Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 2.6e-280 968.0 469 100.0
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 8.8e-228 793.5 500 81.4
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 1.7e-223 779.2 500 80.0
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 6.0e-208 727.6 508 74.4
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 3.4e-163 578.9 495 63.4
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 8.4e-162 574.3 502 62.7
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 1.4e-161 573.5 493 62.3
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 1.9e-161 573.2 489 63.0
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 5.5e-161 571.6 509 61.7
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 9.3e-161 570.9 489 63.2
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 2.7e-160 569.3 503 61.6
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.3e-159 567.0 494 62.8
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 2.3e-159 566.2 493 61.7
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 3.0e-159 565.8 492 61.8
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.1e-157 559.7 500 61.6
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.8e-156 556.6 494 61.9
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 1.2e-155 553.9 487 61.6
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 2.0e-155 553.1 492 60.6
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 3.4e-155 552.4 448 65.8
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 4.5e-155 552.0 495 61.4
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 1.3e-154 550.4 488 60.2
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 1.7e-154 550.1 495 59.8
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 6.5e-154 548.1 496 59.9
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 1.4e-153 547.0 493 60.0
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 3.2e-153 545.8 495 60.2
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 7.1e-153 544.7 487 59.5
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.2e-152 543.9 490 61.8
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 2.7e-152 542.7 490 61.8
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 3.9e-151 538.9 488 60.2
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 5.1e-151 538.5 501 59.3
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 5.1e-151 538.5 489 59.1
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 3.3e-150 535.8 481 60.3
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 3.3e-150 535.8 487 61.8
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 3.3e-150 535.8 487 61.6
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 4.3e-150 535.4 495 59.0
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 4.3e-150 535.4 492 58.5
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 1.8e-148 530.0 495 58.2
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 1.2e-147 527.3 483 59.0
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 1.2e-147 527.3 487 59.3
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 1.2e-147 527.3 500 58.2
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 5.9e-147 525.0 484 60.1
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 3.2e-145 519.2 476 59.7
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 4.6e-144 515.4 493 58.8
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 2.3e-143 513.1 492 59.3
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 2.3e-143 513.1 492 59.3
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 2.3e-143 513.1 483 57.6
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 3.0e-143 512.7 490 59.2
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 3.9e-143 512.3 535 55.1
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 6.7e-143 511.5 479 59.3
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 2.0e-142 510.0 484 58.3
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 2.0e-142 510.0 481 58.4
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 2.5e-142 509.6 488 57.8
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 3.3e-142 509.2 484 59.5
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 7.4e-142 508.1 481 58.4
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 1.1e-140 504.2 483 58.2
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.8e-140 503.4 480 57.9
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 4.1e-140 502.3 484 57.6
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 5.3e-140 501.9 490 56.3
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 7.7e-139 498.0 508 56.5
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 3.8e-138 495.7 483 55.9
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 5.5e-137 491.9 498 55.0
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 2.7e-136 489.6 498 56.8
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 3.6e-136 489.2 476 56.9
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.4e-135 487.3 487 54.6
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 1.8e-135 486.9 540 52.4
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 9.7e-134 481.1 501 54.9
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 8.2e-133 478.0 494 55.9
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 1.2e-131 474.2 502 54.0
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 3.5e-131 472.6 466 56.7
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 4.5e-131 472.2 468 57.1
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 4.5e-131 472.2 474 54.9
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 1.0e-130 471.1 462 58.4
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 3.8e-130 469.2 487 55.6
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 1.1e-129 467.6 498 55.0
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 6.7e-127 458.4 491 52.7
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 1.5e-126 457.2 483 55.7
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 2.0e-126 456.8 480 53.8
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 6.3e-125 451.8 475 53.5
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 8.5e-122 441.4 485 54.0
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 2.5e-121 439.9 488 51.6
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 2.1e-120 436.8 488 52.7
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 8.0e-120 434.9 499 50.7
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 8.0e-120 434.9 487 53.4
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.4e-119 434.1 487 51.1
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.5e-118 430.6 409 57.7
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 1.7e-117 427.2 490 50.2
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 5.3e-116 422.2 489 49.7
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 1.6e-115 420.6 454 51.5
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 5.5e-113 412.1 503 48.3
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 2.1e-112 410.2 453 53.9
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 6.1e-112 408.7 557 45.8
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 2.8e-109 399.8 412 54.6
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 9.1e-108 394.8 389 58.1
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 3.5e-107 392.9 492 47.6
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 1.3e-106 391.0 488 46.5
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 5.0e-106 389.0 476 49.4
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.5e-105 387.5 522 48.1
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 7.2e-105 385.2 521 44.7
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 6.1e-104 382.1 420 54.8
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 1.0e-103 381.3 380 57.1
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 6.8e-103 378.6 455 50.3
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 3.7e-101 372.9 429 51.5
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 4.5e-99 365.9 413 51.1
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 1.1e-97 361.3 396 52.5
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 1.9e-97 360.5 541 41.4
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 5.6e-97 359.0 281 65.5
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.4e-95 354.4 508 42.3
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 5.2e-95 352.4 478 45.8
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 7.3e-89 332.0 416 49.8
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 2.3e-82 310.5 856 30.1
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 3.6e-80 303.1 272 57.7
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 7.6e-78 295.4 322 51.9
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 1.3e-74 284.6 451 42.8
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.9e-68 264.2 171 75.4
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-62 243.8 597 33.3
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.9e-60 237.7 375 42.1
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 1.9e-57 227.6 126 84.1
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 2.8e-56 223.8 296 47.6
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 3.6e-56 223.4 226 52.7
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 9.0e-55 218.8 132 75.8
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 2.9e-53 213.8 488 33.0
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 4.6e-43 179.9 489 29.9
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 2.0e-38 164.5 281 36.3
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 7.2e-36 156.0 298 34.2
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 8.7e-34 149.1 84 82.1
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 4.3e-33 146.7 284 34.2
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 3.4e-22 110.5 76 67.1
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 3.8e-21 107.1 95 57.9
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 1.3e-16 92.0 104 44.2
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 4.8e-16 90.1 84 54.8
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 1.8e-15 88.2 53 79.2
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 2.2e-13 81.3 69 55.1
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 6.3e-08 63.2 94 38.3
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 8.2e-08 62.8 72 47.2
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 3.1e-07 60.8 43 65.1
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 4.1e-07 60.5 45 62.2
QL04p060164 Quercus lobata HOM05D005440 ORTHO05D007314 2.0e-06 58.2 127 37.0


User provided reference genes

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