Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 5.2e-107 391.0 186 100.0
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 4.9e-97 357.8 186 91.4
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 7.9e-79 297.4 180 77.8
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 1.3e-78 296.6 181 76.8
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.8e-78 296.2 180 77.2
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 2.3e-78 295.8 175 77.7
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 5.1e-78 294.7 157 84.7
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 8.7e-78 293.9 159 84.3
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 2.5e-77 292.4 176 79.5
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 3.3e-77 292.0 163 83.4
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 1.3e-76 290.0 185 71.9
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 1.6e-76 289.7 167 79.6
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 2.1e-76 289.3 176 77.8
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 2.8e-76 288.9 148 85.8
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 3.7e-76 288.5 203 69.0
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 4.8e-76 288.1 181 74.0
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 6.2e-76 287.7 149 85.2
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.1e-75 287.0 183 72.7
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 1.4e-75 286.6 152 83.6
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.8e-75 286.2 176 77.3
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 2.4e-75 285.8 183 73.8
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.4e-75 285.8 183 73.8
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 2.4e-75 285.8 153 83.7
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 2.4e-75 285.8 176 77.8
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 5.3e-75 284.6 183 73.8
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 9.0e-75 283.9 147 85.0
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 9.0e-75 283.9 147 85.0
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 9.0e-75 283.9 176 77.3
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.2e-74 283.5 161 77.6
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.2e-74 283.5 161 77.6
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 1.2e-74 283.5 150 84.0
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 1.5e-74 283.1 150 84.7
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 1.5e-74 283.1 150 84.7
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 2.0e-74 282.7 146 84.9
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 2.6e-74 282.3 144 86.1
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 2.6e-74 282.3 150 84.7
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 2.6e-74 282.3 190 71.1
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 3.4e-74 282.0 144 86.1
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 3.4e-74 282.0 156 82.7
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 4.5e-74 281.6 146 86.3
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 5.8e-74 281.2 186 72.0
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 7.6e-74 280.8 146 85.6
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 7.6e-74 280.8 176 73.9
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.0e-73 280.4 178 75.3
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 1.3e-73 280.0 182 73.1
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 1.7e-73 279.6 183 71.6
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 1.7e-73 279.6 177 76.3
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 1.7e-73 279.6 150 82.0
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 2.2e-73 279.3 180 72.2
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 2.9e-73 278.9 176 74.4
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 2.9e-73 278.9 181 71.8
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 2.9e-73 278.9 186 72.0
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 3.8e-73 278.5 150 83.3
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 3.8e-73 278.5 149 83.2
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 4.9e-73 278.1 178 74.2
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 4.9e-73 278.1 160 83.1
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 6.5e-73 277.7 186 71.5
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 8.4e-73 277.3 150 84.0
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 8.4e-73 277.3 185 70.3
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 1.4e-72 276.6 176 75.0
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 1.9e-72 276.2 162 77.2
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 3.2e-72 275.4 178 72.5
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 4.2e-72 275.0 164 78.7
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 4.2e-72 275.0 179 71.5
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 5.5e-72 274.6 192 68.8
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 9.3e-72 273.9 152 82.2
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 2.1e-71 272.7 183 71.6
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 2.1e-71 272.7 178 72.5
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 2.7e-71 272.3 165 76.4
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 2.7e-71 272.3 165 76.4
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 2.7e-71 272.3 165 76.4
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 2.7e-71 272.3 178 72.5
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 7.9e-71 270.8 145 82.8
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.3e-70 270.0 176 70.5
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 2.3e-70 269.2 180 71.1
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 3.0e-70 268.9 176 71.0
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 3.9e-70 268.5 181 70.2
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 3.9e-70 268.5 176 70.5
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.3e-68 263.5 142 81.7
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 1.3e-68 263.5 178 71.3
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 2.2e-68 262.7 156 74.4
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 2.8e-68 262.3 142 80.3
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.1e-67 260.4 141 78.7
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 2.4e-67 259.2 156 76.9
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 3.4e-66 255.4 162 72.2
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 7.7e-66 254.2 160 72.5
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 2.2e-65 252.7 119 96.6
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 7.2e-64 247.7 140 75.0
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 2.1e-63 246.1 140 73.6
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 4.6e-63 245.0 159 74.2
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 7.9e-63 244.2 173 64.7
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 1.8e-62 243.0 148 80.4
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 8.8e-62 240.7 185 61.6
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 1.1e-61 240.4 130 83.8
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 2.0e-61 239.6 161 71.4
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 2.0e-61 239.6 126 84.9
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 4.3e-61 238.4 124 87.1
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 1.3e-60 236.9 137 78.1
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.3e-60 236.9 162 69.1
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.5e-58 229.9 127 80.3
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 2.0e-58 229.6 140 75.7
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 2.2e-57 226.1 161 68.9
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 9.4e-56 220.7 140 67.9
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.4e-54 216.9 120 80.0
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 3.9e-54 215.3 142 73.2
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 3.9e-54 215.3 166 64.5
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 6.3e-52 208.0 173 62.4
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 2.0e-50 203.0 144 66.7
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 4.5e-50 201.8 112 83.0
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 5.2e-46 188.3 99 83.8
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 1.0e-41 174.1 180 51.1
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.3e-41 173.7 164 48.8
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 2.9e-41 172.6 148 52.0
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 3.8e-41 172.2 144 62.5
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 5.5e-40 168.3 144 55.6
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 9.4e-40 167.5 94 80.9
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 4.7e-39 165.2 87 85.1
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 3.0e-38 162.5 116 66.4
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 8.8e-38 161.0 180 47.8
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 6.3e-36 154.8 179 45.3
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 3.5e-34 149.1 165 47.3
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.5e-32 143.7 152 45.4
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.8e-30 136.7 72 86.1
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 1.8e-30 136.7 85 69.4
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 8.8e-30 134.4 157 49.0
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.7e-28 130.2 70 84.3
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 7.7e-26 121.3 145 44.1
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 1.0e-25 120.9 59 86.4
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 4.0e-22 109.0 118 45.8
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 2.0e-21 106.7 53 86.8
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 6.3e-20 101.7 182 37.9
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 2.3e-17 93.2 86 53.5
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 2.6e-13 79.7 111 42.3
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 6.4e-12 75.1 145 31.0
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 7.8e-10 68.2 31 90.3
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 1.7e-09 67.0 84 46.4
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 8.9e-06 54.7 64 43.8


User provided reference genes

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