Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G016120 Citrullus lanatus HOM05D005907 ORTHO05D007033 2.7e-58 228.4 112 100.0
Sed0019955 Sechium edule HOM05D005907 ORTHO05D007033 7.2e-35 150.6 104 70.2
Sed0007709 Sechium edule HOM05D005907 ORTHO05D007033 5.9e-21 104.4 109 48.6
Actinidia01244 Actinidia chinensis HOM05D005907 ORTHO05D007033 5.0e-20 101.3 105 51.4
COL.COLO4_16745 Corchorus olitorius HOM05D005907 ORTHO05D007033 1.1e-19 100.1 104 51.0
CSS0017808 Camellia sinensis var. sinensis HOM05D005907 ORTHO05D007033 2.5e-19 99.0 97 49.5
GSVIVG01036890001 Vitis vinifera HOM05D005907 ORTHO05D007033 2.5e-19 99.0 105 50.5
PGR031G0343 Punica granatum HOM05D005907 ORTHO05D007033 4.2e-19 98.2 105 46.7
Cc08_g05990 Coffea canephora HOM05D005907 ORTHO05D007033 9.4e-19 97.1 96 44.8
Haze_08421 Corylus avellana HOM05D005907 ORTHO05D007033 1.6e-18 96.3 105 49.5
Cfa012308 Carpinus fangiana HOM05D005907 ORTHO05D007033 3.6e-18 95.1 105 49.5
arahy.Tifrunner.gnm1.ann1.4G5U2W Arachis hypogaea HOM05D005907 ORTHO05D007033 6.1e-18 94.4 106 46.2
arahy.Tifrunner.gnm1.ann1.Y9HS7A Arachis hypogaea HOM05D005907 ORTHO05D007033 6.1e-18 94.4 106 46.2
Duzib205G2043 Durio zibethinus HOM05D005907 ORTHO05D007033 8.0e-18 94.0 95 47.4
CiPaw.11G074000 Carya illinoinensis HOM05D005907 ORTHO05D007033 1.0e-17 93.6 105 47.6
Lalb_Chr09g0325061 Lupinus albus HOM05D005907 ORTHO05D007033 1.4e-17 93.2 106 46.2
Thecc.03G320600 Theobroma cacao HOM05D005907 ORTHO05D007033 1.4e-17 93.2 97 52.6
CsaV3_4G007120 Cucumis sativus L. HOM05D005907 ORTHO05D007033 1.8e-17 92.8 101 46.5
ClCG07G011130 Citrullus lanatus HOM05D005907 ORTHO05D007033 2.3e-17 92.4 109 45.0
Solyc08g075290.2 Solanum lycopersicum HOM05D005907 ORTHO05D007033 3.0e-17 92.0 98 41.8
Migut.A00472 Erythranthe guttata HOM05D005907 ORTHO05D007033 4.0e-17 91.7 106 41.5
Oeu046770.1 Olea europaea HOM05D005907 ORTHO05D007033 6.7e-17 90.9 102 41.2
MSTRG.25750 Avicennia marina HOM05D005907 ORTHO05D007033 8.8e-17 90.5 98 39.8
Sopen08g023890 Solanum pennellii HOM05D005907 ORTHO05D007033 8.8e-17 90.5 98 41.8
Glyma.16G076400 Glycine max HOM05D005907 ORTHO05D007033 1.5e-16 89.7 107 43.9
Lj3A1053G42 Lonicera japonica HOM05D005907 ORTHO05D007033 1.5e-16 89.7 105 43.8
Manes.17G003749 Manihot esculenta HOM05D005907 ORTHO05D007033 1.5e-16 89.7 98 43.9
CAN.G998.7 Capsicum annuum HOM05D005907 ORTHO05D007033 2.0e-16 89.4 98 42.9
Gorai.004G176900 Gossypium raimondii HOM05D005907 ORTHO05D007033 2.0e-16 89.4 96 50.0
