Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 7.9e-119 430.6 246 100.0
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 4.1e-99 365.2 247 79.8
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 9.4e-80 300.8 246 67.9
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 1.1e-56 224.2 181 75.1
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 7.1e-43 178.3 242 46.3
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 9.2e-43 177.9 241 46.9
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 2.1e-42 176.8 254 47.6
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 3.0e-41 172.9 234 46.6
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 7.3e-40 168.3 220 47.7
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 7.3e-40 168.3 252 45.6
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 9.5e-40 167.9 248 45.6
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 1.2e-39 167.5 241 45.6
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 1.6e-39 167.2 248 45.2
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 1.6e-39 167.2 199 47.7
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 4.0e-38 162.5 247 43.7
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 8.9e-38 161.4 198 48.0
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 1.2e-37 161.0 241 44.4
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 1.2e-37 161.0 248 44.0
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 1.5e-37 160.6 192 49.0
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 2.6e-37 159.8 235 43.4
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 3.4e-37 159.5 241 43.6
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 4.4e-37 159.1 243 43.6
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 7.6e-37 158.3 234 43.6
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 9.9e-37 157.9 241 42.7
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 1.3e-36 157.5 199 49.7
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 1.3e-36 157.5 276 42.0
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 2.2e-36 156.8 241 42.3
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 2.2e-36 156.8 234 44.0
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 2.9e-36 156.4 238 43.7
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 6.4e-36 155.2 243 45.3
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 6.4e-36 155.2 198 46.0
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 1.1e-35 154.5 237 43.9
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 2.4e-35 153.3 238 42.9
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 9.2e-35 151.4 199 49.2
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 9.2e-35 151.4 238 44.5
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 2.1e-34 150.2 201 45.3
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 2.1e-34 150.2 242 43.8
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 4.6e-34 149.1 241 41.5
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 2.3e-33 146.7 233 41.2
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 3.0e-33 146.4 175 51.4
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 3.0e-33 146.4 255 41.2
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 3.0e-33 146.4 292 38.0
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 3.0e-33 146.4 253 44.3
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 5.1e-33 145.6 240 41.7
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 6.6e-33 145.2 243 42.8
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 8.6e-33 144.8 240 39.2
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 8.6e-33 144.8 240 39.2
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 1.1e-32 144.4 152 48.7
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.9e-32 143.7 198 42.4
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 2.5e-32 143.3 233 45.1
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 3.3e-32 142.9 260 40.0
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 1.2e-31 141.0 186 46.2
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 1.2e-31 141.0 218 43.6
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 1.6e-31 140.6 187 43.9
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 2.1e-31 140.2 256 39.1
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 2.1e-31 140.2 207 40.1
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 2.8e-31 139.8 199 47.7
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 4.7e-31 139.0 243 42.0
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 6.2e-31 138.7 149 47.7
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 6.2e-31 138.7 195 45.1
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 8.1e-31 138.3 241 42.7
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 1.1e-30 137.9 238 40.8
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 1.4e-30 137.5 187 44.4
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 2.4e-30 136.7 195 44.6
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 4.0e-30 136.0 241 44.0
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 5.2e-30 135.6 199 46.7
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 1.5e-29 134.0 183 41.5
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 4.4e-29 132.5 197 44.7
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 4.4e-29 132.5 294 36.7
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 1.3e-28 131.0 248 37.9
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.3e-28 131.0 190 45.8
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 1.7e-28 130.6 239 41.4
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 6.4e-28 128.6 247 37.2
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 6.4e-28 128.6 235 37.4
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 1.1e-27 127.9 196 46.4
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.4e-27 127.5 233 37.3
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.9e-27 127.1 235 36.6
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 5.4e-27 125.6 236 39.8
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 7.1e-27 125.2 237 38.8
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 4.6e-26 122.5 242 36.8
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 7.8e-26 121.7 232 38.8
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 3.0e-25 119.8 242 36.4
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 3.0e-25 119.8 196 38.8
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 5.1e-25 119.0 238 38.2
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 1.9e-24 117.1 186 39.2
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 4.3e-24 115.9 250 38.0
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 1.6e-23 114.0 185 37.3
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 8.1e-23 111.7 188 38.3
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 1.8e-22 110.5 228 36.8
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 3.1e-22 109.8 179 36.9
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 3.1e-22 109.8 232 34.5
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 4.0e-22 109.4 237 36.7
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 9.0e-22 108.2 232 36.6
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 9.0e-22 108.2 179 36.3
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 9.0e-22 108.2 179 36.3
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 2.6e-21 106.7 146 40.4
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 2.6e-21 106.7 240 36.7
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 4.5e-21 105.9 179 35.8
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 4.5e-21 105.9 156 37.2
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 5.8e-21 105.5 237 36.7
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 5.8e-21 105.5 237 35.4
CSS0033783 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 9.9e-21 104.8 181 44.2
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 2.9e-20 103.2 180 36.1
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 2.9e-20 103.2 254 32.7
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 1.1e-19 101.3 232 35.3
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 3.2e-19 99.8 237 41.8
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 5.4e-19 99.0 243 34.2
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 5.4e-19 99.0 240 34.6
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 9.3e-19 98.2 238 34.9
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 3.5e-18 96.3 78 55.1
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 7.9e-18 95.1 194 37.1
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 3.9e-17 92.8 89 50.6
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 6.7e-17 92.0 157 36.3
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 5.6e-16 89.0 91 45.1
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 9.0e-14 81.6 74 55.4
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 2.6e-13 80.1 250 30.4
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 7.6e-13 78.6 233 28.8
SEGI_10970 Sequoiadendron giganteum HOM05D005900 ORTHO05D007306 9.9e-13 78.2 104 46.2
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 2.9e-12 76.6 148 37.8
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 3.8e-12 76.3 147 35.4
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 1.4e-11 74.3 165 32.1
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 6.0e-10 68.9 183 35.0
Aqoxy2G04193 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.8e-09 67.4 135 37.0
Nn3g20876 Nelumbo nucifera HOM05D005900 ORTHO05D007306 9.0e-06 55.1 46 56.5


User provided reference genes

Program Settings