Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c27218.1 Carica papaya HOM05D000508 ORTHO05D000371 7.0e-47 190.3 96 100.0
Cpa.g.sc1.242 Carica papaya HOM05D000508 ORTHO05D000371 1.1e-28 129.8 94 75.5
TAR374G0216 Trochodendron aralioides HOM05D000508 ORTHO05D000371 4.4e-25 117.9 100 63.0
Thecc.02G364200 Theobroma cacao HOM05D000508 ORTHO05D000371 1.3e-24 116.3 101 63.4
TAR622G1044 Trochodendron aralioides HOM05D000508 ORTHO05D000371 2.9e-24 115.2 100 62.0
Carub.0002s1529 Capsella rubella HOM05D000508 ORTHO05D000371 6.4e-24 114.0 101 64.4
Cpa.g.sc17.135 Carica papaya HOM05D000508 ORTHO05D000371 6.4e-24 114.0 82 76.8
Dinv16540 Davidia involucrata HOM05D000508 ORTHO05D000371 1.4e-23 112.8 100 59.0
GSVIVG01012001001 Vitis vinifera HOM05D000508 ORTHO05D000371 4.1e-23 111.3 100 57.0
Haze_11799 Corylus avellana HOM05D000508 ORTHO05D000371 5.4e-23 110.9 100 61.0
MD16G1050800 Malus domestica HOM05D000508 ORTHO05D000371 7.1e-23 110.5 100 58.0
Manes.06G075400 Manihot esculenta HOM05D000508 ORTHO05D000371 7.1e-23 110.5 97 61.9
RcHm_v2.0_Chr4g0436361 Rosa chinensis HOM05D000508 ORTHO05D000371 7.1e-23 110.5 103 60.2
Cfa008786 Carpinus fangiana HOM05D000508 ORTHO05D000371 9.2e-23 110.2 100 60.0
FAN12G1171 Fragaria x ananassa HOM05D000508 ORTHO05D000371 1.2e-22 109.8 103 59.2
FAN17G1153 Fragaria x ananassa HOM05D000508 ORTHO05D000371 1.2e-22 109.8 103 59.2
FAN22G0939 Fragaria x ananassa HOM05D000508 ORTHO05D000371 1.2e-22 109.8 103 59.2
Prupe.1G301900 Prunus persica HOM05D000508 ORTHO05D000371 1.6e-22 109.4 97 61.9
Potri.010G132300 Populus trichocarpa HOM05D000508 ORTHO05D000371 2.1e-22 109.0 101 59.4
AL2G27670 Arabidopsis lyrata HOM05D000508 ORTHO05D000371 2.7e-22 108.6 101 60.4
Lj2g0020731 Lotus japonicus HOM05D000508 ORTHO05D000371 2.7e-22 108.6 100 58.0
TAR371G1066 Trochodendron aralioides HOM05D000508 ORTHO05D000371 2.7e-22 108.6 100 57.0
CARHR061560 Cardamine hirsuta HOM05D000508 ORTHO05D000371 6.0e-22 107.5 101 60.4
FAN07G2235 Fragaria x ananassa HOM05D000508 ORTHO05D000371 6.0e-22 107.5 103 58.3
QL03p044657 Quercus lobata HOM05D000508 ORTHO05D000371 6.0e-22 107.5 102 57.8
BcaC08g46325 Brassica carinata HOM05D000508 ORTHO05D000371 7.8e-22 107.1 101 60.4
C06p41130 Brassica napus HOM05D000508 ORTHO05D000371 7.8e-22 107.1 101 60.4
BraA07t31107Z Brassica rapa HOM05D000508 ORTHO05D000371 7.8e-22 107.1 101 60.4
FvH4_4g28410 Fragaria vesca HOM05D000508 ORTHO05D000371 7.8e-22 107.1 103 58.3
A07p35140 Brassica napus HOM05D000508 ORTHO05D000371 1.0e-21 106.7 101 60.4
AT1G68740 Arabidopsis thaliana HOM05D000508 ORTHO05D000371 1.3e-21 106.3 100 61.0
Hma1.2p1_1391F.1_g280190 Hydrangea macrophylla HOM05D000508 ORTHO05D000371 1.3e-21 106.3 97 59.8
