Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 2.5e-164 582.0 292 100.0
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 8.4e-160 567.0 292 97.3
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 1.1e-159 566.6 292 97.3
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 2.6e-153 545.4 292 92.5
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 2.5e-148 528.9 293 90.1
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 2.1e-134 482.6 298 82.2
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 6.0e-134 481.1 297 81.5
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 3.1e-130 468.8 295 79.0
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 5.9e-129 464.5 294 79.9
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 1.3e-128 463.4 292 80.1
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.7e-128 463.0 298 79.2
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 2.2e-128 462.6 295 79.7
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.9e-128 462.2 293 80.5
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 2.9e-128 462.2 293 80.5
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 5.0e-128 461.5 293 80.2
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.4e-127 459.9 293 80.5
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 1.9e-127 459.5 293 79.9
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.9e-127 459.5 293 78.2
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.5e-127 459.1 293 80.5
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 4.2e-127 458.4 293 79.2
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.2e-127 458.4 292 79.5
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 5.5e-127 458.0 299 78.6
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 7.2e-127 457.6 299 78.6
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.7e-126 455.7 293 79.9
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 3.6e-126 455.3 291 79.4
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.6e-126 455.3 292 79.1
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 7.9e-126 454.1 292 78.8
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.8e-125 453.0 292 78.8
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 2.3e-125 452.6 293 78.8
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.3e-125 452.6 293 78.8
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 8.7e-125 450.7 294 77.6
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.1e-124 450.3 292 78.4
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 9.7e-124 447.2 293 77.5
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 2.2e-123 446.0 293 77.5
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 3.7e-123 445.3 299 74.6
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 4.8e-123 444.9 299 74.2
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 4.8e-123 444.9 294 77.2
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.8e-122 443.0 293 75.8
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.4e-122 442.6 292 76.7
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.4e-122 442.6 292 76.7
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 2.4e-122 442.6 293 76.1
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 3.1e-122 442.2 292 76.4
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 4.1e-122 441.8 292 76.0
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 6.9e-122 441.0 292 75.7
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 6.9e-122 441.0 292 76.0
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.2e-121 440.3 292 76.0
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 1.2e-121 440.3 295 74.9
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 2.0e-121 439.5 293 76.5
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 3.4e-121 438.7 292 75.7
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 4.5e-121 438.3 292 75.7
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 4.5e-121 438.3 295 75.9
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 5.9e-121 438.0 292 75.3
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 5.9e-121 438.0 292 75.3
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 5.9e-121 438.0 292 75.3
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 5.9e-121 438.0 283 76.7
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 7.7e-121 437.6 300 75.0
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 7.7e-121 437.6 292 76.4
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 1.0e-120 437.2 292 75.3
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.0e-120 437.2 292 75.7
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.0e-120 437.2 290 75.9
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.3e-120 436.8 290 75.9
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 1.3e-120 436.8 290 75.9
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.7e-120 436.4 289 76.1
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 2.2e-120 436.0 290 75.5
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 3.8e-120 435.3 290 75.5
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 5.0e-120 434.9 300 75.3
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.4e-119 433.3 301 72.1
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 1.9e-119 433.0 290 75.2
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 5.5e-119 431.4 291 73.5
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 9.4e-119 430.6 292 76.0
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 1.6e-118 429.9 287 75.3
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 2.1e-118 429.5 294 73.8
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 2.1e-118 429.5 286 74.5
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 2.7e-118 429.1 294 73.5
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 2.7e-118 429.1 289 75.4
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.7e-118 429.1 290 74.5
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 2.7e-118 429.1 290 74.8
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 6.1e-118 427.9 296 74.7
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.8e-117 426.4 287 73.5
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 3.0e-117 425.6 294 74.8
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 3.0e-117 425.6 293 75.1
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 6.7e-117 424.5 296 74.3
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 8.8e-117 424.1 296 74.0
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 8.8e-117 424.1 296 74.0
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 2.6e-116 422.5 284 75.7
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 2.6e-116 422.5 294 73.5
