Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G016980 Citrullus lanatus HOM05D001692 ORTHO05D003541 1.9e-147 525.8 263 100.0
CsaV3_4G032610 Cucumis sativus L. HOM05D001692 ORTHO05D003541 2.7e-77 292.7 153 96.1
Sed0022537 Sechium edule HOM05D001692 ORTHO05D003541 3.0e-76 289.3 153 94.1
MELO3C025594.2 Cucumis melo HOM05D001692 ORTHO05D003541 4.0e-76 288.9 153 95.4
Sed0010110 Sechium edule HOM05D001692 ORTHO05D003541 7.5e-75 284.6 153 91.5
MD03G1254200 Malus domestica HOM05D001692 ORTHO05D003541 2.4e-65 253.1 152 80.3
Prupe.4G152300 Prunus persica HOM05D001692 ORTHO05D003541 3.1e-65 252.7 152 81.6
CiPaw.11G067800 Carya illinoinensis HOM05D001692 ORTHO05D003541 9.2e-65 251.1 154 81.2
MD11G1275800 Malus domestica HOM05D001692 ORTHO05D003541 1.0e-63 247.7 152 78.3
Dinv13327 Davidia involucrata HOM05D001692 ORTHO05D003541 1.7e-63 246.9 146 82.2
QL04p069054 Quercus lobata HOM05D001692 ORTHO05D003541 2.9e-63 246.1 154 78.6
Ciclev10018996m.g Citrus clementina HOM05D001692 ORTHO05D003541 3.8e-63 245.7 154 78.6
Manes.15G100600 Manihot esculenta HOM05D001692 ORTHO05D003541 3.8e-63 245.7 145 82.8
PGR031G3933 Punica granatum HOM05D001692 ORTHO05D003541 3.8e-63 245.7 154 79.2
FAN21G3942 Fragaria x ananassa HOM05D001692 ORTHO05D003541 1.1e-62 244.2 154 76.6
Thecc.07G141900 Theobroma cacao HOM05D001692 ORTHO05D003541 1.9e-62 243.4 154 76.6
CANSAT56G4466 Cannabis sativa HOM05D001692 ORTHO05D003541 2.5e-62 243.0 154 77.9
Gorai.002G042800 Gossypium raimondii HOM05D001692 ORTHO05D003541 2.5e-62 243.0 154 77.3
RcHm_v2.0_Chr5g0028351 Rosa chinensis HOM05D001692 ORTHO05D003541 2.5e-62 243.0 154 76.6
Phvul.005G062600 Phaseolus vulgaris HOM05D001692 ORTHO05D003541 3.3e-62 242.7 154 78.6
Gohir.D01G034600 Gossypium hirsutum HOM05D001692 ORTHO05D003541 4.3e-62 242.3 158 75.9
Nn4g26545 Nelumbo nucifera HOM05D001692 ORTHO05D003541 5.6e-62 241.9 156 75.6
COL.COLO4_17437 Corchorus olitorius HOM05D001692 ORTHO05D003541 7.3e-62 241.5 154 77.3
FAN25G2855 Fragaria x ananassa HOM05D001692 ORTHO05D003541 7.3e-62 241.5 154 76.0
Gohir.A01G043500 Gossypium hirsutum HOM05D001692 ORTHO05D003541 9.5e-62 241.1 154 77.3
Lj3g0005272 Lotus japonicus HOM05D001692 ORTHO05D003541 9.5e-62 241.1 154 77.3
FvH4_3g16980 Fragaria vesca HOM05D001692 ORTHO05D003541 1.2e-61 240.7 154 75.3
FvH4_3g17020 Fragaria vesca HOM05D001692 ORTHO05D003541 1.2e-61 240.7 154 75.3
FAN11G2256 Fragaria x ananassa HOM05D001692 ORTHO05D003541 1.2e-61 240.7 154 75.3
FAN16G0240 Fragaria x ananassa HOM05D001692 ORTHO05D003541 1.2e-61 240.7 154 75.3
Glyma.15G245600 Glycine max HOM05D001692 ORTHO05D003541 1.6e-61 240.4 154 79.2
