Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c24415.2 Carica papaya HOM05D002103 ORTHO05D007890 3.7e-97 358.2 183 100.0
Haze_18960 Corylus avellana HOM05D002103 ORTHO05D007890 1.1e-64 250.4 183 67.8
Haze_17544 Corylus avellana HOM05D002103 ORTHO05D004020 5.4e-64 248.1 183 67.8
Haze_17553 Corylus avellana HOM05D002103 ORTHO05D004020 5.4e-64 248.1 183 67.8
Dinv35973 Davidia involucrata HOM05D002103 ORTHO05D004020 4.6e-63 245.0 175 67.4
QL02p005396 Quercus lobata HOM05D002103 ORTHO05D007890 1.0e-62 243.8 182 63.7
Atru.chr13.649 Acer truncatum HOM05D002103 ORTHO05D007890 1.3e-62 243.4 183 66.7
CiPaw.16G045900 Carya illinoinensis HOM05D002103 ORTHO05D007890 1.5e-61 240.0 182 66.5
Ciclev10003422m.g Citrus clementina HOM05D002103 ORTHO05D007890 1.6e-60 236.5 183 62.8
Thecc.08G011000 Theobroma cacao HOM05D002103 ORTHO05D007890 8.1e-60 234.2 176 65.3
COL.COLO4_26477 Corchorus olitorius HOM05D002103 ORTHO05D007890 3.1e-59 232.3 177 64.4
Potri.014G032000 Populus trichocarpa HOM05D002103 ORTHO05D007890 5.2e-59 231.5 183 61.2
Prupe.1G438600 Prunus persica HOM05D002103 ORTHO05D007890 1.3e-57 226.9 181 63.5
Sabra14G0022500 Salix brachista HOM05D002103 ORTHO05D007890 1.7e-57 226.5 176 63.6
Gohir.A03G078312 Gossypium hirsutum HOM05D002103 ORTHO05D007890 4.9e-57 224.9 183 59.0
TAR381G1315 Trochodendron aralioides HOM05D002103 ORTHO05D007890 4.9e-57 224.9 177 63.8
Duzib093G0968 Durio zibethinus HOM05D002103 ORTHO05D007890 8.3e-57 224.2 183 59.6
CSS0015524 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D007890 1.1e-56 223.8 184 60.9
TWI56G0989 Tripterygium wilfordii HOM05D002103 ORTHO05D007890 3.2e-56 222.2 180 59.4
CSS0029487 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D007890 5.4e-56 221.5 183 60.1
Gohir.D02G092000 Gossypium hirsutum HOM05D002103 ORTHO05D007890 5.4e-56 221.5 183 58.5
TAR628G0377 Trochodendron aralioides HOM05D000369 ORTHO05D007890 7.1e-56 221.1 183 63.9
Gorai.005G103400 Gossypium raimondii HOM05D002103 ORTHO05D007890 9.2e-56 220.7 183 58.5
FvH4_2g34630 Fragaria vesca HOM05D002103 ORTHO05D007890 2.7e-55 219.2 181 60.8
RcHm_v2.0_Chr6g0307451 Rosa chinensis HOM05D002103 ORTHO05D007890 3.5e-55 218.8 181 60.2
Hma1.2p1_0982F.1_g243870 Hydrangea macrophylla HOM05D002103 ORTHO05D007890 6.0e-55 218.0 183 57.4
Manes.03G089400 Manihot esculenta HOM05D002103 ORTHO05D007890 7.8e-55 217.6 186 59.7
RcHm_v2.0_Chr7g0208301 Rosa chinensis HOM05D002103 ORTHO05D007890 1.3e-54 216.9 181 59.7
MD15G1084800 Malus domestica HOM05D002103 ORTHO05D007890 3.0e-54 215.7 181 61.3
FAN20G2285 Fragaria x ananassa HOM05D002103 ORTHO05D007890 6.6e-54 214.5 181 59.7
Glyma.11G102400 Glycine max HOM05D002103 ORTHO05D007890 6.6e-54 214.5 177 61.0
