Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G018680 Citrullus lanatus HOM05D004063 ORTHO05D005326 6.0e-152 540.8 271 100.0
MELO3C017019.2 Cucumis melo HOM05D004063 ORTHO05D005326 6.4e-130 467.6 271 88.6
CsaV3_4G037210 Cucumis sativus L. HOM05D004063 ORTHO05D005326 2.1e-128 462.6 271 87.1
Lalb_Chr16g0384201 Lupinus albus HOM05D004063 ORTHO05D005326 5.1e-119 431.4 270 80.7
Dinv05531 Davidia involucrata HOM05D004063 ORTHO05D005326 6.7e-119 431.0 269 80.3
Manes.10G039800 Manihot esculenta HOM05D004063 ORTHO05D005326 1.5e-118 429.9 271 80.4
Hma1.2p1_0157F.1_g069400 Hydrangea macrophylla HOM05D004063 ORTHO05D005326 5.6e-118 427.9 267 80.5
SalBow7G2995 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.6e-118 427.9 269 80.3
Lalb_Chr05g0218721 Lupinus albus HOM05D004063 ORTHO05D005326 7.4e-118 427.6 267 80.9
Psat7g118640 Pisum sativum HOM05D004063 ORTHO05D005326 1.3e-117 426.8 269 78.1
Phvul.003G057700 Phaseolus vulgaris HOM05D004063 ORTHO05D005326 1.6e-117 426.4 267 80.5
Glyma.13G171700 Glycine max HOM05D004063 ORTHO05D005326 2.1e-117 426.0 267 80.5
Thecc.08G059500 Theobroma cacao HOM05D004063 ORTHO05D005326 2.1e-117 426.0 269 80.7
Sp1g18280 Schrenkiella parvula HOM05D004063 ORTHO05D005326 3.7e-117 425.2 271 80.1
C07p22960 Brassica napus HOM05D004063 ORTHO05D005326 4.8e-117 424.9 276 80.4
Glyma.07G204400 Glycine max HOM05D004063 ORTHO05D005326 4.8e-117 424.9 267 80.1
HanXRQChr15g0492711 Helianthus annuus HOM05D004063 ORTHO05D005326 4.8e-117 424.9 271 79.0
BcaB07g32056 Brassica carinata HOM05D004063 ORTHO05D005326 6.2e-117 424.5 267 80.9
A07p15610 Brassica napus HOM05D004063 ORTHO05D005326 6.2e-117 424.5 267 80.9
Oeu000693.1 Olea europaea HOM05D004063 ORTHO05D005326 6.2e-117 424.5 270 79.3
COL.COLO4_38533 Corchorus olitorius HOM05D004063 ORTHO05D005326 8.1e-117 424.1 267 80.1
Gohir.A01G105500 Gossypium hirsutum HOM05D004063 ORTHO05D005326 8.1e-117 424.1 264 81.4
MSTRG.978 Avicennia marina HOM05D004063 ORTHO05D005326 1.1e-116 423.7 271 80.1
BolC7t42835H Brassica oleracea HOM05D004063 ORTHO05D005326 1.1e-116 423.7 272 80.1
Sabra02G0007700 Salix brachista HOM05D004063 ORTHO05D005326 1.1e-116 423.7 265 81.5
TPR.G34273 Trifolium pratense HOM05D004063 ORTHO05D005326 1.1e-116 423.7 267 79.0
Gorai.002G116900 Gossypium raimondii HOM05D004063 ORTHO05D005326 1.4e-116 423.3 264 81.1
Potri.002G010300 Populus trichocarpa HOM05D004063 ORTHO05D005326 1.4e-116 423.3 267 80.9
QL02p014238 Quercus lobata HOM05D004063 ORTHO05D005326 1.4e-116 423.3 266 80.8
Sabra05G0194100 Salix brachista HOM05D001348 ORTHO05D002788 1.4e-116 423.3 267 80.9
