G159100 Prunus persica HOM05D002342 ORTHO05D002407 5.3e-52 208.8 178 59.6
QL05p014602 Quercus lobata HOM05D002342 ORTHO05D002407 5.3e-52 208.8 206 54.4
SHI00028 Sapria himalayana HOM05D002342 ORTHO05D002407 6.9e-52 208.4 213 52.6
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 9.1e-52 208.0 172 62.2
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 1.2e-51 207.6 200 54.5
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 1.5e-51 207.2 208 56.2
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 2.0e-51 206.8 183 58.5
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 2.6e-51 206.5 175 60.0
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 3.4e-51 206.1 181 54.7
Lalb_Chr12g0205531 Lupinus albus HOM05D002342 ORTHO05D002407 3.4e-51 206.1 173 61.3
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 3.4e-51 206.1 177 55.9
Atru.chr4.1628 Acer truncatum HOM05D002342 ORTHO05D002407 4.5e-51 205.7 181 56.4
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 4.5e-51 205.7 171 62.0
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 5.9e-51 205.3 178 58.4
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 7.7e-51 204.9 171 61.4
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 7.7e-51 204.9 264 48.1
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.3e-50 204.1 179 53.6
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 1.3e-50 204.1 177 61.6
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 2.9e-50 203.0 175 60.0
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 3.8e-50 202.6 260 42.3
Atru.chr4.1623 Acer truncatum HOM05D002342 ORTHO05D002407 6.5e-50 201.8 208 51.4
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 8.5e-50 201.4 179 58.7
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 1.9e-49 200.3 171 60.2
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 1.9e-49 200.3 204 52.9
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 2.5e-49 199.9 190 53.7
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 2.5e-49 199.9 180 54.4
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 5.5e-49 198.7 174 59.8
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 5.5e-49 198.7 297 43.4
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 7.2e-49 198.4 217 50.2
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 9.4e-49 198.0 197 54.8
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 1.2e-48 197.6 171 59.6
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.2e-48 197.6 185 54.1
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 1.2e-48 197.6 197 54.8
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 1.6e-48 197.2 176 57.4
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 2.1e-48 196.8 213 48.8
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 3.6e-48 196.1 204 52.0
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 4.7e-48 195.7 171 59.1
C08p07740 Brassica napus HOM05D002342 ORTHO05D002407 4.7e-48 195.7 171 59.1
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 4.7e-48 195.7 171 59.1
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 4.7e-48 195.7 205 49.3
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 6.1e-48 195.3 205 49.3
CARHR008150 Cardamine hirsuta HOM05D002342 ORTHO05D002407 7.9e-48 194.9 172 58.7
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 1.0e-47 194.5 171 59.6
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 1.4e-47 194.1 183 51.9
Hma1.2p1_0383F.1_g140570 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.8e-47 193.7 263 45.6
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 2.3e-47 193.4 171 58.5
VMungo1383G2708 Vigna mungo HOM05D002342 ORTHO05D002407 2.3e-47 193.4 210 53.8
Thhalv10006953m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 3.9e-47 192.6 253 47.8
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 5.1e-47 192.2 175 58.3
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 2.0e-46 190.3 208 49.5
AT1G08300 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 5.7e-46 188.7 176 58.5
BcaB07g34075 Brassica carinata HOM05D002342 ORTHO05D002407 7.4e-46 188.3 245 46.5