arahy.Tifrunner.gnm1.ann1.7RGS7A Arachis hypogaea HOM05D002103 ORTHO05D007890 8.6e-54 214.2 176 63.1
Nn5g30226 Nelumbo nucifera HOM05D002103 ORTHO05D007890 1.9e-53 213.0 172 61.0
VMungo1127G1488 Vigna mungo HOM05D002103 ORTHO05D007890 1.9e-53 213.0 176 62.5
MD08G1103500 Malus domestica HOM05D002103 ORTHO05D007890 3.3e-53 212.2 180 60.6
Cc10_g04330 Coffea canephora HOM05D002103 ORTHO05D007890 4.7e-52 208.4 181 55.8
Phvul.011G031400 Phaseolus vulgaris HOM05D002103 ORTHO05D007890 4.7e-52 208.4 179 59.8
Lj4C53T13 Lonicera japonica HOM05D002103 ORTHO05D007890 3.1e-51 205.7 186 58.1
MSTRG.22267 Avicennia marina HOM05D002103 ORTHO05D007890 4.0e-51 205.3 176 55.7
Eucgr.F00241 Eucalyptus grandis HOM05D002103 ORTHO05D007890 5.2e-51 204.9 178 57.3
Medtr3g006810 Medicago truncatula HOM05D002103 ORTHO05D007890 6.8e-51 204.5 176 58.5
Medtr6g003930 Medicago truncatula HOM05D002103 ORTHO05D007890 8.9e-51 204.1 176 58.0
Sc02g0007040 Simmondsia chinensis HOM05D002103 ORTHO05D004020 1.5e-50 203.4 177 56.5
Lalb_Chr23g0267731 Lupinus albus HOM05D002103 ORTHO05D007890 3.4e-50 202.2 169 60.4
Lj3P736T14 Lonicera japonica HOM05D002103 ORTHO05D007890 4.4e-50 201.8 186 57.5
Dinv39329 Davidia involucrata HOM05D002103 ORTHO05D007890 9.9e-50 200.7 159 63.5
Aa31LG9G11870 Aethionema arabicum HOM05D002103 ORTHO05D007890 2.9e-49 199.1 182 54.9
CARHR261220 Cardamine hirsuta HOM05D002103 ORTHO05D007890 2.9e-49 199.1 184 54.9
ClCG08G015720 Citrullus lanatus HOM05D002103 ORTHO05D007890 3.8e-49 198.7 168 58.3
AL6G43940 Arabidopsis lyrata HOM05D002103 ORTHO05D007890 6.4e-49 198.0 180 52.2
Carub.0006s2870 Capsella rubella HOM05D002103 ORTHO05D007890 6.4e-49 198.0 183 54.1
Lj3g0001779 Lotus japonicus HOM05D002103 ORTHO05D007890 6.4e-49 198.0 178 57.3
Sed0021207 Sechium edule HOM05D002103 ORTHO05D007890 8.4e-49 197.6 173 55.5
Sp6g07290 Schrenkiella parvula HOM05D002103 ORTHO05D007890 2.4e-48 196.1 183 54.1
SpUn0121_0020 Schrenkiella parvula HOM05D002103 ORTHO05D007890 2.4e-48 196.1 183 54.1
Aqoxy7G04203 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 3.2e-48 195.7 172 57.6
FAN27G2960 Fragaria x ananassa HOM05D002103 ORTHO05D007890 3.2e-48 195.7 160 61.9
AT4G10130 Arabidopsis thaliana HOM05D002103 ORTHO05D007890 4.1e-48 195.3 178 53.4
Aqoxy1G02088 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 5.4e-48 194.9 172 57.0
PSO339G5974 Papaver somniferum HOM05D002103 ORTHO05D007890 7.1e-48 194.5 170 55.3
Psat5g230280 Pisum sativum HOM05D002103 ORTHO05D007890 7.1e-48 194.5 174 56.3
Ca_14028_v3 Cicer arietinum L. HOM05D002103 ORTHO05D007890 1.2e-47 193.7 171 57.9
CsaV3_2G028050 Cucumis sativus L. HOM05D002103 ORTHO05D007890 1.2e-47 193.7 167 57.5