AL1G33510 Arabidopsis lyrata HOM05D004063 ORTHO05D005326 1.8e-116 422.9 270 80.0
Gohir.D02G100300 Gossypium hirsutum HOM05D004063 ORTHO05D005326 1.8e-116 422.9 269 79.9
TWI36G0802 Tripterygium wilfordii HOM05D004063 ORTHO05D005326 1.8e-116 422.9 269 79.9
Thhalv10008599m.g Eutrema salsugineum HOM05D004063 ORTHO05D005326 2.4e-116 422.5 265 81.1
Aqoxy5G01076 Aquilegia oxysepala HOM05D004063 ORTHO05D005326 3.1e-116 422.2 267 80.1
Haze_22784 Corylus avellana HOM05D004063 ORTHO05D005326 3.1e-116 422.2 265 81.1
Migut.C00386 Erythranthe guttata HOM05D004063 ORTHO05D005326 3.1e-116 422.2 270 79.3
GSVIVG01008672001 Vitis vinifera HOM05D004063 ORTHO05D005326 3.1e-116 422.2 263 81.4
Atru.chr13.138 Acer truncatum HOM05D004063 ORTHO05D005326 4.0e-116 421.8 266 80.5
CSS0047740 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 4.0e-116 421.8 269 78.4
BraA07t29300Z Brassica rapa HOM05D004063 ORTHO05D005326 5.3e-116 421.4 267 80.5
Cc00_g23370 Coffea canephora HOM05D004063 ORTHO05D005326 5.3e-116 421.4 269 78.4
Potri.005G250900 Populus trichocarpa HOM05D004063 ORTHO05D005326 5.3e-116 421.4 266 81.2
BcaC05g25963 Brassica carinata HOM05D004063 ORTHO05D005326 6.9e-116 421.0 276 80.1
C05p19140 Brassica napus HOM05D004063 ORTHO05D005326 6.9e-116 421.0 276 80.1
CAN.G311.117 Capsicum annuum HOM05D004063 ORTHO05D005326 6.9e-116 421.0 267 79.0
CiPaw.07G138500 Carya illinoinensis HOM05D004063 ORTHO05D005326 6.9e-116 421.0 264 80.3
Cfa000095 Carpinus fangiana HOM05D004063 ORTHO05D005326 9.0e-116 420.6 260 81.2
Gorai.005G113700 Gossypium raimondii HOM05D004063 ORTHO05D005326 9.0e-116 420.6 266 80.1
Prupe.5G135600 Prunus persica HOM05D004063 ORTHO05D005326 9.0e-116 420.6 264 80.7
SGA_v2.0_scaffold82G26227 Striga asiatica HOM05D004063 ORTHO05D005326 9.0e-116 420.6 266 79.7
AT1G20575 Arabidopsis thaliana HOM05D004063 ORTHO05D005326 1.2e-115 420.2 266 79.7
Gohir.A02G084400 Gossypium hirsutum HOM05D004063 ORTHO05D005326 1.2e-115 420.2 266 79.7
Gohir.D01G091800 Gossypium hirsutum HOM05D004063 ORTHO05D005326 1.2e-115 420.2 264 80.3
SalBow5G0233 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.2e-115 420.2 269 78.8
SalBow5G1556 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.2e-115 420.2 269 78.8
SalBow5G2247 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.2e-115 420.2 269 78.8
Peaxi162Scf00893g00009 Petunia axillaris HOM05D004063 ORTHO05D005326 1.5e-115 419.9 267 79.0
FvH4_5g10320 Fragaria vesca HOM05D004063 ORTHO05D005326 2.6e-115 419.1 267 80.1
FAN13G1863 Fragaria x ananassa HOM05D004063 ORTHO05D005326 2.6e-115 419.1 267 79.4
PSO063G2900 Papaver somniferum HOM05D004063 ORTHO05D005326 2.6e-115 419.1 267 77.2