Carub.0001s0765 Capsella rubella HOM05D002342 ORTHO05D002407 7.4e-46 188.3 248 44.8
BcaB07g34076 Brassica carinata HOM05D000444 ORTHO05D000489 9.7e-46 188.0 256 45.7
Sp1g06930 Schrenkiella parvula HOM05D002342 ORTHO05D002407 1.3e-45 187.6 171 57.3
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 1.3e-45 187.6 180 53.9
C05p06400 Brassica napus HOM05D002342 ORTHO05D002407 3.7e-45 186.0 260 46.5
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 3.7e-45 186.0 190 51.6
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 8.2e-45 184.9 200 47.5
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.4e-44 184.1 162 56.8
BolC5t29395H Brassica oleracea HOM05D002342 ORTHO05D002407 1.8e-44 183.7 216 50.5
AL1G18700 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 3.1e-44 183.0 172 57.6
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 3.1e-44 183.0 256 46.5
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 2.6e-43 179.9 249 45.4
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 7.7e-43 178.3 176 48.3
FvH4_4g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 2.2e-42 176.8 181 55.2
Os03g0803800 Oryza sativa ssp. japonica HOM05D002342 ORTHO05D002407 1.1e-41 174.5 174 50.6
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 1.4e-41 174.1 202 47.0
Eucgr.H02758 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.4e-41 174.1 177 51.4
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 4.2e-41 172.6 192 46.4
Eucgr.H02752 Eucalyptus grandis HOM05D002342 ORTHO05D002407 4.2e-41 172.6 177 50.8
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 4.2e-41 172.6 178 52.2
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 5.5e-41 172.2 179 52.0
HPP92_020882 Vanilla planifolia HOM05D002342 ORTHO05D002407 1.4e-39 167.5 176 49.4
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 5.2e-39 165.6 249 41.0
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 5.2e-39 165.6 207 47.8
Lj6A525G37 Lonicera japonica HOM05D002342 ORTHO05D002407 8.8e-39 164.9 129 61.2
SEGI_11248 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 7.4e-38 161.8 192 44.8
ATR0829G161 Amborella trichopoda HOM05D002342 ORTHO05D002407 1.7e-37 160.6 187 44.4
vmacro00455 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 1.7e-37 160.6 133 60.9
Oeu054535.1 Olea europaea HOM05D002342 ORTHO05D002407 6.3e-37 158.7 129 57.4
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 8.2e-37 158.3 239 37.2
Oeu054534.1 Olea europaea HOM05D002342 ORTHO05D002407 1.1e-36 157.9 129 56.6
Lj6C516G5 Lonicera japonica HOM05D002342 ORTHO05D002407 4.2e-33 146.0 107 65.4
Lj6A517T27 Lonicera japonica HOM05D002342 ORTHO05D002407 1.6e-32 144.1 113 61.1
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 2.1e-32 143.7 203 40.9
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 8.8e-31 138.3 180 40.6
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 1.5e-30 137.5 166 46.4
HPP92_003883 Vanilla planifolia HOM05D002342 ORTHO05D002407 3.5e-27 126.3 172 40.1
AagrBONN_evm.TU.Sc2ySwM_228.1730 Anthoceros agrestis HOM05D002342 ORTHO05D002407 8.6e-18 95.1 151 31.8
FAN22G1019 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.2e-14 84.7 73 57.5
PGSC0003DMG401026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 1.2e-14 84.7 123 43.9
Lj6P517T17 Lonicera japonica HOM05D002342 ORTHO05D002407 2.6e-14 83.6 72 58.3
Lj6A516T56 Lonicera japonica HOM05D002342 ORTHO05D002407 4.4e-14 82.8 95 51.6
vmacro00456 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 4.4e-14 82.8 145 37.9
Lj6C516T2 Lonicera japonica HOM05D002342 ORTHO05D002407 1.3e-13 81.3 68 60.3
Lj6C524T11 Lonicera japonica HOM05D002342 ORTHO05D002407 2.1e-08 63.9 55 60.0
Cre14.g608200 Chlamydomonas reinhardtii HOM05D002342 ORTHO05D002407 5.2e-07 59.3 70 35.7
Cre14.g608150 Chlamydomonas reinhardtii HOM05D002342 ORTHO05D002407 1.2e-06 58.2 67 35.8
Prupe.1G358100 Prunus persica HOM05D002342 ORTHO05D002407 2.6e-06 57.0 46 56.5
AagrBONN_evm.TU.Sc2ySwM_228.1743 Anthoceros agrestis HOM05D002342 ORTHO05D002407 3.4e-06 56.6 151 25.2


User provided reference genes

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