Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 2751.9 1362 100.0
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 2358.9 1318 90.1
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 2137.5 1229 87.1
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1983.0 1332 75.3
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1977.2 1328 74.8
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1975.7 1327 74.5
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1975.7 1328 75.1
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1973.7 1327 74.5
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1966.4 1330 74.7
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1964.9 1329 74.6
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1955.3 1326 74.1
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1953.3 1329 73.9
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1952.2 1336 73.4
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1950.6 1329 74.4
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1939.1 1327 73.9
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1937.5 1325 73.2
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1934.8 1325 73.2
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1934.8 1327 72.9
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1933.7 1320 73.9
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1931.0 1328 73.2
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1930.6 1335 72.6
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1928.7 1336 73.4
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1928.3 1329 73.0
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1928.3 1329 73.4
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1923.3 1334 72.3
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1919.8 1336 72.4
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1919.4 1330 72.9
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1917.1 1320 73.3
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1917.1 1320 73.3
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1916.0 1320 73.3
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1915.6 1320 73.3
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1911.3 1328 72.1
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1909.4 1368 70.5
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1909.0 1328 73.9
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1900.6 1320 71.7
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1899.4 1325 72.5
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1893.6 1322 72.0
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1890.2 1326 72.0
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1887.8 1325 71.8
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1879.0 1322 71.7
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1875.5 1328 71.5
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1868.2 1341 70.7
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1865.1 1344 70.2
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1863.6 1344 70.2
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1862.4 1587 63.3
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1861.3 1326 70.5
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1858.6 1324 70.8
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1854.0 1339 70.0
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1848.6 1359 68.8
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1844.3 1326 70.0
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1842.0 1326 69.3
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1841.6 1327 69.6
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1840.5 1326 69.8
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1839.7 1326 70.2
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1837.8 1325 70.9
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1832.4 1327 69.3
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1832.0 1326 69.6
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1830.1 1326 69.5
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1828.5 1328 69.3
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1827.4 1327 69.6
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1825.4 1312 70.5
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1823.5 1325 68.9
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1821.2 1326 69.3
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1819.3 1327 68.8
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1818.9 1326 69.5
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1816.6 1329 69.1
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1815.8 1331 68.1
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1815.4 1326 68.9
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1811.6 1326 68.8
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1809.7 1327 68.6
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1809.7 1327 68.7
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1809.3 1338 68.3
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1809.3 1327 68.4
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1809.3 1325 69.7
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1808.9 1328 68.6
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1805.4 1328 68.6
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1804.3 1326 68.6
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1803.9 1333 68.2
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1803.5 1326 69.4
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1801.9 1326 68.6
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1797.3 1327 68.5
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1795.0 1329 68.5
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1794.6 1330 68.3
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1790.4 1327 68.2
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1783.8 1328 68.1
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1771.9 1311 68.3
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1770.4 1228 72.1
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1749.2 1339 67.7
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1731.8 1390 64.2
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1713.0 1302 66.9
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1671.0 1331 64.2
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1670.2 1327 63.0
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1601.6 1107 72.9
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1587.0 1165 68.8
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1571.2 1306 60.9
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1558.5 1146 68.4
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1536.5 1129 70.1
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1535.8 1066 72.8
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1511.5 1323 58.3
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1494.9 1102 68.3
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1484.9 1135 66.9
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1476.8 839 88.7
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1438.3 1177 64.8
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1408.3 1001 71.3
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1396.3 1089 65.6
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1327.0 924 72.9
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1255.0 1459 47.4
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1156.4 1439 45.2
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1116.3 1324 48.3
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 0.0e+00 1077.8 932 60.5
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 4.6e-301 1038.5 814 64.1
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 1.1e-289 1000.7 1085 51.9
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 3.4e-280 969.1 1221 44.6
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 5.7e-259 898.7 664 69.9
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.0e-244 851.3 541 78.2
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 1.4e-236 824.3 945 50.7
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 1.4e-204 718.0 1506 32.0
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 1.9e-198 697.6 442 79.2
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 3.2e-185 653.7 455 70.1
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 5.8e-163 579.7 489 60.5
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 2.7e-144 517.7 302 84.1
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 2.0e-115 421.8 325 64.9
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 1.7e-98 365.5 214 84.1
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.3e-93 349.4 320 58.4
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.0e-90 339.7 385 48.6
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 1.2e-86 326.2 255 62.4
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 3.0e-82 311.6 197 82.2
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 8.6e-82 310.1 224 69.2
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 1.1e-79 303.1 220 68.6
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.2e-76 291.6 265 57.4
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 9.2e-76 290.0 190 74.2
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 4.7e-72 277.7 259 55.2
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 4.7e-72 277.7 259 55.2
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 4.7e-72 277.7 259 55.2
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 2.0e-70 272.3 168 81.5
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 3.7e-69 268.1 151 85.4
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 1.1e-68 266.5 180 70.6
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.9e-65 255.8 444 34.7
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 3.3e-65 255.0 155 81.9
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 7.6e-62 243.8 162 74.7
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.5e-57 229.6 155 71.6
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.9e-53 215.3 138 73.9
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.0e-46 192.6 137 66.4
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 2.4e-44 185.7 149 59.7
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.3e-42 179.1 110 79.1
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 8.7e-42 177.2 131 66.4
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.1e-41 176.8 121 71.9
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 7.4e-41 174.1 110 76.4
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.4e-39 169.9 110 75.5
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.4e-39 169.9 110 75.5
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.2e-38 166.8 98 86.7
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.2e-38 166.8 110 75.5
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.5e-38 166.4 224 45.1
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.1e-31 143.7 80 81.2
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 6.9e-31 141.0 77 81.8
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 2.0e-30 139.4 95 71.6
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.9e-29 135.6 81 76.5
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.2e-27 130.2 87 67.8
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 6.1e-27 127.9 81 75.3
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 7.4e-25 120.9 65 86.2
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 3.4e-22 112.1 102 60.8
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 3.6e-19 102.1 83 57.8
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 4.6e-19 101.7 196 36.2
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 7.9e-19 100.9 61 82.0
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 1.5e-17 96.7 83 55.4
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 8.2e-16 90.9 81 58.0
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.3e-15 88.2 52 76.9
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 1.5e-14 86.7 172 33.1
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 1.1e-12 80.5 99 46.5
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.5e-12 79.3 75 50.7
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 3.6e-11 75.5 45 77.8
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 5.7e-09 68.2 400 22.2
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 1.1e-07 63.9 52 63.5
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 4.5e-06 58.5 129 31.8
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 7.7e-06 57.8 353 23.2
SEGI_32398 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 7.7e-06 57.8 65 47.7


User provided reference genes

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