Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c26343.2 Carica papaya HOM05D007502 ORTHO05D010230 5.4e-105 384.4 206 100.0
Ciclev10027603m.g Citrus clementina HOM05D007502 ORTHO05D010230 5.2e-23 112.1 177 48.0
Prupe.6G218900 Prunus persica HOM05D007502 ORTHO05D010230 5.8e-22 108.6 174 46.6
Potri.007G006000 Populus trichocarpa HOM05D007502 ORTHO05D010230 7.5e-22 108.2 202 43.6
MD15G1299000 Malus domestica HOM05D007502 ORTHO05D010230 9.8e-22 107.8 168 47.0
CSS0024819 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 3.7e-21 105.9 179 44.1
CiPaw.01G003100 Carya illinoinensis HOM05D007502 ORTHO05D010230 2.4e-20 103.2 176 46.0
Cfa004764 Carpinus fangiana HOM05D007502 ORTHO05D010230 1.3e-18 97.4 187 42.8
Thecc.01G074400 Theobroma cacao HOM05D007502 ORTHO05D010230 1.7e-18 97.1 191 42.4
Gorai.007G225000 Gossypium raimondii HOM05D007502 ORTHO05D010230 2.3e-18 96.7 191 44.0
QL06p039372 Quercus lobata HOM05D007502 ORTHO05D010230 2.3e-18 96.7 191 41.9
Gohir.D11G209800 Gossypium hirsutum HOM05D007502 ORTHO05D010230 2.5e-17 93.2 185 43.2
Haze_10361 Corylus avellana HOM05D007502 ORTHO05D010230 3.3e-17 92.8 186 41.9
BcaB02g09909 Brassica carinata HOM05D007502 ORTHO05D010230 5.6e-17 92.0 181 42.5
Gohir.A11G213400 Gossypium hirsutum HOM05D007502 ORTHO05D010230 7.3e-17 91.7 190 41.6
vmacro05426 Vaccinium macrocarpon HOM05D007502 ORTHO05D010230 1.6e-16 90.5 170 41.8
Duzib187G0517 Durio zibethinus HOM05D007502 ORTHO05D010230 2.8e-16 89.7 198 38.9
CARHR279950 Cardamine hirsuta HOM05D007502 ORTHO05D010230 4.7e-16 89.0 170 42.4
AT5G67640 Arabidopsis thaliana HOM05D007502 ORTHO05D010230 1.1e-15 87.8 186 41.4
RcHm_v2.0_Chr2g0108411 Rosa chinensis HOM05D007502 ORTHO05D010230 1.1e-15 87.8 167 43.7
COL.COLO4_11595 Corchorus olitorius HOM05D007502 ORTHO05D010230 1.8e-15 87.0 194 42.8
Carub.0008s2683 Capsella rubella HOM05D007502 ORTHO05D010230 2.3e-15 86.7 186 43.5
Thhalv10005075m.g Eutrema salsugineum HOM05D007502 ORTHO05D010230 5.2e-15 85.5 135 46.7
A06p32780 Brassica napus HOM05D007502 ORTHO05D011692 6.8e-15 85.1 169 44.4
Lalb_Chr05g0213781 Lupinus albus HOM05D007502 ORTHO05D010230 6.8e-15 85.1 187 36.4
C03p59700 Brassica napus HOM05D007502 ORTHO05D011692 1.5e-14 84.0 169 45.0
BolC3t18232H Brassica oleracea HOM05D007502 ORTHO05D011692 1.5e-14 84.0 169 45.0
BraA06t26210Z Brassica rapa HOM05D007502 ORTHO05D011692 2.6e-14 83.2 168 43.5
Medtr5g015230 Medicago truncatula HOM05D007502 ORTHO05D010230 2.6e-14 83.2 174 40.8
Lj2g0008607 Lotus japonicus HOM05D007502 ORTHO05D010230 9.8e-14 81.3 194 35.6
Solyc02g092200.3 Solanum lycopersicum HOM05D007502 ORTHO05D010230 9.8e-14 81.3 173 37.6