Lalb_Chr10g0099621 Lupinus albus HOM05D000508 ORTHO05D000371 1.3e-21 106.3 100 56.0
Nn4g23663 Nelumbo nucifera HOM05D000508 ORTHO05D000371 1.3e-21 106.3 105 59.0
BolC6t39312H Brassica oleracea HOM05D000508 ORTHO05D000371 2.3e-21 105.5 101 59.4
Thhalv10018143m.g Eutrema salsugineum HOM05D000508 ORTHO05D000371 5.1e-21 104.4 101 60.4
Sabra10G0101000 Salix brachista HOM05D000508 ORTHO05D000371 5.1e-21 104.4 101 56.4
Cpa.g.sc17.129 Carica papaya HOM05D000508 ORTHO05D000371 6.6e-21 104.0 82 69.5
Oeu054544.1 Olea europaea HOM05D000508 ORTHO05D000371 6.6e-21 104.0 97 57.7
Atru.chr11.1422 Acer truncatum HOM05D000508 ORTHO05D000371 8.6e-21 103.6 104 62.5
Lalb_Chr17g0341811 Lupinus albus HOM05D000508 ORTHO05D000371 8.6e-21 103.6 100 55.0
TWI79G0391 Tripterygium wilfordii HOM05D000508 ORTHO05D000371 8.6e-21 103.6 101 55.4
BcaB03g15844 Brassica carinata HOM05D000508 ORTHO05D000371 1.1e-20 103.2 101 58.4
BcaB05g24407 Brassica carinata HOM05D000508 ORTHO05D000371 1.5e-20 102.8 101 58.4
CiPaw.06G098800 Carya illinoinensis HOM05D000508 ORTHO05D000371 1.5e-20 102.8 100 57.0
VMungo1215G2506 Vigna mungo HOM05D000508 ORTHO05D000371 1.5e-20 102.8 100 55.0
Rhsim12G0080400 Rhododendron simsii HOM05D000508 ORTHO05D000371 3.3e-20 101.7 99 55.6
CSS0023074 Camellia sinensis var. sinensis HOM05D000508 ORTHO05D000371 4.3e-20 101.3 99 57.6
Glyma.02G130200 Glycine max HOM05D000508 ORTHO05D000371 4.3e-20 101.3 98 55.1
Lj6A769T88 Lonicera japonica HOM05D000508 ORTHO05D000371 4.3e-20 101.3 102 57.8
arahy.Tifrunner.gnm1.ann1.CQ1FSZ Arachis hypogaea HOM05D000508 ORTHO05D000371 7.3e-20 100.5 101 55.4
arahy.Tifrunner.gnm1.ann1.L2BPVG Arachis hypogaea HOM05D000508 ORTHO05D000371 7.3e-20 100.5 101 55.4
Lj3C1022T8 Lonicera japonica HOM05D000508 ORTHO05D000371 7.3e-20 100.5 100 55.0
Aa31sc12G20 Aethionema arabicum HOM05D000508 ORTHO05D000371 9.5e-20 100.1 104 52.9
A02p15300 Brassica napus HOM05D000508 ORTHO05D000371 9.5e-20 100.1 101 57.4
Gohir.A12G173200 Gossypium hirsutum HOM05D000508 ORTHO05D000371 1.2e-19 99.8 103 60.2
MD13G1049800 Malus domestica HOM05D000508 ORTHO05D000371 1.2e-19 99.8 100 53.0
COL.COLO4_11240 Corchorus olitorius HOM05D000508 ORTHO05D000371 1.6e-19 99.4 100 61.0
A07p31810 Brassica napus HOM05D000508 ORTHO05D000371 2.1e-19 99.0 101 55.4
CSS0029303 Camellia sinensis var. sinensis HOM05D000508 ORTHO05D000371 2.1e-19 99.0 101 51.5
Gorai.008G188200 Gossypium raimondii HOM05D000508 ORTHO05D000371 2.1e-19 99.0 102 58.8
PGR102G2606 Punica granatum HOM05D000508 ORTHO05D000371 2.1e-19 99.0 103 52.4
BcaC03g14980 Brassica carinata HOM05D000508 ORTHO05D000371 2.8e-19 98.6 101 56.4
C02p25150 Brassica napus HOM05D000508 ORTHO05D000371 2.8e-19 98.6 101 56.4
