Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 0.0e+00 1111.7 543 100.0
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 1.0e-259 899.8 543 83.4
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 1.6e-257 892.5 555 81.1
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 6.0e-228 794.3 504 80.0
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 1.1e-208 730.3 541 66.5
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 8.4e-206 720.7 543 66.3
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.8e-203 713.0 541 64.3
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 2.3e-203 712.6 541 65.2
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 5.7e-202 708.0 541 65.1
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 4.8e-201 704.9 543 64.8
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.7e-198 696.4 543 63.5
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 1.1e-197 693.7 544 64.0
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 1.1e-197 693.7 541 64.5
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 5.5e-197 691.4 545 63.7
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 2.1e-196 689.5 542 64.2
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 2.7e-196 689.1 543 63.7
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 4.6e-196 688.3 545 62.6
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 4.6e-196 688.3 548 63.3
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.3e-195 686.8 545 62.8
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 8.7e-195 684.1 546 63.9
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 8.7e-195 684.1 545 63.5
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 1.5e-194 683.3 548 63.5
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 2.5e-194 682.6 544 64.0
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 3.3e-194 682.2 547 62.9
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 6.3e-193 677.9 547 62.2
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 8.2e-193 677.6 541 63.2
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.4e-192 676.8 543 62.6
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 6.9e-192 674.5 544 61.9
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 9.0e-192 674.1 545 63.9
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 9.0e-192 674.1 542 63.3
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.2e-191 673.7 541 63.6
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.5e-191 673.3 541 61.6
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.5e-191 673.3 541 62.8
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 7.7e-191 671.0 545 63.7
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.0e-190 670.6 542 63.1
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 5.0e-190 668.3 552 61.2
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.1e-189 667.2 545 62.8
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 5.5e-189 664.8 551 62.1
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 9.4e-189 664.1 541 60.6
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 9.4e-189 664.1 574 59.4
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.6e-188 663.3 564 62.1
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.8e-187 659.8 543 61.9
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 8.8e-187 657.5 545 61.8
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.5e-186 656.0 564 61.3
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 2.8e-185 652.5 546 61.0
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 2.8e-185 652.5 546 59.7
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 8.2e-185 651.0 543 61.1
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 3.1e-184 649.0 546 60.3
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 6.9e-184 647.9 542 60.3
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 3.4e-183 645.6 541 58.8
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 7.7e-183 644.4 542 58.7
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 1.3e-182 643.7 541 60.3
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 2.2e-182 642.9 549 61.9
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.0e-182 641.7 570 59.1
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 6.5e-182 641.3 548 60.0
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 4.2e-181 638.6 565 57.0
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 9.4e-181 637.5 543 59.7
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 2.3e-179 632.9 586 54.9
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 2.3e-179 632.9 551 60.8
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 2.3e-179 632.9 584 55.3
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 8.8e-179 630.9 545 59.8
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 1.3e-177 627.1 584 54.6
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 2.2e-177 626.3 584 54.6
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 3.7e-177 625.5 584 54.6
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 4.8e-177 625.2 585 54.5
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.1e-176 624.0 541 57.1
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.1e-176 622.1 543 58.9
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 1.2e-175 620.5 547 58.0
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 2.6e-175 619.4 550 57.5
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.2e-174 616.3 503 60.8
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 3.8e-174 615.5 550 57.1
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.9e-173 613.2 502 62.2
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 5.5e-173 611.7 548 57.5
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 7.2e-173 611.3 552 56.9
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 2.7e-172 609.4 545 56.5
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 6.1e-172 608.2 546 58.2
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.4e-171 607.1 545 58.2
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 1.8e-171 606.7 543 58.0
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 8.8e-171 604.4 552 56.5
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 4.4e-170 602.1 544 57.9
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 5.7e-170 601.7 608 52.3
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 2.2e-169 599.7 549 55.9
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 6.3e-169 598.2 545 56.3