PSO832G0952 Papaver somniferum HOM05D004063 ORTHO05D005326 2.6e-115 419.1 267 77.2
HanXRQChr05g0144881 Helianthus annuus HOM05D004063 ORTHO05D005326 3.4e-115 418.7 263 79.1
THA.LOC104809761 Tarenaya hassleriana HOM05D004063 ORTHO05D005326 3.4e-115 418.7 266 79.7
TPR.G16276 Trifolium pratense HOM05D004063 ORTHO05D005326 3.4e-115 418.7 267 77.9
Ca_26048_v3 Cicer arietinum L. HOM05D004063 ORTHO05D005326 4.5e-115 418.3 271 76.8
Eucgr.F01769 Eucalyptus grandis HOM05D004063 ORTHO05D005326 4.5e-115 418.3 263 80.2
FAN08G1355 Fragaria x ananassa HOM05D004063 ORTHO05D005326 4.5e-115 418.3 267 79.4
Oeu007480.1 Olea europaea HOM05D004063 ORTHO05D005326 4.5e-115 418.3 269 78.4
Sopen04g035990 Solanum pennellii HOM05D004063 ORTHO05D005326 4.5e-115 418.3 265 79.2
Duzib116G0298 Durio zibethinus HOM05D004063 ORTHO05D005326 5.8e-115 417.9 266 79.3
Solyc04g082390.3 Solanum lycopersicum HOM05D004063 ORTHO05D005326 5.8e-115 417.9 265 79.2
PGSC0003DMG400009980 Solanum tuberosum HOM05D004063 ORTHO05D005326 5.8e-115 417.9 265 79.2
DCAR_003678 Daucus carota HOM05D004063 ORTHO05D005326 7.6e-115 417.5 271 77.9
MD06G1125000 Malus domestica HOM05D004063 ORTHO05D005326 7.6e-115 417.5 264 79.9
CANSAT21G0854 Cannabis sativa HOM05D004063 ORTHO05D005326 9.9e-115 417.2 267 79.0
CARHR021040 Cardamine hirsuta HOM05D004063 ORTHO05D005326 9.9e-115 417.2 266 78.9
FAN18G2216 Fragaria x ananassa HOM05D004063 ORTHO05D005326 9.9e-115 417.2 267 79.4
Lj4g0024263 Lotus japonicus HOM05D004063 ORTHO05D005326 9.9e-115 417.2 267 78.3
Hund14546 Selenicereus undatus HOM05D004063 ORTHO05D005326 1.3e-114 416.8 267 77.9
Duzib093G1691 Durio zibethinus HOM05D004063 ORTHO05D005326 1.7e-114 416.4 268 79.5
RcHm_v2.0_Chr7g0187901 Rosa chinensis HOM05D004063 ORTHO05D005326 1.7e-114 416.4 267 79.4
BcaB03g14313 Brassica carinata HOM05D004063 ORTHO05D005326 2.9e-114 415.6 275 78.5
Actinidia37921 Actinidia chinensis HOM05D004063 ORTHO05D005326 3.8e-114 415.2 263 79.5
FAN04G0504 Fragaria x ananassa HOM05D004063 ORTHO05D005326 3.8e-114 415.2 267 79.0
Lsat_1_v5_gn_9_45181 Lactuca sativa HOM05D004063 ORTHO05D005326 8.4e-114 414.1 271 76.4
unitig_22.g5884 Utricularia gibba HOM05D004063 ORTHO05D005326 1.1e-113 413.7 267 77.9
arahy.Tifrunner.gnm1.ann1.YJK3BU Arachis hypogaea HOM05D004063 ORTHO05D005326 1.9e-113 412.9 270 77.4
Os03g0824400 Oryza sativa ssp. japonica HOM05D004063 ORTHO05D005326 2.4e-113 412.5 264 78.0
arahy.Tifrunner.gnm1.ann1.T45K83 Arachis hypogaea HOM05D004063 ORTHO05D005326 3.2e-113 412.1 267 77.9
ATR0693G211 Amborella trichopoda HOM05D004063 ORTHO05D005326 1.2e-112 410.2 264 76.9