BolC2t08594H Brassica oleracea HOM05D000508 ORTHO05D000371 2.8e-19 98.6 101 56.4
Gohir.D12G175800 Gossypium hirsutum HOM05D000508 ORTHO05D000371 2.8e-19 98.6 102 58.8
Sp5g23850 Schrenkiella parvula HOM05D000508 ORTHO05D000371 2.8e-19 98.6 101 56.4
CANSAT64G2793 Cannabis sativa HOM05D000508 ORTHO05D000371 3.6e-19 98.2 105 57.1
Oeu024117.2 Olea europaea HOM05D000508 ORTHO05D000371 3.6e-19 98.2 97 57.7
BolC6t38838H Brassica oleracea HOM05D000508 ORTHO05D000371 6.2e-19 97.4 101 55.4
BcaNung06172 Brassica carinata HOM05D000508 ORTHO05D000371 8.1e-19 97.1 102 55.9
BraA02t06592Z Brassica rapa HOM05D000508 ORTHO05D000371 8.1e-19 97.1 100 56.0
Lj4g0004399 Lotus japonicus HOM05D000508 ORTHO05D000371 8.1e-19 97.1 99 54.5
Phvul.003G024600 Phaseolus vulgaris HOM05D000508 ORTHO05D000371 8.1e-19 97.1 100 55.0
Actinidia16602 Actinidia chinensis HOM05D000508 ORTHO05D000371 1.1e-18 96.7 100 54.0
Lalb_Chr04g0255151 Lupinus albus HOM05D000508 ORTHO05D000371 1.1e-18 96.7 101 52.5
TWI75G1005 Tripterygium wilfordii HOM05D000508 ORTHO05D000371 1.1e-18 96.7 106 54.7
Actinidia13694 Actinidia chinensis HOM05D000508 ORTHO05D000371 1.4e-18 96.3 100 52.0
THA.LOC104821973 Tarenaya hassleriana HOM05D000508 ORTHO05D000371 1.8e-18 95.9 102 56.9
BcaC08g45943 Brassica carinata HOM05D000508 ORTHO05D000371 2.3e-18 95.5 102 56.9
C06p37360 Brassica napus HOM05D000508 ORTHO05D000371 2.3e-18 95.5 102 56.9
Cc11_g10900 Coffea canephora HOM05D000508 ORTHO05D000371 2.3e-18 95.5 100 52.0
Eucgr.B03070 Eucalyptus grandis HOM05D000508 ORTHO05D000371 2.3e-18 95.5 101 52.5
Glyma.01G091800 Glycine max HOM05D000508 ORTHO05D000371 3.1e-18 95.1 98 53.1
BraA07t30808Z Brassica rapa HOM05D000508 ORTHO05D000371 4.0e-18 94.7 101 53.5
MSTRG.13493 Avicennia marina HOM05D000508 ORTHO05D000371 8.9e-18 93.6 100 54.0
Ciclev10030739m.g Citrus clementina HOM05D000508 ORTHO05D000371 8.9e-18 93.6 74 66.2
Peaxi162Scf00198g00043 Petunia axillaris HOM05D000508 ORTHO05D000371 8.9e-18 93.6 101 53.5
PGR119G0304 Punica granatum HOM05D000508 ORTHO05D000371 1.2e-17 93.2 95 51.6
BcaC03g14331 Brassica carinata HOM05D000508 ORTHO05D000371 1.5e-17 92.8 87 60.9
MELO3C012200.2 Cucumis melo HOM05D000508 ORTHO05D000371 2.0e-17 92.4 100 55.0
vmacro01358 Vaccinium macrocarpon HOM05D000508 ORTHO05D000371 2.0e-17 92.4 99 51.5
Gorai.001G075500 Gossypium raimondii HOM05D000508 ORTHO05D000371 2.6e-17 92.0 92 59.8
Migut.E00283 Erythranthe guttata HOM05D000508 ORTHO05D000371 3.4e-17 91.7 97 50.5
Solyc05g010060.4 Solanum lycopersicum HOM05D000508 ORTHO05D000371 3.4e-17 91.7 104 55.8
vmacro10505 Vaccinium macrocarpon HOM05D000508 ORTHO05D000371 3.4e-17 91.7 101 53.5
Psat4g113960 Pisum sativum HOM05D000508 ORTHO05D000371 4.4e-17 91.3 95 52.6
