Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 6.0e-308 1060.1 559 100.0
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 8.9e-235 817.0 539 83.7
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 3.4e-234 815.1 539 83.1
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 7.1e-216 754.2 539 77.2
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 1.6e-146 523.9 552 57.2
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 1.8e-139 500.4 560 55.5
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 7.7e-138 495.0 554 56.0
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 5.2e-134 482.3 561 54.2
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.7e-132 477.2 565 53.1
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 2.4e-131 473.4 554 52.3
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 4.5e-130 469.2 548 52.6
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 1.3e-129 467.6 555 53.3
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 3.3e-128 463.0 550 51.3
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 7.3e-128 461.8 549 52.3
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 9.5e-128 461.5 601 48.8
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 1.6e-127 460.7 571 51.3
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 3.6e-127 459.5 537 53.8
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.6e-127 459.5 555 52.8
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.6e-127 459.5 553 52.8
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 8.9e-126 454.9 566 50.5
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 1.7e-124 450.7 551 52.3
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 5.4e-123 445.7 563 51.7
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 2.7e-122 443.4 550 54.5
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 7.8e-122 441.8 557 52.1
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 1.5e-120 437.6 552 51.4
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 4.3e-120 436.0 552 52.5
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.4e-118 431.0 592 49.5
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 3.1e-118 429.9 553 52.3
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 2.0e-117 427.2 562 51.2
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.7e-116 424.1 556 50.4
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 2.2e-116 423.7 542 51.1
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.2e-115 419.9 556 49.1
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 9.2e-115 418.3 558 51.4
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 2.1e-114 417.2 553 51.2
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 3.5e-114 416.4 607 47.4
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 6.0e-114 415.6 558 50.2
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 6.0e-114 415.6 552 50.5
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.0e-113 414.8 548 51.1
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 2.3e-113 413.7 514 52.3
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 2.3e-113 413.7 491 53.2
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 3.9e-113 412.9 547 48.6
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.9e-112 410.6 542 48.3
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.9e-112 410.6 541 49.4
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 2.5e-112 410.2 592 47.5
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 5.6e-112 409.1 566 50.4
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 7.3e-112 408.7 561 51.2
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.6e-111 407.5 557 48.1
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 3.6e-111 406.4 478 54.0
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 6.2e-111 405.6 567 49.2
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 6.2e-111 405.6 573 47.1
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 1.4e-110 404.4 544 49.6
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 1.4e-110 404.4 573 47.3
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.1e-110 403.3 551 49.5
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 2.0e-109 400.6 589 47.9
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 2.9e-108 396.7 563 47.6
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 3.7e-108 396.4 562 48.8
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 9.2e-107 391.7 550 46.4
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 9.2e-107 391.7 550 46.4
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 1.2e-106 391.3 560 48.9
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 4.6e-106 389.4 561 47.6
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 7.8e-106 388.7 596 46.5
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.7e-105 387.5 571 45.4
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 9.5e-104 381.7 584 46.1
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 2.8e-103 380.2 552 49.5
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 3.6e-103 379.8 570 44.2
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 6.2e-103 379.0 563 46.9
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 6.2e-103 379.0 657 42.6
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 1.1e-102 378.3 541 47.0
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 3.1e-102 376.7 575 45.2
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 8.9e-102 375.2 546 45.6
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 2.6e-101 373.6 567 45.3
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 9.9e-101 371.7 551 45.7
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 2.9e-100 370.2 552 44.9
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 4.9e-100 369.4 548 45.3
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 1.4e-99 367.9 551 47.2
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.9e-99 367.5 547 44.6
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 3.9e-97 359.8 555 45.9
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 1.9e-96 357.5 548 43.6
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 2.4e-94 350.5 543 44.4
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 3.1e-94 350.1 544 45.0
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 6.9e-94 349.0 543 44.4
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 7.6e-93 345.5 540 43.1
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 7.6e-93 345.5 546 44.7
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 1.7e-92 344.4 548 43.1
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 3.8e-92 343.2 548 44.5
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 8.4e-92 342.0 482 47.1
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 3.2e-91 340.1 414 49.0
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 2.7e-90 337.0 550 45.1
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 3.0e-89 333.6 547 43.3
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.5e-88 330.5 457 47.3
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 2.1e-87 327.4 539 42.5
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.8e-86 324.3 477 43.6
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.8e-86 324.3 557 44.0
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 5.8e-85 319.3 596 40.6
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 2.4e-83 313.9 546 41.4
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 4.2e-83 313.2 338 53.8
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 1.2e-82 311.6 577 39.9
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 8.7e-81 305.4 573 41.0
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 2.5e-80 303.9 538 40.1
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 4.3e-80 303.1 500 45.6
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 2.6e-77 293.9 543 38.9
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.3e-76 291.6 506 42.5
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.3e-76 291.6 506 42.5
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 5.1e-73 279.6 545 41.3
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 5.7e-72 276.2 313 50.2
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.4e-70 271.6 315 50.8
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 2.2e-68 264.2 402 48.0
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 3.8e-68 263.5 547 36.6
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 6.1e-66 256.1 551 37.4
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 5.3e-62 243.0 577 37.6
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 6.5e-60 236.1 441 43.5
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 3.2e-59 233.8 442 43.7
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 1.8e-49 201.4 411 40.1
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 2.8e-47 194.1 478 36.0
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 4.8e-47 193.4 345 39.4
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 2.3e-41 174.5 573 32.1
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 1.0e-36 159.1 584 31.7
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 7.2e-35 152.9 285 38.2
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.2e-34 152.1 447 33.1
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 6.8e-33 146.4 531 29.0
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 4.5e-29 133.7 253 43.1
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 1.1e-27 129.0 196 35.7
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 1.0e-20 105.9 250 34.8
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 3.8e-20 104.0 146 35.6
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 1.8e-17 95.1 244 33.6
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 2.0e-16 91.7 201 34.3
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 1.7e-15 88.6 130 51.5
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 3.2e-14 84.3 170 42.9
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 1.6e-13 82.0 200 34.0
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 2.0e-13 81.6 147 39.5
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.3e-12 78.2 98 50.0
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 2.3e-12 78.2 80 50.0
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 1.1e-11 75.9 236 34.3
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 9.5e-11 72.8 103 44.7
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 9.5e-11 72.8 103 44.7
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 9.5e-11 72.8 103 44.7
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 9.5e-11 72.8 103 44.7
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 9.5e-11 72.8 103 44.7
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 9.5e-11 72.8 103 44.7
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 5.2e-09 67.0 43 67.4
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 8.9e-09 66.2 115 40.0


User provided reference genes

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