TPR.G32346 Trifolium pratense HOM05D002103 ORTHO05D007890 1.2e-47 193.7 179 53.6
Aqoxy1G04301 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 1.6e-47 193.4 172 56.4
THA.LOC104802577 Tarenaya hassleriana HOM05D002103 ORTHO05D007890 2.7e-47 192.6 182 54.4
Migut.N02701 Erythranthe guttata HOM05D002103 ORTHO05D007890 4.6e-47 191.8 176 51.7
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 4.6e-47 191.8 181 51.4
MELO3C010884.2 Cucumis melo HOM05D002103 ORTHO05D007890 1.0e-46 190.7 173 54.3
PSO801G0348 Papaver somniferum HOM05D002103 ORTHO05D007890 1.0e-46 190.7 170 54.7
Thhalv10029407m.g Eutrema salsugineum HOM05D002103 ORTHO05D007890 1.3e-46 190.3 182 53.8
Lj1g0021003 Lotus japonicus HOM05D002103 ORTHO05D007890 1.7e-46 189.9 180 55.6
PSO210G1636 Papaver somniferum HOM05D002103 ORTHO05D007890 1.7e-46 189.9 171 53.8
CAN.G1422.7 Capsicum annuum HOM05D002103 ORTHO05D007890 2.3e-46 189.5 182 50.5
PGR083G1082 Punica granatum HOM05D002103 ORTHO05D007890 3.0e-46 189.1 180 51.7
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 5.1e-46 188.3 133 69.9
PSO170G0070 Papaver somniferum HOM05D002103 ORTHO05D007890 5.1e-46 188.3 170 54.7
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 8.7e-46 187.6 181 51.4
PGSC0003DMG400015418 Solanum tuberosum HOM05D002103 ORTHO05D007890 2.5e-45 186.0 183 49.2
Duzib116G0248 Durio zibethinus HOM05D002103 ORTHO05D007890 5.6e-45 184.9 150 60.0
FAN15G2894 Fragaria x ananassa HOM05D002103 ORTHO05D004020 7.3e-45 184.5 161 60.2
Sopen12g030780 Solanum pennellii HOM05D002103 ORTHO05D007890 7.3e-45 184.5 183 48.6
Oeu011541.1 Olea europaea HOM05D002103 ORTHO05D007890 1.2e-44 183.7 176 51.7
A09p28810 Brassica napus HOM05D002103 ORTHO05D007890 1.6e-44 183.3 181 52.5
BraA09t38443Z Brassica rapa HOM05D002103 ORTHO05D007890 1.6e-44 183.3 181 52.5
EL10Ac3g05247 Beta vulgaris HOM05D002103 ORTHO05D007890 3.6e-44 182.2 175 52.6
Nitab4.5_0004376g0080 Nicotiana tabacum HOM05D002103 ORTHO05D007890 4.7e-44 181.8 183 50.8
BcaC04g21020 Brassica carinata HOM05D002103 ORTHO05D007890 6.2e-44 181.4 181 51.9
C09p36600 Brassica napus HOM05D002103 ORTHO05D007890 6.2e-44 181.4 181 51.9
BolC9t56492H Brassica oleracea HOM05D002103 ORTHO05D007890 6.2e-44 181.4 181 51.9
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 8.1e-44 181.0 171 52.6
Oeu011560.1 Olea europaea HOM05D002103 ORTHO05D007890 1.1e-43 180.6 176 51.1
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 1.8e-43 179.9 173 49.7
BcaB01g01453 Brassica carinata HOM05D002103 ORTHO05D007890 2.4e-43 179.5 181 50.8
BcaB05g23918 Brassica carinata HOM05D002103 ORTHO05D007890 4.0e-43 178.7 186 49.5
ECA247G1332 Erigeron canadensis HOM05D002103 ORTHO05D007890 1.2e-42 177.2 173 49.7