TWI38G0873 Tripterygium wilfordii HOM05D001692 ORTHO05D003541 2.1e-61 240.0 154 79.2
TWI38G2140 Tripterygium wilfordii HOM05D001692 ORTHO05D003541 2.1e-61 240.0 154 79.2
FAN16G2563 Fragaria x ananassa HOM05D001692 ORTHO05D003541 2.8e-61 239.6 154 74.7
TAR626G1608 Trochodendron aralioides HOM05D001692 ORTHO05D003541 4.7e-61 238.8 154 74.7
Haze_08475 Corylus avellana HOM05D001692 ORTHO05D003541 6.1e-61 238.4 146 78.8
Potri.001G379800 Populus trichocarpa HOM05D001692 ORTHO05D003541 8.0e-61 238.0 143 80.4
TPR.G29673 Trifolium pratense HOM05D001692 ORTHO05D003541 8.0e-61 238.0 154 76.0
MD03G1254900 Malus domestica HOM05D001692 ORTHO05D003541 1.0e-60 237.7 154 74.7
Glyma.13G261200 Glycine max HOM05D001692 ORTHO05D003541 1.8e-60 236.9 153 77.1
Psat1g009080 Pisum sativum HOM05D001692 ORTHO05D003541 1.8e-60 236.9 154 74.0
Lalb_Chr20g0109021 Lupinus albus HOM05D001692 ORTHO05D003541 2.3e-60 236.5 154 76.6
Aqoxy1G01723 Aquilegia oxysepala HOM05D001692 ORTHO05D003541 4.0e-60 235.7 152 73.0
Cfa019475 Carpinus fangiana HOM05D001692 ORTHO05D003541 5.2e-60 235.3 146 78.1
FAN11G2574 Fragaria x ananassa HOM05D001692 ORTHO05D003541 1.2e-59 234.2 160 72.5
Hma1.2p1_0280F.1_g112850 Hydrangea macrophylla HOM05D001692 ORTHO05D003541 1.2e-59 234.2 146 77.4
Medtr2g072180 Medicago truncatula HOM05D001692 ORTHO05D003541 1.2e-59 234.2 154 76.6
THA.LOC104822597 Tarenaya hassleriana HOM05D001692 ORTHO05D003541 1.2e-59 234.2 153 75.8
MBI10_g02221_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D003541 1.5e-59 233.8 154 73.4
Sc03g0010920 Simmondsia chinensis HOM05D001692 ORTHO05D003541 2.0e-59 233.4 154 72.1
Ca_03403_v3 Cicer arietinum L. HOM05D001692 ORTHO05D003541 3.4e-59 232.6 154 75.3
Nn3g20725 Nelumbo nucifera HOM05D001692 ORTHO05D003541 4.4e-59 232.3 156 73.1
Nitab4.5_0005492g0010 Nicotiana tabacum HOM05D001692 ORTHO05D003541 4.4e-59 232.3 146 73.3
Nitab4.5_0006409g0010 Nicotiana tabacum HOM05D001692 ORTHO05D003541 4.4e-59 232.3 146 73.3
GSVIVG01000623001 Vitis vinifera HOM05D001692 ORTHO05D003541 5.7e-59 231.9 154 72.7
VMungo1080G1562 Vigna mungo HOM05D001692 ORTHO05D003541 7.5e-59 231.5 154 73.4
CSS0029038 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D003541 2.2e-58 229.9 146 76.7
arahy.Tifrunner.gnm1.ann1.SDH4Q1 Arachis hypogaea HOM05D001692 ORTHO05D003541 2.9e-58 229.6 154 75.3
Actinidia12620 Actinidia chinensis HOM05D001692 ORTHO05D003541 6.4e-58 228.4 146 74.7
RhsimUnG0205700 Rhododendron simsii HOM05D001692 ORTHO05D003541 6.4e-58 228.4 146 74.7
TAR627G0639 Trochodendron aralioides HOM05D001692 ORTHO05D003541 6.4e-58 228.4 154 71.4
arahy.Tifrunner.gnm1.ann1.RU54A6 Arachis hypogaea HOM05D001692 ORTHO05D003541 1.1e-57 227.6 154 74.7