AUR62039603 Chenopodium quinoa HOM05D004063 ORTHO05D005326 1.2e-112 410.2 266 76.3
PGR083G1742 Punica granatum HOM05D004063 ORTHO05D005326 2.1e-112 409.5 266 78.2
EL10Ac4g08397 Beta vulgaris HOM05D004063 ORTHO05D005326 2.7e-112 409.1 269 74.0
AUR62019619 Chenopodium quinoa HOM05D004063 ORTHO05D005326 3.5e-112 408.7 266 76.3
Ciclev10003501m.g Citrus clementina HOM05D004063 ORTHO05D005326 3.5e-112 408.7 272 77.2
Zm00001eb062940 Zea mays HOM05D004063 ORTHO05D005326 4.6e-112 408.3 271 76.0
Carub.0001s2006 Capsella rubella HOM05D004063 ORTHO05D005326 6.0e-112 407.9 272 76.8
arahy.Tifrunner.gnm1.ann1.G5WY8I Arachis hypogaea HOM05D001447 ORTHO05D005061 1.8e-111 406.4 263 77.6
HPP92_006203 Vanilla planifolia HOM05D004063 ORTHO05D005326 3.0e-111 405.6 265 76.6
Medtr4g087885 Medicago truncatula HOM05D004063 ORTHO05D005326 3.9e-111 405.2 299 70.2
vmacro17869 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 1.8e-108 396.4 286 71.3
RhsimUnG0172300 Rhododendron simsii HOM05D004063 ORTHO05D005326 4.5e-107 391.7 298 68.8
Cc02_g33840 Coffea canephora HOM05D004063 ORTHO05D005326 1.0e-106 390.6 269 74.7
MBI08_g37091_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 1.1e-105 387.1 266 74.1
CDE05G0316 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 8.7e-103 377.5 256 72.7
Nitab4.5_0000588g0070 Nicotiana tabacum HOM05D004063 ORTHO05D005326 5.7e-102 374.8 368 57.3
Lj4A11G65 Lonicera japonica HOM05D004063 ORTHO05D005326 2.8e-101 372.5 266 73.7
Haze_06929 Corylus avellana HOM05D004063 ORTHO05D005326 5.3e-100 368.2 231 80.5
Haze_06936 Corylus avellana HOM05D004063 ORTHO05D005326 5.3e-100 368.2 231 80.5
Medtr2g097220 Medicago truncatula HOM05D004063 ORTHO05D005326 5.9e-99 364.8 235 78.3
Rhsim01G0045200 Rhododendron simsii HOM05D004063 ORTHO05D005326 1.0e-98 364.0 235 77.9
BolC5t30614H Brassica oleracea HOM05D004063 ORTHO05D005326 5.0e-98 361.7 230 80.4
Pp3c13_6200 Physcomitrium patens HOM05D004063 ORTHO05D005326 1.4e-97 360.1 268 66.8
Mapoly0048s0015 Marchantia polymorpha HOM05D004063 ORTHO05D005326 3.2e-97 359.0 266 67.7
CDE05G0379 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 1.6e-96 356.7 269 68.4
Aa31LG7G4830 Aethionema arabicum HOM05D004063 ORTHO05D005326 6.7e-95 351.3 267 68.5
SMO147G0209 Selaginella moellendorffii HOM05D004063 ORTHO05D005326 3.3e-94 349.0 262 66.0
Sed0026987 Sechium edule HOM05D004063 ORTHO05D005326 1.7e-93 346.7 176 96.6
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 2.2e-93 346.3 235 74.5
TAR376G1187 Trochodendron aralioides HOM05D004063 ORTHO05D005326 2.2e-93 346.3 238 76.1
Nn6g31864 Nelumbo nucifera HOM05D004063 ORTHO05D005326 6.3e-93 344.7 243 72.4