Sc19g0008280 Simmondsia chinensis HOM05D002103 ORTHO05D007890 2.6e-42 176.0 147 58.5
arahy.Tifrunner.gnm1.ann1.MW41KC Arachis hypogaea HOM05D002103 ORTHO05D007890 4.4e-42 175.3 143 63.6
HanXRQChr12g0375061 Helianthus annuus HOM05D002103 ORTHO05D007890 4.4e-42 175.3 175 51.4
SGA_v2.0_scaffold62G21581 Striga asiatica HOM05D002103 ORTHO05D007890 2.2e-41 172.9 181 50.3
SGA_v2.0_scaffold168G38534 Striga asiatica HOM05D002103 ORTHO05D007890 3.8e-41 172.2 178 50.6
unitig_19.g30010 Utricularia gibba HOM05D002103 ORTHO05D007890 4.9e-41 171.8 176 50.0
unitig_8.g5018 Utricularia gibba HOM05D002103 ORTHO05D007890 4.9e-41 171.8 176 50.0
SGA_v2.0_scaffold208G41999 Striga asiatica HOM05D002103 ORTHO05D007890 1.9e-40 169.9 179 51.4
Lsat_1_v5_gn_1_20241 Lactuca sativa HOM05D002103 ORTHO05D007890 4.2e-40 168.7 181 50.3
SHI08293 Sapria himalayana HOM05D002103 ORTHO05D007890 1.2e-39 167.2 160 55.0
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 2.7e-39 166.0 160 53.1
HanXRQChr02g0037671 Helianthus annuus HOM05D002103 ORTHO05D007890 2.3e-38 162.9 165 52.1
FAN15G1587 Fragaria x ananassa HOM05D002103 ORTHO05D007890 8.7e-38 161.0 155 55.5
Os09g0460000 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D007890 1.9e-37 159.8 175 50.9
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.3e-36 157.1 153 54.2
CANSAT11G1050 Cannabis sativa HOM05D002103 ORTHO05D007890 1.4e-35 153.7 212 46.7
Medtr4g074580 Medicago truncatula HOM05D002103 ORTHO05D007890 1.4e-35 153.7 133 57.1
ATR0605G347 Amborella trichopoda HOM05D002103 ORTHO05D007890 5.8e-34 148.3 172 50.0
Zm00001eb315040 Zea mays HOM05D002103 ORTHO05D007890 7.6e-34 147.9 173 47.4
Psat7g173600 Pisum sativum HOM05D002103 ORTHO05D007890 4.9e-33 145.2 179 45.3
Actinidia22618 Actinidia chinensis HOM05D002103 ORTHO05D004020 5.4e-32 141.7 114 56.1
Os08g0474600 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D007890 3.5e-31 139.0 166 45.2
HPP92_016731 Vanilla planifolia HOM05D002103 ORTHO05D007890 1.3e-30 137.1 164 43.3
arahy.Tifrunner.gnm1.ann1.AI0I01 Arachis hypogaea HOM05D002103 ORTHO05D007890 3.9e-22 109.0 81 64.2
Pp3c18_17490 Physcomitrium patens HOM05D002103 ORTHO05D007890 8.7e-22 107.8 187 37.4
Aqoxy5G01267 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 3.1e-19 99.4 87 54.0
AagrBONN_evm.TU.Sc2ySwM_344.4853 Anthoceros agrestis HOM05D002103 ORTHO05D007890 9.0e-19 97.8 168 39.9
SEGI_04975 Sequoiadendron giganteum HOM05D002103 ORTHO05D007890 2.9e-17 92.8 188 33.0
Mapoly0103s0014 Marchantia polymorpha HOM05D002103 ORTHO05D007890 1.4e-16 90.5 226 31.9
CAN.G1335.15 Capsicum annuum HOM05D002103 ORTHO05D007890 1.6e-15 87.0 120 42.5
GSVIVG01018045001 Vitis vinifera HOM05D002103 ORTHO05D007890 1.4e-11 73.9 53 67.9
