Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G017870 Citrullus lanatus HOM05D007892 ORTHO05D009211 1.7e-292 1008.8 532 100.0
MELO3C025606.2 Cucumis melo HOM05D007892 ORTHO05D009211 7.2e-214 747.7 521 79.8
CsaV3_4G033500 Cucumis sativus L. HOM05D007892 ORTHO05D009211 2.3e-196 689.5 535 73.6
Sed0012696 Sechium edule HOM05D007892 ORTHO05D009211 6.0e-160 568.5 482 69.1
Sed0010274 Sechium edule HOM05D007892 ORTHO05D009211 7.3e-49 199.5 189 60.3
Dinv20199 Davidia involucrata HOM05D007892 ORTHO05D009211 1.8e-47 194.9 548 35.2
MD03G1231500 Malus domestica HOM05D007892 ORTHO05D009211 2.9e-45 187.6 511 37.0
Prupe.4G176400 Prunus persica HOM05D007892 ORTHO05D009211 3.2e-44 184.1 509 36.3
Cfa020559 Carpinus fangiana HOM05D007892 ORTHO05D009211 1.7e-42 178.3 533 36.8
CANSAT56G4073 Cannabis sativa HOM05D007892 ORTHO05D009211 3.0e-42 177.6 502 37.1
CiPaw.11G172000 Carya illinoinensis HOM05D007892 ORTHO05D009211 2.1e-40 171.4 561 33.9
FvH4_3g19480 Fragaria vesca HOM05D007892 ORTHO05D009211 4.7e-40 170.2 516 35.1
GSVIVG01014294001 Vitis vinifera HOM05D007892 ORTHO05D009211 3.1e-39 167.5 564 35.6
Eucgr.F01161 Eucalyptus grandis HOM05D007892 ORTHO05D009211 2.0e-38 164.9 553 32.4
FAN25G2763 Fragaria x ananassa HOM05D007892 ORTHO05D009211 5.8e-38 163.3 575 34.1
FAN11G1893 Fragaria x ananassa HOM05D007892 ORTHO05D009211 1.3e-37 162.2 515 34.0
FAN21G3246 Fragaria x ananassa HOM05D007892 ORTHO05D009211 2.2e-37 161.4 573 33.3
TWI38G1391 Tripterygium wilfordii HOM05D007892 ORTHO05D009211 2.2e-37 161.4 549 34.1
Haze_09454 Corylus avellana HOM05D007892 ORTHO05D009211 5.4e-36 156.8 525 34.1
Glyma.12G226900 Glycine max HOM05D007892 ORTHO05D009211 9.2e-36 156.0 545 32.1
Duzib213G0678 Durio zibethinus HOM05D007892 ORTHO05D009211 2.5e-33 147.9 630 32.4
FAN16G1540 Fragaria x ananassa HOM05D007892 ORTHO05D009211 7.3e-33 146.4 573 33.0
Thecc.07G095700 Theobroma cacao HOM05D007892 ORTHO05D009211 1.2e-32 145.6 554 32.7
TAR626G1218 Trochodendron aralioides HOM05D007892 ORTHO05D009211 1.2e-32 145.6 580 32.8
RcHm_v2.0_Chr5g0032741 Rosa chinensis HOM05D007892 ORTHO05D009211 1.1e-31 142.5 407 33.7
MD11G1252600 Malus domestica HOM05D007892 ORTHO05D009211 3.4e-30 137.5 540 31.1
Ca_03530_v3 Cicer arietinum L. HOM05D007892 ORTHO05D009211 1.3e-29 135.6 629 30.2
CSS0005747 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 1.7e-29 135.2 500 32.8
CSS0030192 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 2.2e-29 134.8 500 32.8
Lj3g0007189 Lotus japonicus HOM05D007892 ORTHO05D009211 3.8e-29 134.0 569 32.0