CSS0027870 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D003541 1.1e-57 227.6 146 76.0
AL3G26920 Arabidopsis lyrata HOM05D001692 ORTHO05D003541 1.8e-57 226.9 153 72.5
Solyc07g061950.4 Solanum lycopersicum HOM05D001692 ORTHO05D003541 2.4e-57 226.5 146 72.6
Sopen07g030220 Solanum pennellii HOM05D001692 ORTHO05D003541 2.4e-57 226.5 146 72.6
Eucgr.F03216 Eucalyptus grandis HOM05D001692 ORTHO05D003541 4.1e-57 225.7 152 72.4
A01p39160 Brassica napus HOM05D001692 ORTHO05D003541 5.4e-57 225.3 153 71.9
BraA01t03961Z Brassica rapa HOM05D001692 ORTHO05D003541 5.4e-57 225.3 153 71.9
HanXRQChr03g0072701 Helianthus annuus HOM05D001692 ORTHO05D003541 5.4e-57 225.3 142 73.2
Aa31LG10G1660 Aethionema arabicum HOM05D001692 ORTHO05D003541 7.0e-57 224.9 153 71.9
Peaxi162Scf00111g01142 Petunia axillaris HOM05D001692 ORTHO05D003541 7.0e-57 224.9 146 71.9
PGSC0003DMG400007079 Solanum tuberosum HOM05D001692 ORTHO05D003541 7.0e-57 224.9 146 72.6
AT3G14590 Arabidopsis thaliana HOM05D001692 ORTHO05D003541 9.2e-57 224.6 153 71.9
Manes.03G091048 Manihot esculenta HOM05D001692 ORTHO05D003541 9.2e-57 224.6 142 77.5
Gohir.A04G046400 Gossypium hirsutum HOM05D001692 ORTHO05D003541 1.2e-56 224.2 153 69.9
MD00G1185600 Malus domestica HOM05D001692 ORTHO05D003541 1.2e-56 224.2 166 69.3
BcaC09g48428 Brassica carinata HOM05D001692 ORTHO05D003541 1.6e-56 223.8 153 71.2
C01p49860 Brassica napus HOM05D001692 ORTHO05D003541 1.6e-56 223.8 153 71.2
CARHR043850 Cardamine hirsuta HOM05D001692 ORTHO05D003541 1.6e-56 223.8 153 71.2
BolC1t04943H Brassica oleracea HOM05D001692 ORTHO05D003541 2.0e-56 223.4 153 71.2
Carub.0003s1429 Capsella rubella HOM05D001692 ORTHO05D003541 2.0e-56 223.4 153 72.5
EL10Ac4g08465 Beta vulgaris HOM05D001692 ORTHO05D003541 2.7e-56 223.0 152 68.4
Sp3g12860 Schrenkiella parvula HOM05D001692 ORTHO05D003541 2.7e-56 223.0 153 71.2
DCAR_017573 Daucus carota HOM05D001692 ORTHO05D003541 3.5e-56 222.6 153 69.9
Gohir.A07G155726 Gossypium hirsutum HOM05D001692 ORTHO05D003541 4.6e-56 222.2 153 69.9
CARHR089550 Cardamine hirsuta HOM05D001692 ORTHO05D003541 6.0e-56 221.9 153 71.2
Gorai.009G359900 Gossypium raimondii HOM05D001692 ORTHO05D003541 7.8e-56 221.5 153 69.9
CAN.G375.76 Capsicum annuum HOM05D001692 ORTHO05D003541 1.3e-55 220.7 146 69.9
CSS0044469 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D003541 1.7e-55 220.3 148 70.9
Oeu009875.1 Olea europaea HOM05D001692 ORTHO05D003541 2.3e-55 219.9 146 71.2
Carub.0001s4280 Capsella rubella HOM05D001692 ORTHO05D003541 3.0e-55 219.5 153 69.9
SHI27675 Sapria himalayana HOM05D001692 ORTHO05D003541 3.0e-55 219.5 172 68.0