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.4e-168 597.0 545 56.1
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 4.1e-168 595.5 548 57.7
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 9.1e-168 594.3 542 56.6
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 4.5e-167 592.0 456 64.7
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 5.0e-166 588.6 554 56.3
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 5.0e-166 588.6 542 56.1
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 4.2e-165 585.5 542 56.3
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 1.2e-164 583.9 542 55.9
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.6e-164 583.6 547 56.9
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 6.1e-164 581.6 542 55.9
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 1.8e-163 580.1 511 57.9
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 8.8e-163 577.8 548 55.7
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.6e-162 576.2 542 56.3
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.7e-161 573.5 549 54.1
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 2.8e-161 572.8 544 56.2
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 3.7e-161 572.4 546 56.0
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 4.8e-161 572.0 544 56.2
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 4.8e-161 572.0 541 55.8
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 1.2e-159 567.4 473 61.9
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 4.5e-159 565.5 543 55.8
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 2.2e-158 563.1 550 53.5
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 2.5e-157 559.7 543 54.7
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 5.5e-157 558.5 457 61.1
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 2.1e-156 556.6 544 54.4
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 8.0e-156 554.7 456 61.4
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 1.4e-155 553.9 546 54.0
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 1.4e-155 553.9 546 54.0
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.3e-153 547.4 460 60.9
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 1.7e-153 547.0 546 52.9
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 1.7e-153 547.0 546 52.9
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 6.3e-153 545.0 542 52.8
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 7.7e-151 538.1 545 52.1
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 1.7e-150 537.0 504 56.2
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 8.6e-150 534.6 462 61.0
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 6.2e-140 501.9 415 62.9
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 2.3e-139 500.0 505 51.7
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 1.5e-138 497.3 569 48.3
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.4e-138 496.1 567 47.6
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 5.8e-138 495.4 527 49.9
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.0e-134 484.6 464 54.1
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 1.7e-134 483.8 358 67.6
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 9.5e-133 478.0 465 54.0
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 9.5e-133 478.0 576 45.5
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 9.2e-128 461.5 533 47.8
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 8.1e-124 448.4 462 50.0
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 6.4e-121 438.7 350 62.0
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.1e-117 427.9 354 58.8
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 3.3e-117 426.4 544 44.1
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.3e-117 426.0 389 55.0
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 3.4e-106 389.8 404 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 9.3e-104 381.7 597 38.0
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 1.7e-102 377.5 354 52.3
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 9.6e-101 371.7 329 57.1
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 3.1e-99 366.7 638 36.2
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.2e-97 360.5 384 48.2
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 4.3e-93 346.3 330 55.5
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 6.2e-92 342.4 611 36.0
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 4.6e-87 326.2 457 38.5
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 6.0e-87 325.9 369 47.2
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 9.3e-80 302.0 441 41.5
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 1.3e-68 265.0 187 66.8
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 3.1e-59 233.8 502 34.1
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 4.5e-58 229.9 237 51.1
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 7.0e-51 206.1 193 59.6
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-49 201.8 147 68.0
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.2e-49 201.1 177 60.5
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.0e-41 175.6 127 70.9
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.0e-41 175.6 189 52.4
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 2.1e-39 167.9 108 74.1
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.4e-37 160.6 100 76.0
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.3e-36 158.7 92 79.3
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.8e-35 154.8 127 53.5
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 3.1e-35 154.1 178 47.2
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 4.1e-35 153.7 152 50.0
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.1e-35 153.7 92 76.1
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 1.4e-30 138.7 84 71.4
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 1.4e-30 138.7 84 71.4
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 2.0e-29 134.8 178 42.1
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 2.0e-29 134.8 178 42.1
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 6.4e-28 129.8 133 51.9
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 2.3e-25 121.3 189 42.3
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 1.7e-20 105.1 67 73.1
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.4e-11 75.5 45 75.6


User provided reference genes

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