SEGI_30145 Sequoiadendron giganteum HOM05D004063 ORTHO05D005326 1.4e-92 343.6 234 74.4
SalBow5G2049 Salvia bowleyana HOM05D004063 ORTHO05D005326 3.1e-92 342.4 257 70.0
CBR_g50625 Chara braunii HOM05D004063 ORTHO05D005326 4.1e-92 342.0 269 65.1
COL.COLO4_05219 Corchorus olitorius HOM05D004063 ORTHO05D005326 1.5e-91 340.1 250 72.4
CBR_g19920 Chara braunii HOM05D004063 ORTHO05D005326 1.3e-90 337.0 267 63.7
ECA232G2837 Erigeron canadensis HOM05D004063 ORTHO05D005326 3.8e-90 335.5 218 77.5
BraA06t24763Z Brassica rapa HOM05D004063 ORTHO05D005326 1.4e-89 333.6 231 75.3
Dinv31945 Davidia involucrata HOM05D004063 ORTHO05D005326 1.9e-89 333.2 176 91.5
arahy.Tifrunner.gnm1.ann1.T0MTDZ Arachis hypogaea HOM05D004063 ORTHO05D005326 3.7e-85 318.9 214 75.7
A06p16570 Brassica napus HOM05D004063 ORTHO05D005326 1.3e-82 310.5 272 65.1
Manes.12G151825 Manihot esculenta HOM05D004063 ORTHO05D005326 3.8e-82 308.9 214 73.8
CSS0027821 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 5.0e-82 308.5 266 63.2
MCO11G313 Micromonas commoda HOM05D004063 ORTHO05D005326 1.9e-81 306.6 265 61.1
Psat5g286640 Pisum sativum HOM05D004063 ORTHO05D005326 8.8e-79 297.7 192 76.6
Sc15g0004420 Simmondsia chinensis HOM05D004063 ORTHO05D005326 8.8e-79 297.7 194 76.3
PRCOL_00004250 Prasinoderma coloniale HOM05D004063 ORTHO05D005326 1.2e-75 287.3 264 57.6
Cfa026140 Carpinus fangiana HOM05D004063 ORTHO05D005326 1.6e-75 287.0 261 56.7
Cfa014082 Carpinus fangiana HOM05D004063 ORTHO05D005326 2.1e-72 276.6 192 72.9
SalBow5G0394 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.3e-69 267.3 297 55.9
Cre03.g150950 Chlamydomonas reinhardtii HOM05D004063 ORTHO05D005326 2.7e-67 259.6 267 49.8
Haze_27556 Corylus avellana HOM05D004063 ORTHO05D005326 6.3e-61 238.4 228 54.4
SalBow5G4311 Salvia bowleyana HOM05D004063 ORTHO05D005326 2.8e-56 223.0 244 54.9
Cpa.g.c43717 Carica papaya HOM05D004063 ORTHO05D005326 4.4e-54 215.7 111 93.7
MBI08_g41353_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 1.4e-52 210.7 145 75.2
arahy.Tifrunner.gnm1.ann1.Z2LGXF Arachis hypogaea HOM05D004063 ORTHO05D013367 7.3e-49 198.4 131 74.8
Rhsim06G0007000 Rhododendron simsii HOM05D004063 ORTHO05D005326 8.3e-45 184.9 185 56.2
arahy.Tifrunner.gnm1.ann1.ND9UIP Arachis hypogaea HOM05D004063 ORTHO05D013367 6.0e-43 178.7 131 70.2
arahy.Tifrunner.gnm1.ann1.SDYE8W Arachis hypogaea HOM05D004063 ORTHO05D013367 6.0e-43 178.7 131 70.2
arahy.Tifrunner.gnm1.ann1.RK3M4K Arachis hypogaea HOM05D004063 ORTHO05D001221 1.7e-42 177.2 131 69.5
SalBow5G3904 Salvia bowleyana HOM05D004063 ORTHO05D005326 4.3e-41 172.6 92 90.2