Thhalv10020164m.g Eutrema salsugineum HOM05D001692 ORTHO05D003541 6.6e-55 218.4 153 70.6
RcHm_v2.0_Chr5g0028301 Rosa chinensis HOM05D001692 ORTHO05D003541 6.6e-55 218.4 201 58.7
Aa31LG8G1800 Aethionema arabicum HOM05D001692 ORTHO05D003541 8.6e-55 218.0 153 72.5
MD11G1276000 Malus domestica HOM05D001692 ORTHO05D003541 8.6e-55 218.0 193 60.1
AT1G53590 Arabidopsis thaliana HOM05D001692 ORTHO05D003541 1.9e-54 216.9 153 69.3
A05p18190 Brassica napus HOM05D001692 ORTHO05D003541 1.9e-54 216.9 153 70.6
SalBow8G2367 Salvia bowleyana HOM05D001692 ORTHO05D003541 1.9e-54 216.9 146 69.2
BraA05t20712Z Brassica rapa HOM05D001692 ORTHO05D003541 3.3e-54 216.1 153 69.9
PGSC0003DMG400008571 Solanum tuberosum HOM05D001692 ORTHO05D003541 3.3e-54 216.1 146 70.5
Lsat_1_v5_gn_5_126041 Lactuca sativa HOM05D001692 ORTHO05D003541 4.3e-54 215.7 146 71.2
CAN.G315.9 Capsicum annuum HOM05D001692 ORTHO05D003541 5.6e-54 215.3 138 73.2
Sp1g40090 Schrenkiella parvula HOM05D001692 ORTHO05D003541 7.3e-54 214.9 153 68.6
MSTRG.15019 Avicennia marina HOM05D001692 ORTHO05D003541 9.5e-54 214.5 146 69.9
PSO675G5015 Papaver somniferum HOM05D001692 ORTHO05D003541 9.5e-54 214.5 146 72.6
BcaB02g10911 Brassica carinata HOM05D001692 ORTHO05D003541 1.2e-53 214.2 153 69.3
C06p15020 Brassica napus HOM05D001692 ORTHO05D003541 1.2e-53 214.2 153 69.3
BolC6t36679H Brassica oleracea HOM05D001692 ORTHO05D003541 1.2e-53 214.2 153 69.3
HanXRQChr10g0305681 Helianthus annuus HOM05D001692 ORTHO05D003541 1.2e-53 214.2 146 71.2
Peaxi162Scf00000g00522 Petunia axillaris HOM05D001692 ORTHO05D003541 1.6e-53 213.8 146 69.2
HanXRQChr12g0373531 Helianthus annuus HOM05D001692 ORTHO05D003541 3.6e-53 212.6 146 68.5
Nitab4.5_0007142g0010 Nicotiana tabacum HOM05D001692 ORTHO05D003541 3.6e-53 212.6 146 69.2
Cc05_g10450 Coffea canephora HOM05D001692 ORTHO05D003541 6.2e-53 211.8 146 65.8
Solyc12g011420.2 Solanum lycopersicum HOM05D001692 ORTHO05D003541 6.2e-53 211.8 146 69.2
PSO541G5530 Papaver somniferum HOM05D001692 ORTHO05D003541 1.8e-52 210.3 146 71.9
Sopen12g006770 Solanum pennellii HOM05D001692 ORTHO05D003541 1.8e-52 210.3 145 69.0
SGA_v2.0_scaffold73G24332 Striga asiatica HOM05D001692 ORTHO05D003541 5.2e-52 208.8 146 67.1
PSO541G4432 Papaver somniferum HOM05D001692 ORTHO05D003541 8.9e-52 208.0 154 64.3
Eucgr.F01402 Eucalyptus grandis HOM05D001692 ORTHO05D003541 1.5e-51 207.2 154 61.7
Hund02324 Selenicereus undatus HOM05D001692 ORTHO05D003541 1.5e-51 207.2 156 66.0
Migut.M00625 Erythranthe guttata HOM05D001692 ORTHO05D003541 2.0e-51 206.8 146 66.4
MBI07_g26364_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D003541 4.4e-51 205.7 154 66.9