Gorai.002G067800 Gossypium raimondii HOM05D007892 ORTHO05D009211 4.9e-29 133.7 586 31.1
Gohir.D01G048000 Gossypium hirsutum HOM05D007892 ORTHO05D009211 3.2e-28 131.0 533 31.3
COL.COLO4_36713 Corchorus olitorius HOM05D007892 ORTHO05D009211 7.1e-28 129.8 611 31.8
Dinv14936 Davidia involucrata HOM05D007892 ORTHO05D009211 4.6e-27 127.1 533 31.9
QL08p022727 Quercus lobata HOM05D007892 ORTHO05D009211 1.0e-26 125.9 611 29.8
Ciclev10007798m.g Citrus clementina HOM05D007892 ORTHO05D009211 2.3e-26 124.8 537 30.7
Lalb_Chr01g0016751 Lupinus albus HOM05D007892 ORTHO05D009211 2.3e-26 124.8 619 31.0
Duzib268G0896 Durio zibethinus HOM05D007892 ORTHO05D009211 5.1e-26 123.6 658 28.4
Rhsim06G0202400 Rhododendron simsii HOM05D007892 ORTHO05D009211 8.7e-26 122.9 492 30.5
Medtr2g078660 Medicago truncatula HOM05D007892 ORTHO05D009211 1.9e-25 121.7 499 29.9
Manes.15G089300 Manihot esculenta HOM05D007892 ORTHO05D009211 9.6e-25 119.4 564 29.8
Potri.011G115900 Populus trichocarpa HOM05D007892 ORTHO05D009211 1.2e-24 119.0 584 28.3
VMungo0331G1677 Vigna mungo HOM05D007892 ORTHO05D009211 6.2e-24 116.7 552 29.9
Duzib244G0002 Durio zibethinus HOM05D007892 ORTHO05D009211 1.7e-21 108.6 663 29.6
Glyma.13G273900 Glycine max HOM05D007892 ORTHO05D009211 6.4e-21 106.7 534 27.7
Potri.001G397001 Populus trichocarpa HOM05D007892 ORTHO05D009211 1.4e-20 105.5 548 29.4
Phvul.010G112300 Phaseolus vulgaris HOM05D007892 ORTHO05D009211 1.9e-20 105.1 495 30.1
Cc05_g11770 Coffea canephora HOM05D007892 ORTHO05D009211 4.2e-20 104.0 527 29.0
Solyc07g062920.4 Solanum lycopersicum HOM05D021138 ORTHO05D009211 4.2e-20 104.0 584 27.6
Gohir.A01G061400 Gossypium hirsutum HOM05D007892 ORTHO05D009211 3.5e-19 100.9 577 28.1
Sopen07g031110 Solanum pennellii HOM05D021138 ORTHO05D009211 4.6e-19 100.5 565 28.0
AUR62019468 Chenopodium quinoa HOM05D007892 ORTHO05D009211 7.8e-19 99.8 455 31.2
HanXRQChr11g0351991 Helianthus annuus HOM05D007892 ORTHO05D009211 3.0e-18 97.8 485 29.9
PGSC0003DMG403012406 Solanum tuberosum HOM05D021138 ORTHO05D009211 3.0e-18 97.8 585 27.4
arahy.Tifrunner.gnm1.ann1.8Q202K Arachis hypogaea HOM05D007892 ORTHO05D009211 3.9e-18 97.4 577 27.7
vmacro11887 Vaccinium macrocarpon HOM05D007892 ORTHO05D009211 1.5e-17 95.5 486 30.5
Oeu037370.2 Olea europaea HOM05D007892 ORTHO05D009211 3.3e-17 94.4 499 27.5
Psat0s3104g0160 Pisum sativum HOM05D007892 ORTHO05D009211 4.3e-17 94.0 482 28.0
Nn1g06449 Nelumbo nucifera HOM05D007892 ORTHO05D009211 7.3e-17 93.2 522 28.7
Sabra11G0101600 Salix brachista HOM05D007892 ORTHO05D009211 3.6e-16 90.9 642 26.6
AUR62036164 Chenopodium quinoa HOM05D007892 ORTHO05D009211 2.4e-15 88.2 456 27.0