MSTRG.7699 Avicennia marina HOM05D000508 ORTHO05D000371 5.8e-17 90.9 102 52.9
CsaV3_5G033820 Cucumis sativus L. HOM05D000508 ORTHO05D000371 5.8e-17 90.9 100 55.0
Medtr8g069955 Medicago truncatula HOM05D000508 ORTHO05D000371 5.8e-17 90.9 101 49.5
Nitab4.5_0003073g0020 Nicotiana tabacum HOM05D000508 ORTHO05D000371 7.6e-17 90.5 98 54.1
Aqoxy3G03848 Aquilegia oxysepala HOM05D000508 ORTHO05D000371 9.9e-17 90.1 102 48.0
Gohir.D03G108350 Gossypium hirsutum HOM05D000508 ORTHO05D000371 1.3e-16 89.7 92 58.7
Oeu041862.2 Olea europaea HOM05D000508 ORTHO05D000371 1.7e-16 89.4 85 60.0
CAN.G184.65 Capsicum annuum HOM05D000508 ORTHO05D000371 2.2e-16 89.0 105 56.2
Ca_22517_v3 Cicer arietinum L. HOM05D000508 ORTHO05D000371 2.2e-16 89.0 101 49.5
TPR.G24783 Trifolium pratense HOM05D000508 ORTHO05D000371 2.9e-16 88.6 100 48.0
Potri.008G110800 Populus trichocarpa HOM05D000508 ORTHO05D000371 3.7e-16 88.2 101 51.5
Sed0007570 Sechium edule HOM05D000508 ORTHO05D000371 3.7e-16 88.2 100 55.0
Sopen05g005860 Solanum pennellii HOM05D000508 ORTHO05D000371 3.7e-16 88.2 99 54.5
HPP92_011594 Vanilla planifolia HOM05D000508 ORTHO05D000371 4.9e-16 87.8 86 57.0
CDE06G1976 Ceratophyllum demersum HOM05D000508 ORTHO05D000371 8.3e-16 87.0 94 53.2
DCAR_030098 Daucus carota HOM05D000508 ORTHO05D000371 1.1e-15 86.7 100 52.0
Duzib251G0374 Durio zibethinus HOM05D000508 ORTHO05D000371 1.9e-15 85.9 74 64.9
PSO170G6666 Papaver somniferum HOM05D000508 ORTHO05D000371 1.9e-15 85.9 102 52.0
SalBow8G0002 Salvia bowleyana HOM05D000508 ORTHO05D000371 2.4e-15 85.5 103 49.5
SalBow8G0876 Salvia bowleyana HOM05D000508 ORTHO05D000371 2.4e-15 85.5 103 49.5
CDE07G0571 Ceratophyllum demersum HOM05D000508 ORTHO05D000371 3.2e-15 85.1 89 53.9
arahy.Tifrunner.gnm1.ann1.FUV8EA Arachis hypogaea HOM05D000508 ORTHO05D000371 4.1e-15 84.7 101 51.5
Nitab4.5_0010558g0040 Nicotiana tabacum HOM05D000508 ORTHO05D000371 4.1e-15 84.7 98 51.0
Sed0024808 Sechium edule HOM05D000508 ORTHO05D000371 5.4e-15 84.3 105 48.6
PSO407G0368 Papaver somniferum HOM05D000508 ORTHO05D000371 9.2e-15 83.6 100 49.0
arahy.Tifrunner.gnm1.ann1.E69UQ4 Arachis hypogaea HOM05D000508 ORTHO05D000371 1.2e-14 83.2 101 50.5
ClCG05G023190 Citrullus lanatus HOM05D000508 ORTHO05D000371 1.6e-14 82.8 100 53.0
Oeu044396.1 Olea europaea HOM05D000508 ORTHO05D000371 1.6e-14 82.8 75 60.0
unitig_27.g25230 Utricularia gibba HOM05D000508 ORTHO05D000371 1.6e-14 82.8 100 49.0
SalBow8G5083 Salvia bowleyana HOM05D000508 ORTHO05D000371 2.1e-14 82.4 90 56.7
Lsat_1_v5_gn_4_20480 Lactuca sativa HOM05D000508 ORTHO05D000371 2.7e-14 82.0 112 46.4
Lalb_Chr05g0229141 Lupinus albus HOM05D000508 ORTHO05D000371 6.0e-14 80.9 97 47.4