vmacro09425 Vaccinium macrocarpon HOM05D001692 ORTHO05D003541 5.8e-51 205.3 161 65.2
HPP92_002947 Vanilla planifolia HOM05D001692 ORTHO05D003541 5.8e-51 205.3 146 65.1
A05p34830 Brassica napus HOM05D001692 ORTHO05D003541 2.9e-50 203.0 154 66.2
CDE02G0339 Ceratophyllum demersum HOM05D001692 ORTHO05D003541 2.9e-50 203.0 146 65.1
BcaB06g25372 Brassica carinata HOM05D001692 ORTHO05D003541 6.4e-50 201.8 154 66.9
BolC5t33947H Brassica oleracea HOM05D001692 ORTHO05D003541 6.4e-50 201.8 155 67.7
BraA05t22295Z Brassica rapa HOM05D001692 ORTHO05D003541 6.4e-50 201.8 154 66.2
PGR083G0018 Punica granatum HOM05D001692 ORTHO05D003541 4.1e-49 199.1 146 64.4
Cpa.g.c34167.1 Carica papaya HOM05D001692 ORTHO05D003541 7.0e-49 198.4 122 77.0
CiPaw.12G046400 Carya illinoinensis HOM05D001692 ORTHO05D003541 4.6e-48 195.7 120 78.3
Os02g0313700 Oryza sativa ssp. japonica HOM05D001692 ORTHO05D003541 6.6e-47 191.8 154 58.4
CDE02G2342 Ceratophyllum demersum HOM05D001692 ORTHO05D003541 8.6e-47 191.4 147 63.9
unitig_62.g23092 Utricularia gibba HOM05D001692 ORTHO05D003541 1.5e-46 190.7 154 59.1
Zm00001eb203260 Zea mays HOM05D001692 ORTHO05D003541 1.5e-46 190.7 154 57.1
Actinidia03647 Actinidia chinensis HOM05D001692 ORTHO05D003541 3.3e-46 189.5 117 76.1
Ah.06g187540 Amaranthus hybridus HOM05D001692 ORTHO05D003541 5.6e-46 188.7 114 74.6
ATR0585G029 Amborella trichopoda HOM05D001692 ORTHO05D003541 5.6e-46 188.7 114 74.6
C05p52680 Brassica napus HOM05D001692 ORTHO05D003541 9.5e-46 188.0 155 64.5
Lj1C819T6 Lonicera japonica HOM05D001692 ORTHO05D003541 2.8e-45 186.4 146 67.1
Rhsim06G0186500 Rhododendron simsii HOM05D001692 ORTHO05D003541 3.1e-44 183.0 146 62.3
vmacro12002 Vaccinium macrocarpon HOM05D001692 ORTHO05D003541 4.0e-44 182.6 146 62.3
Lsat_1_v5_gn_9_101380 Lactuca sativa HOM05D001692 ORTHO05D003541 6.8e-44 181.8 109 72.5
Duzib268G0118 Durio zibethinus HOM05D001692 ORTHO05D003541 8.9e-44 181.4 108 78.7
HPP92_021477 Vanilla planifolia HOM05D001692 ORTHO05D003541 1.2e-43 181.0 154 53.9
Thhalv10011273m.g Eutrema salsugineum HOM05D001692 ORTHO05D003541 7.5e-43 178.3 108 75.9
Nitab4.5_0000639g0080 Nicotiana tabacum HOM05D001692 ORTHO05D003541 6.4e-42 175.3 146 59.6
ECA234G0027 Erigeron canadensis HOM05D001692 ORTHO05D003541 1.1e-41 174.5 107 73.8
BcaC05g29056 Brassica carinata HOM05D001692 ORTHO05D003541 3.2e-41 172.9 121 71.1
Duzib213G0773 Durio zibethinus HOM05D001692 ORTHO05D003541 4.1e-41 172.6 113 76.1
Os01g0242600 Oryza sativa ssp. japonica HOM05D001692 ORTHO05D003541 1.0e-39 167.9 152 53.9
Zm00001eb336950 Zea mays HOM05D001692 ORTHO05D003541 1.0e-39 167.9 152 52.6
Actinidia00870 Actinidia chinensis HOM05D001692 ORTHO05D003541 5.2e-36 155.6 144 57.6