MSTRG.6820 Avicennia marina HOM05D007892 ORTHO05D009211 4.5e-14 84.0 457 28.7
TPR.G7948 Trifolium pratense HOM05D007892 ORTHO05D009211 2.9e-13 81.3 62 69.4
A02p10690 Brassica napus HOM05D012500 ORTHO05D009211 1.1e-12 79.3 285 29.5
DCAR_019569 Daucus carota HOM05D007892 ORTHO05D009211 2.4e-12 78.2 458 27.3
Sc03g0010140 Simmondsia chinensis HOM05D007892 ORTHO05D009211 4.2e-12 77.4 472 27.1
ATR0150G007 Amborella trichopoda HOM05D007892 ORTHO05D009211 7.1e-12 76.6 513 26.3
Ah.06g184550 Amaranthus hybridus HOM05D007892 ORTHO05D009211 9.3e-12 76.3 474 28.5
BraA02t06132Z Brassica rapa HOM05D012500 ORTHO05D009211 9.3e-12 76.3 285 29.1
Lsat_1_v5_gn_7_104640 Lactuca sativa HOM05D007892 ORTHO05D009211 2.1e-11 75.1 217 32.7
Hund22811 Selenicereus undatus HOM05D007892 ORTHO05D009211 4.6e-11 73.9 548 27.2
C02p17810 Brassica napus HOM05D012500 ORTHO05D009211 6.0e-11 73.6 343 26.5
CDE05G2993 Ceratophyllum demersum HOM05D007892 ORTHO05D009211 7.9e-11 73.2 204 34.3
Sp6g16010 Schrenkiella parvula HOM05D012500 ORTHO05D009211 7.9e-11 73.2 477 27.0
Nitab4.5_0002330g0130 Nicotiana tabacum HOM05D021138 ORTHO05D009211 1.8e-10 72.0 543 28.4
BcaC03g14367 Brassica carinata HOM05D012500 ORTHO05D009211 3.9e-10 70.9 438 26.5
BolC2t07910H Brassica oleracea HOM05D012500 ORTHO05D009211 5.1e-10 70.5 343 26.2
THA.LOC104799933 Tarenaya hassleriana HOM05D012500 ORTHO05D009211 8.7e-10 69.7 366 27.6
Migut.M00782 Erythranthe guttata HOM05D007892 ORTHO05D009211 1.5e-09 68.9 535 26.4
EL10Ac4g08232 Beta vulgaris HOM05D007892 ORTHO05D009211 1.3e-08 65.9 463 27.9
Actinidia09702 Actinidia chinensis HOM05D007892 ORTHO05D009211 2.8e-08 64.7 478 26.8
arahy.Tifrunner.gnm1.ann1.N2Q107 Arachis hypogaea HOM05D007892 ORTHO05D009211 2.8e-08 64.7 180 32.2
Carub.0008s1424 Capsella rubella HOM05D012500 ORTHO05D009211 6.2e-08 63.5 467 27.0
unitig_37.g12567 Utricularia gibba HOM05D007892 ORTHO05D009211 6.2e-08 63.5 514 25.9
PSO675G5502 Papaver somniferum HOM05D056025 ORTHO05D009211 1.1e-07 62.8 167 38.3
AT5G53930 Arabidopsis thaliana HOM05D012500 ORTHO05D009211 2.4e-07 61.6 477 26.2
Lj1A840G45 Lonicera japonica HOM05D007892 ORTHO05D009211 2.4e-07 61.6 542 27.3
Os07g0107900 Oryza sativa ssp. japonica HOM05D061528 ORTHO05D009211 6.9e-07 60.1 356 29.2
AL8G29040 Arabidopsis lyrata HOM05D012500 ORTHO05D009211 2.6e-06 58.2 465 24.1
Aqoxy1G02331 Aquilegia oxysepala HOM05D007892 ORTHO05D009211 5.8e-06 57.0 654 24.6
Nitab4.5_0005017g0030 Nicotiana tabacum HOM05D021138 ORTHO05D009211 5.8e-06 57.0 542 25.3


User provided reference genes

Program Settings