Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 9.0e-156 553.5 274 100.0
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 1.5e-134 483.0 277 88.8
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 1.6e-133 479.6 277 87.7
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 1.7e-117 426.4 274 76.3
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 6.5e-114 414.5 277 75.8
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 3.6e-112 408.7 270 74.1
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.0e-111 407.1 276 73.9
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 2.3e-111 406.0 275 72.7
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 2.3e-111 406.0 270 73.3
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 1.2e-110 403.7 244 79.9
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 9.7e-110 400.6 278 73.4
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 9.7e-110 400.6 248 79.0
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 2.2e-109 399.4 274 72.3
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 2.2e-109 399.4 270 73.3
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 2.2e-109 399.4 271 71.6
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 3.7e-109 398.7 275 73.5
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 8.2e-109 397.5 279 71.7
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 3.1e-108 395.6 278 70.9
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 3.1e-108 395.6 276 71.7
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 4.1e-108 395.2 274 69.7
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 4.1e-108 395.2 276 68.8
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 4.1e-108 395.2 270 70.4
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 4.1e-108 395.2 270 72.2
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 5.3e-108 394.8 274 68.2
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 7.0e-108 394.4 270 70.7
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 7.0e-108 394.4 270 70.4
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 1.2e-107 393.7 274 69.7
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 1.2e-107 393.7 276 68.5
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 2.7e-107 392.5 279 72.0
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 2.7e-107 392.5 271 71.2
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 4.5e-107 391.7 273 71.1
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 2.9e-106 389.0 274 69.7
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 2.9e-106 389.0 276 69.6
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 2.9e-106 389.0 278 69.1
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 6.5e-106 387.9 276 69.9
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 8.5e-106 387.5 278 68.3
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 1.1e-105 387.1 270 71.1
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 7.2e-105 384.4 274 69.0
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 7.2e-105 384.4 269 70.3
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 7.2e-105 384.4 270 67.8
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 7.2e-105 384.4 278 66.9
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 9.4e-105 384.0 275 68.7
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 9.4e-105 384.0 276 69.2
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.6e-104 383.3 275 69.1
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 1.6e-104 383.3 278 66.5
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 2.1e-104 382.9 275 69.1
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 3.6e-104 382.1 270 67.8
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 3.6e-104 382.1 278 66.5
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 4.7e-104 381.7 275 67.3
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 8.0e-104 380.9 274 68.2
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 3.0e-103 379.0 281 69.0
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 6.8e-103 377.9 277 69.0
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 1.5e-102 376.7 274 68.6
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.0e-102 376.3 275 67.3
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 2.0e-102 376.3 274 67.5
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 2.6e-102 375.9 270 67.8
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 2.6e-102 375.9 275 66.9
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 2.6e-102 375.9 270 68.5
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.4e-102 375.2 276 67.4
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 4.4e-102 375.2 270 68.1
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 9.8e-102 374.0 279 65.2
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.3e-101 373.6 271 69.0
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 1.7e-101 373.2 271 66.8
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 2.2e-101 372.9 271 69.4
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 2.2e-101 372.9 277 67.1
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 2.2e-101 372.9 274 64.6
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 2.8e-101 372.5 275 67.6
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 3.7e-101 372.1 283 66.1
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 4.8e-101 371.7 271 64.9
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 4.8e-101 371.7 283 66.4
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 6.3e-101 371.3 280 66.8
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 1.1e-100 370.5 234 75.6
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 1.4e-100 370.2 278 65.5
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 1.8e-100 369.8 235 74.9
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 1.8e-100 369.8 274 68.2
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 1.8e-100 369.8 271 66.8
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 2.4e-100 369.4 274 63.9
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 3.1e-100 369.0 283 66.1
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 3.1e-100 369.0 249 71.9
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 9.1e-100 367.5 270 66.7
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 2.7e-99 365.9 275 66.9
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 4.5e-99 365.2 268 64.9
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 4.5e-99 365.2 268 64.9
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 4.5e-99 365.2 230 75.7