BcaC08g44126 Brassica carinata HOM05D001692 ORTHO05D003541 1.3e-34 151.0 90 75.6
Lalb_Chr01g0016131 Lupinus albus HOM05D001692 ORTHO05D003541 1.7e-34 150.6 90 78.9
Lj8C143T14 Lonicera japonica HOM05D001692 ORTHO05D003541 6.4e-34 148.7 85 77.6
ECA234G1174 Erigeron canadensis HOM05D001692 ORTHO05D003541 6.6e-31 138.7 107 52.3
Mapoly0005s0081 Marchantia polymorpha HOM05D001692 ORTHO05D003541 1.8e-28 130.6 140 46.4
AagrBONN_evm.TU.Sc2ySwM_362.904 Anthoceros agrestis HOM05D001692 ORTHO05D003541 2.4e-28 130.2 142 45.8
Prupe.4G152200 Prunus persica HOM05D001692 ORTHO05D003541 1.4e-25 120.9 154 48.7
unitig_746.g26689 Utricularia gibba HOM05D000398 ORTHO05D000551 1.6e-24 117.5 161 39.1
Dinv26680 Davidia involucrata HOM05D001692 ORTHO05D003541 1.1e-22 111.3 59 83.1
SEGI_39358 Sequoiadendron giganteum HOM05D001692 ORTHO05D000001 3.3e-22 109.8 108 47.2
Pp3c7_3910 Physcomitrium patens HOM05D001692 ORTHO05D003541 8.1e-21 105.1 146 34.2
Pp3c11_23120 Physcomitrium patens HOM05D001692 ORTHO05D003541 1.1e-20 104.8 142 39.4
CBR_g24050 Chara braunii HOM05D001692 ORTHO05D003541 2.4e-20 103.6 143 37.8
ECA240G0884 Erigeron canadensis HOM05D001692 ORTHO05D003541 9.0e-20 101.7 142 41.5
Pp3c18_18010 Physcomitrium patens HOM05D001692 ORTHO05D003541 9.9e-19 98.2 145 37.2
Pp3c16_25540 Physcomitrium patens HOM05D001692 ORTHO05D003541 1.7e-18 97.4 140 35.7
Pp3c19_3120 Physcomitrium patens HOM05D001692 ORTHO05D003541 1.1e-17 94.7 159 34.0
CBR_g801 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-13 81.3 143 32.9
CBR_g58829 Chara braunii HOM05D001692 ORTHO05D003541 9.0e-12 75.1 150 33.3
Sc16g0007860 Simmondsia chinensis HOM05D001692 ORTHO05D003541 3.5e-08 63.2 41 73.2
SMO337G0056 Selaginella moellendorffii HOM05D001692 ORTHO05D003541 4.6e-08 62.8 144 28.5
RcHm_v2.0_Chr4g0392471 Rosa chinensis HOM05D001692 ORTHO05D003541 6.0e-08 62.4 35 74.3
Lalb_Chr01g0016141 Lupinus albus HOM05D001692 ORTHO05D003541 1.0e-07 61.6 77 45.5
CARHR216940 Cardamine hirsuta HOM05D001692 ORTHO05D003541 1.3e-07 61.2 53 62.3
AUR62037985 Chenopodium quinoa HOM05D001692 ORTHO05D003541 3.0e-07 60.1 41 65.9
Gohir.D01G034220 Gossypium hirsutum HOM05D001692 ORTHO05D047803 6.7e-07 58.9 40 72.5
Gorai.002G041900 Gossypium raimondii HOM05D001692 ORTHO05D047803 1.9e-06 57.4 40 72.5
Mapoly0122s0015 Marchantia polymorpha HOM05D001692 ORTHO05D003541 1.9e-06 57.4 137 29.2
AUR62019704 Chenopodium quinoa HOM05D001692 ORTHO05D003541 2.5e-06 57.0 41 63.4
SEGI_35320 Sequoiadendron giganteum HOM05D001692 ORTHO05D003541 7.4e-06 55.5 40 62.5


User provided reference genes

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