SalBow5G5369 Salvia bowleyana HOM05D004063 ORTHO05D005326 9.5e-41 171.4 132 67.4
vmacro04405 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 2.2e-37 160.2 96 80.2
arahy.Tifrunner.gnm1.ann1.T1UNZ1 Arachis hypogaea HOM05D004063 ORTHO05D005326 3.7e-37 159.5 127 68.5
arahy.Tifrunner.gnm1.ann1.N6YLHX Arachis hypogaea HOM05D004063 ORTHO05D005326 1.3e-34 151.0 90 78.9
AagrBONN_evm.TU.Sc2ySwM_117.93 Anthoceros agrestis HOM05D004063 ORTHO05D005326 6.8e-31 138.7 125 58.4
Cc07_g21180 Coffea canephora HOM05D004063 ORTHO05D005326 3.5e-27 126.3 73 84.9
arahy.Tifrunner.gnm1.ann1.WN1LH4 Arachis hypogaea HOM05D004063 ORTHO05D005326 1.7e-26 124.0 122 55.7
Cc07_g21130 Coffea canephora HOM05D004063 ORTHO05D005326 3.9e-26 122.9 107 61.7
Cpa.g.sc801.1 Carica papaya HOM05D004063 ORTHO05D005326 2.1e-24 117.1 65 86.2
Cc07_g21170 Coffea canephora HOM05D004063 ORTHO05D005326 7.6e-22 108.6 60 80.0
ATR0219G025 Amborella trichopoda HOM05D004063 ORTHO05D005326 1.7e-21 107.5 106 53.8
Rhsim13G0010800 Rhododendron simsii HOM05D000068 ORTHO05D000084 5.6e-17 92.4 84 57.1
SalBow5G1320 Salvia bowleyana HOM05D004063 ORTHO05D005326 3.2e-12 76.6 56 73.2
TAR381G0210 Trochodendron aralioides HOM05D004063 ORTHO05D005326 4.6e-11 72.8 148 40.5
arahy.Tifrunner.gnm1.ann1.PZHE2U Arachis hypogaea HOM05D004063 ORTHO05D005326 1.7e-10 70.9 115 44.3
SalBow5G1940 Salvia bowleyana HOM05D009895 ORTHO05D022408 3.6e-08 63.2 35 82.9
SalBow5G4685 Salvia bowleyana HOM05D009895 ORTHO05D022408 3.6e-08 63.2 35 82.9
Pp3c23_20720 Physcomitrium patens HOM05D004063 ORTHO05D038441 6.2e-08 62.4 279 26.2
Oeu037745.1 Olea europaea HOM05D004063 ORTHO05D005326 1.1e-07 61.6 37 75.7
AagrBONN_evm.TU.Sc2ySwM_228.1008 Anthoceros agrestis HOM05D004063 ORTHO05D038441 1.8e-07 60.8 277 25.3
SalBow5G2926 Salvia bowleyana HOM05D004063 ORTHO05D022408 9.0e-07 58.5 34 79.4
SalBow5G3951 Salvia bowleyana HOM05D004063 ORTHO05D022408 9.0e-07 58.5 34 79.4
SalBow5G4788 Salvia bowleyana HOM05D004063 ORTHO05D022408 9.0e-07 58.5 34 79.4
Cc07_g21160 Coffea canephora HOM05D004063 ORTHO05D022408 1.2e-06 58.2 34 76.5
HanXRQChr14g0457931 Helianthus annuus HOM05D004167 ORTHO05D005012 1.2e-06 58.2 272 21.3
CANSAT56G0736 Cannabis sativa HOM05D004167 ORTHO05D005012 1.5e-06 57.8 274 23.0
Lsat_1_v5_gn_2_119101 Lactuca sativa HOM05D004167 ORTHO05D005012 2.0e-06 57.4 265 21.5
Aqoxy5G03379 Aquilegia oxysepala HOM05D004167 ORTHO05D005012 2.6e-06 57.0 274 20.1
FAN10G4113 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.6e-06 57.0 268 22.0
Sed0027549 Sechium edule HOM05D004167 ORTHO05D005012 3.4e-06 56.6 267 22.5


User provided reference genes

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