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 7.4e-116 421.0 296 73.3
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 9.7e-116 420.6 290 73.4
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 1.7e-115 419.9 294 73.5
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 1.7e-115 419.9 290 74.5
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 1.7e-115 419.9 287 72.8
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 2.2e-115 419.5 284 75.0
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 2.2e-115 419.5 290 74.8
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 2.2e-115 419.5 287 72.8
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 2.2e-115 419.5 287 72.8
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 3.7e-115 418.7 284 74.6
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 3.7e-115 418.7 277 76.2
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 3.7e-115 418.7 286 72.7
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 4.8e-115 418.3 290 73.8
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 6.3e-115 417.9 291 73.2
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 8.2e-115 417.5 296 73.0
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 1.8e-114 416.4 292 72.3
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 2.4e-114 416.0 287 72.8
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 3.1e-114 415.6 292 72.3
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 6.9e-114 414.5 295 72.2
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 9.1e-114 414.1 292 72.3
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 1.5e-113 413.3 289 72.3
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 2.6e-113 412.5 283 72.8
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.0e-112 410.6 293 73.4
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 2.9e-112 409.1 294 73.1
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 3.8e-112 408.7 290 73.1
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 1.4e-111 406.8 282 73.4
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 3.2e-111 405.6 282 73.8
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 7.2e-111 404.4 284 73.2
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 1.2e-110 403.7 293 70.6
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 1.8e-109 399.8 293 68.3
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 2.3e-109 399.4 294 69.7
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 3.0e-109 399.1 283 72.8
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 6.7e-109 397.9 294 69.4
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 1.1e-108 397.1 283 69.3
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 1.3e-107 393.7 293 67.9
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 1.8e-106 389.8 282 69.5
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.4e-106 389.4 290 70.7
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 3.1e-106 389.0 297 69.7
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 2.0e-105 386.3 289 68.9
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 1.3e-104 383.6 297 69.0
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 8.5e-104 380.9 289 68.9
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.7e-102 375.9 273 70.3
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 5.2e-101 371.7 297 67.0
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 4.4e-100 368.6 294 67.3
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 5.7e-100 368.2 287 64.1
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 6.3e-99 364.8 292 65.1
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 8.2e-99 364.4 302 64.2
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 8.2e-99 364.4 288 64.9
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 2.4e-98 362.8 297 66.0
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 3.1e-98 362.5 297 66.3
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 6.5e-96 354.8 291 64.9
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.5e-95 353.6 301 62.5
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 4.2e-95 352.1 301 62.5
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 5.5e-95 351.7 297 63.6
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 1.4e-93 347.1 301 61.5
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 4.1e-90 335.5 260 65.8
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.5e-87 326.2 245 68.6
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 3.0e-85 319.3 293 59.7
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 7.3e-79 298.1 278 56.5
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.6e-76 289.7 216 71.3
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 3.0e-72 276.2 192 74.5
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 3.3e-71 272.7 266 55.6
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 3.6e-70 269.2 279 52.7
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 1.6e-62 243.8 269 53.5
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 1.4e-61 240.7 284 50.7
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 4.0e-61 239.2 143 81.1
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 1.2e-57 227.6 280 45.7
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 1.4e-53 214.2 152 71.7
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 7.6e-52 208.4 163 68.1
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.7e-48 197.2 128 73.4
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 1.1e-45 188.0 142 68.3
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 2.4e-29 133.7 111 64.9
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 1.5e-28 131.0 88 75.0
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 6.4e-27 125.6 111 62.2
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 8.4e-27 125.2 102 60.8
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 2.1e-25 120.6 332 30.1
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 7.4e-23 112.1 101 62.4
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 1.5e-15 87.8 73 60.3
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 2.4e-13 80.5 90 56.7
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 7.6e-12 75.5 74 59.5
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 9.7e-07 58.5 153 32.0
A08p28200 Brassica napus HOM05D005748 ORTHO05D007123 4.8e-06 56.2 135 33.3
BraA08t34751Z Brassica rapa HOM05D005748 ORTHO05D007123 4.8e-06 56.2 135 33.3
SHI26932 Sapria himalayana HOM05D009124 ORTHO05D012381 4.8e-06 56.2 82 43.9
TWI18G0424 Tripterygium wilfordii HOM05D005748 ORTHO05D007123 6.3e-06 55.8 152 30.3
MD16G1097300 Malus domestica HOM05D005748 ORTHO05D007123 8.2e-06 55.5 152 28.9


User provided reference genes

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