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 7.7e-99 364.4 273 63.7
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 1.0e-98 364.0 270 68.1
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 1.3e-98 363.6 270 66.7
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 1.7e-98 363.2 273 63.7
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 1.5e-97 360.1 272 62.9
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 3.2e-97 359.0 237 75.5
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 5.5e-97 358.2 234 70.9
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 5.5e-97 358.2 285 63.5
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 2.1e-96 356.3 289 63.3
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 6.1e-96 354.8 278 62.9
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 3.0e-95 352.4 285 59.3
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 3.0e-95 352.4 285 59.3
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 3.0e-95 352.4 278 62.9
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 6.8e-95 351.3 275 64.4
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 8.8e-95 350.9 230 72.2
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 1.2e-94 350.5 285 60.4
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 2.6e-94 349.4 278 62.9
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 3.4e-94 349.0 284 59.9
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 3.4e-94 349.0 278 62.9
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 3.4e-94 349.0 284 59.9
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 5.7e-94 348.2 301 59.5
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 5.7e-94 348.2 278 62.6
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 7.5e-94 347.8 278 62.6
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 7.5e-94 347.8 278 62.6
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 7.5e-94 347.8 282 60.3
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 7.5e-94 347.8 271 64.6
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 1.3e-93 347.1 279 62.4
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.3e-93 347.1 269 62.8
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 1.3e-93 347.1 278 61.9
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 1.7e-93 346.7 249 66.7
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.7e-93 346.7 285 59.3
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 1.7e-93 346.7 283 58.3
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 2.2e-93 346.3 278 61.2
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 2.2e-93 346.3 278 62.6
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 2.2e-93 346.3 284 59.2
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 2.2e-93 346.3 274 60.2
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 2.8e-93 345.9 285 59.3
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 2.8e-93 345.9 285 59.3
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 2.8e-93 345.9 278 61.9
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 2.8e-93 345.9 289 59.2
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 3.7e-93 345.5 285 59.3
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 3.7e-93 345.5 285 60.0
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 3.7e-93 345.5 283 61.1
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 8.3e-93 344.4 278 61.5
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 9.2e-92 340.9 293 57.7
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.2e-91 340.5 280 61.1
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 1.6e-91 340.1 272 64.7
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 2.0e-91 339.7 283 58.3
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 6.6e-90 334.7 275 60.4
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 8.6e-90 334.3 235 67.2
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 5.6e-89 331.6 276 59.1
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 1.2e-88 330.5 285 58.9
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 1.4e-87 327.0 272 60.3
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 8.9e-87 324.3 270 60.7
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.1e-84 317.4 244 66.4
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 9.2e-84 314.3 276 56.2
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 1.3e-82 310.5 233 64.8
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 2.5e-81 306.2 280 58.2
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.3e-81 305.4 274 58.8
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 4.1e-76 288.9 185 74.6
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 2.3e-74 283.1 234 60.7
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 3.0e-74 282.7 280 51.8
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 1.2e-72 277.3 232 56.0
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 2.1e-72 276.6 272 53.3
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 1.7e-69 266.9 198 64.1
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 1.0e-66 257.7 270 47.4
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 6.2e-64 248.4 213 56.3
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 2.9e-61 239.6 187 64.7
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 2.9e-61 239.6 235 48.1
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 1.6e-59 233.8 186 60.2
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 2.4e-55 219.9 283 40.3
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 6.9e-55 218.4 156 69.2
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.7e-50 203.8 154 66.2
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 2.5e-49 199.9 153 63.4
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.8e-45 186.0 214 47.7
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 2.1e-43 180.3 205 45.9
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.1e-43 180.3 176 55.7
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 5.6e-41 172.2 234 37.6
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 5.1e-34 149.1 133 57.9
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 8.7e-34 148.3 133 57.9
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 8.7e-34 148.3 133 57.9
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 3.4e-22 109.8 114 47.4
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-18 97.4 127 37.0
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 2.3e-18 97.1 176 31.8
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.9e-17 94.0 74 58.1


User provided reference genes

Program Settings