C02p42500 Brassica napus HOM05D002103 ORTHO05D007890 2.0e-10 70.1 73 49.3
MCO13G142 Micromonas commoda HOM05D002103 ORTHO05D007890 2.6e-10 69.7 186 28.5
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 3.8e-09 65.9 114 37.7
Aqoxy125s002 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 2.7e-07 59.7 42 71.4
Rhsim11G0093200 Rhododendron simsii HOM05D000175 ORTHO05D001341 2.7e-07 59.7 123 31.7
DCAR_029366 Daucus carota HOM05D000175 ORTHO05D001341 1.0e-06 57.8 92 33.7
SMO356G0239 Selaginella moellendorffii HOM05D000175 ORTHO05D000481 2.3e-06 56.6 68 42.6
BcaC09g49566 Brassica carinata HOM05D000175 ORTHO05D001341 3.0e-06 56.2 80 31.2
C01p35190 Brassica napus HOM05D000175 ORTHO05D001341 3.0e-06 56.2 80 31.2
BolC1t03478H Brassica oleracea HOM05D000175 ORTHO05D001341 3.0e-06 56.2 80 31.2
Lsat_1_v5_gn_5_191561 Lactuca sativa HOM05D000367 ORTHO05D004574 3.0e-06 56.2 85 40.0
THA.LOC104820698 Tarenaya hassleriana HOM05D000175 ORTHO05D001341 3.0e-06 56.2 80 35.0
Manes.12G112200 Manihot esculenta HOM05D006669 ORTHO05D008440 3.9e-06 55.8 79 40.5
VMungo1215G1356 Vigna mungo HOM05D004083 ORTHO05D005029 3.9e-06 55.8 127 33.1
QL03p018046 Quercus lobata HOM05D000175 ORTHO05D001341 5.1e-06 55.5 92 34.8
BcaB05g24846 Brassica carinata HOM05D004083 ORTHO05D005029 6.7e-06 55.1 81 43.2
C02p31810 Brassica napus HOM05D004083 ORTHO05D005029 6.7e-06 55.1 81 43.2
BraA02t06969Z Brassica rapa HOM05D004083 ORTHO05D005029 6.7e-06 55.1 81 43.2
Glyma.12G141301 Glycine max HOM05D002103 ORTHO05D007890 6.7e-06 55.1 47 57.4
Gohir.D03G027000 Gossypium hirsutum HOM05D006669 ORTHO05D008440 6.7e-06 55.1 152 28.3
Gorai.003G028700 Gossypium raimondii HOM05D006669 ORTHO05D008440 6.7e-06 55.1 152 28.3
Oeu053696.1 Olea europaea HOM05D000175 ORTHO05D001341 6.7e-06 55.1 106 30.2
Prupe.6G315800 Prunus persica HOM05D000175 ORTHO05D001341 6.7e-06 55.1 152 28.3
unitig_85.g27179 Utricularia gibba HOM05D000175 ORTHO05D004574 6.7e-06 55.1 82 40.2
ClCG01G017320 Citrullus lanatus HOM05D006669 ORTHO05D008440 8.8e-06 54.7 79 40.5
ECA248G0565 Erigeron canadensis HOM05D000367 ORTHO05D004574 8.8e-06 54.7 82 41.5
HanXRQChr10g0285401 Helianthus annuus HOM05D000367 ORTHO05D004574 8.8e-06 54.7 82 40.2
Phvul.003G185100 Phaseolus vulgaris HOM05D004083 ORTHO05D005029 8.8e-06 54.7 127 31.5
PGR083G1500 Punica granatum HOM05D000175 ORTHO05D001341 8.8e-06 54.7 92 34.8
Rhsim01G0289700 Rhododendron simsii HOM05D000367 ORTHO05D004574 8.8e-06 54.7 82 40.2
Rhsim09G0067100 Rhododendron simsii HOM05D000175 ORTHO05D001341 8.8e-06 54.7 95 35.8
vmacro15121 Vaccinium macrocarpon HOM05D000175 ORTHO05D004574 8.8e-06 54.7 82 40.2


User provided reference genes

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