DCAR_025816 Daucus carota HOM05D007502 ORTHO05D010230 1.7e-13 80.5 167 37.7
Glyma.11G046600 Glycine max HOM05D007502 ORTHO05D010230 1.7e-13 80.5 170 38.2
CANSAT01G3167 Cannabis sativa HOM05D007502 ORTHO05D010230 8.3e-13 78.2 177 36.7
Sabra07G0004300 Salix brachista HOM05D007502 ORTHO05D010230 8.3e-13 78.2 198 38.4
RhsimUnG0241800 Rhododendron simsii HOM05D007502 ORTHO05D010230 1.1e-12 77.8 142 43.0
Phvul.002G009800 Phaseolus vulgaris HOM05D007502 ORTHO05D010230 1.9e-12 77.0 192 37.5
Psat2g171920 Pisum sativum HOM05D007502 ORTHO05D010230 1.9e-12 77.0 127 43.3
TAR628G1349 Trochodendron aralioides HOM05D007502 ORTHO05D010230 3.2e-12 76.3 171 42.7
Actinidia11971 Actinidia chinensis HOM05D007502 ORTHO05D010230 4.1e-12 75.9 178 39.3
Nitab4.5_0000142g0280 Nicotiana tabacum HOM05D007502 ORTHO05D010230 4.1e-12 75.9 181 37.6
Sopen02g036770 Solanum pennellii HOM05D007502 ORTHO05D010230 4.1e-12 75.9 182 36.3
MSTRG.3478 Avicennia marina HOM05D007502 ORTHO05D010230 5.4e-12 75.5 146 41.8
Eucgr.I00691 Eucalyptus grandis HOM05D007502 ORTHO05D010230 1.2e-11 74.3 192 38.5
CSS0004026 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 2.0e-11 73.6 129 42.6
Dinv26948 Davidia involucrata HOM05D001896 ORTHO05D001862 2.0e-11 73.6 138 42.0
GSVIVG01002329001 Vitis vinifera HOM05D007502 ORTHO05D010230 2.0e-11 73.6 180 40.0
Cc07_g07260 Coffea canephora HOM05D007502 ORTHO05D010230 3.5e-11 72.8 163 38.7
arahy.Tifrunner.gnm1.ann1.69I0H7 Arachis hypogaea HOM05D007502 ORTHO05D010230 7.8e-11 71.6 176 35.8
VMungo1215G1334 Vigna mungo HOM05D007502 ORTHO05D010230 2.3e-10 70.1 192 35.4
Ca_24677_v3 Cicer arietinum L. HOM05D007502 ORTHO05D010230 1.1e-09 67.8 114 42.1
arahy.Tifrunner.gnm1.ann1.W7GVX2 Arachis hypogaea HOM05D007502 ORTHO05D010230 7.3e-09 65.1 180 36.1
Peaxi162Scf00548g00223 Petunia axillaris HOM05D007502 ORTHO05D010230 3.6e-08 62.8 112 42.0
PGSC0003DMG401021412 Solanum tuberosum HOM05D007502 ORTHO05D010230 4.7e-08 62.4 161 35.4
Glyma.01G195100 Glycine max HOM05D007502 ORTHO05D010230 6.2e-08 62.0 108 38.9
AL8G43660 Arabidopsis lyrata HOM05D007502 ORTHO05D010230 8.1e-08 61.6 149 38.3
ECA238G4396 Erigeron canadensis HOM05D007502 ORTHO05D010230 3.1e-07 59.7 187 29.4
SEGI_05256 Sequoiadendron giganteum HOM05D007502 ORTHO05D010230 3.1e-07 59.7 209 31.6
Lsat_1_v5_gn_2_82580 Lactuca sativa HOM05D007502 ORTHO05D010230 8.9e-07 58.2 187 30.5
HanXRQChr01g0002171 Helianthus annuus HOM05D007502 ORTHO05D010230 2.0e-06 57.0 147 34.0
Lsat_1_v5_gn_5_174300 Lactuca sativa HOM05D007502 ORTHO05D010230 4.4e-06 55.8 105 38.1
Aa31LG1G16180 Aethionema arabicum HOM05D007502 ORTHO05D010230 9.9e-06 54.7 150 31.3


User provided reference genes

Program Settings