Rhsim09G0114800 Rhododendron simsii HOM05D000508 ORTHO05D000371 6.0e-14 80.9 103 50.5
AUR62007755 Chenopodium quinoa HOM05D000508 ORTHO05D000371 7.8e-14 80.5 103 47.6
Sc04g0006880 Simmondsia chinensis HOM05D000508 ORTHO05D000371 2.3e-13 79.0 101 45.5
Eucgr.G02378 Eucalyptus grandis HOM05D000508 ORTHO05D000371 3.0e-13 78.6 103 45.6
Sabra08G0083900 Salix brachista HOM05D000508 ORTHO05D000371 6.6e-13 77.4 68 57.4
DCAR_007216 Daucus carota HOM05D000508 ORTHO05D000371 8.6e-13 77.0 105 50.5
C02p17530 Brassica napus HOM05D000508 ORTHO05D000371 1.9e-12 75.9 100 45.0
AUR62002949 Chenopodium quinoa HOM05D000508 ORTHO05D000371 9.6e-12 73.6 85 48.2
MBI10_g18307_MAGBIO Magnolia biondii HOM05D000508 ORTHO05D000371 1.2e-11 73.2 40 87.5
ECA234G3002 Erigeron canadensis HOM05D000508 ORTHO05D000371 2.1e-11 72.4 105 43.8
Nn3g17660 Nelumbo nucifera HOM05D000508 ORTHO05D000371 2.8e-11 72.0 58 65.5
SGA_v2.0_scaffold14G06796 Striga asiatica HOM05D000508 ORTHO05D000371 8.1e-11 70.5 97 41.2
ATR0598G309 Amborella trichopoda HOM05D000508 ORTHO05D000371 1.8e-10 69.3 91 48.4
EL10Ac6g14538 Beta vulgaris HOM05D000508 ORTHO05D000371 2.4e-10 68.9 102 41.2
Migut.L01114 Erythranthe guttata HOM05D000508 ORTHO05D000371 2.4e-10 68.9 86 47.7
HanXRQChr16g0528331 Helianthus annuus HOM05D000508 ORTHO05D000371 5.2e-10 67.8 106 42.5
Ah.02g127320 Amaranthus hybridus HOM05D000508 ORTHO05D000371 1.5e-09 66.2 93 44.1
Nn1g02861 Nelumbo nucifera HOM05D000508 ORTHO05D000371 8.4e-08 60.5 40 65.0
HanXRQChr17g0568541 Helianthus annuus HOM05D000508 ORTHO05D000371 2.4e-07 58.9 99 42.4
PSO063G1268 Papaver somniferum HOM05D000508 ORTHO05D000371 1.2e-06 56.6 40 67.5
Thecc.04G259300 Theobroma cacao HOM05D000508 ORTHO05D000371 1.2e-06 56.6 40 65.0
Nn3g19724 Nelumbo nucifera HOM05D000508 ORTHO05D000371 2.7e-06 55.5 65 46.2
VMungo0720G0282 Vigna mungo HOM05D000508 ORTHO05D000371 3.5e-06 55.1 106 38.7
Zm00001eb126380 Zea mays HOM05D000508 ORTHO05D000371 4.6e-06 54.7 106 38.7
COL.COLO4_15920 Corchorus olitorius HOM05D000508 ORTHO05D000371 6.0e-06 54.3 40 62.5
Duzib151G0946 Durio zibethinus HOM05D000508 ORTHO05D000371 6.0e-06 54.3 40 60.0
Glyma.10G004800 Glycine max HOM05D000508 ORTHO05D000371 6.0e-06 54.3 77 42.9
Gohir.A02G040600 Gossypium hirsutum HOM05D000508 ORTHO05D000371 6.0e-06 54.3 50 54.0
Gohir.D02G046600 Gossypium hirsutum HOM05D000508 ORTHO05D000371 6.0e-06 54.3 50 54.0
Gorai.005G051400 Gossypium raimondii HOM05D000508 ORTHO05D000371 6.0e-06 54.3 50 54.0
Rhsim04G0175700 Rhododendron simsii HOM05D000508 ORTHO05D000371 6.0e-06 54.3 50 50.0
PSO017G5409 Papaver somniferum HOM05D000508 ORTHO05D000371 7.8e-06 53.9 40 65.0


User provided reference genes

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