Psat2g145040 Pisum sativum HOM05D005907 ORTHO05D007033 2.0e-16 89.4 107 43.0
Nn1g09337 Nelumbo nucifera HOM05D005907 ORTHO05D007033 2.6e-16 89.0 97 45.4
Rhsim11G0037900 Rhododendron simsii HOM05D005907 ORTHO05D007033 2.6e-16 89.0 106 43.4
RcHm_v2.0_Chr7g0215261 Rosa chinensis HOM05D005907 ORTHO05D007033 3.3e-16 88.6 107 44.9
TPR.G8986 Trifolium pratense HOM05D005907 ORTHO05D007033 4.4e-16 88.2 107 41.1
Ciclev10012886m.g Citrus clementina HOM05D005907 ORTHO05D007033 9.7e-16 87.0 97 42.3
Lalb_Chr16g0380441 Lupinus albus HOM05D005907 ORTHO05D007033 9.7e-16 87.0 107 42.1
Nitab4.5_0000986g0090 Nicotiana tabacum HOM05D005907 ORTHO05D007033 2.8e-15 85.5 105 41.9
Peaxi162Scf00550g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 2.8e-15 85.5 98 42.9
vmacro00100 Vaccinium macrocarpon HOM05D005907 ORTHO05D007033 2.8e-15 85.5 91 47.3
Atru.chr8.2614 Acer truncatum HOM05D005907 ORTHO05D007033 3.7e-15 85.1 98 43.9
Oeu047809.2 Olea europaea HOM05D005907 ORTHO05D007033 4.8e-15 84.7 107 39.3
TAR636G1547 Trochodendron aralioides HOM05D005907 ORTHO05D007033 6.3e-15 84.3 104 42.3
Duzib068G0478 Durio zibethinus HOM05D005907 ORTHO05D007033 8.2e-15 84.0 92 46.7
FvH4_5g24980 Fragaria vesca HOM05D005907 ORTHO05D007033 8.2e-15 84.0 107 43.9
FAN18G3850 Fragaria x ananassa HOM05D005907 ORTHO05D007033 8.2e-15 84.0 107 43.9
Glyma.01G153000 Glycine max HOM05D005907 ORTHO05D007033 8.2e-15 84.0 108 43.5
TWI60G0533 Tripterygium wilfordii HOM05D005907 ORTHO05D007033 8.2e-15 84.0 105 44.8
Aa31LG2G14390 Aethionema arabicum HOM05D005907 ORTHO05D007033 1.1e-14 83.6 95 47.4
Medtr5g025640 Medicago truncatula HOM05D005907 ORTHO05D007033 1.1e-14 83.6 107 40.2
FAN04G3107 Fragaria x ananassa HOM05D005907 ORTHO05D007033 1.4e-14 83.2 107 43.0
FAN08G1334 Fragaria x ananassa HOM05D005907 ORTHO05D007033 1.4e-14 83.2 108 41.7
Nitab4.5_0006244g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 1.4e-14 83.2 101 43.6
Prupe.5G013600 Prunus persica HOM05D005907 ORTHO05D007033 1.4e-14 83.2 114 41.2
Gohir.D08G169700 Gossypium hirsutum HOM05D005907 ORTHO05D007033 1.8e-14 82.8 96 49.0
VMungo1215G2629 Vigna mungo HOM05D001324 ORTHO05D001220 1.8e-14 82.8 107 42.1
Glyma.09G218300 Glycine max HOM05D005907 ORTHO05D007033 2.4e-14 82.4 109 43.1
Nn3g19120 Nelumbo nucifera HOM05D005907 ORTHO05D007033 2.4e-14 82.4 98 39.8
Lalb_Chr05g0215181 Lupinus albus HOM05D005907 ORTHO05D007033 3.1e-14 82.0 95 45.3
Peaxi162Scf00876g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 4.1e-14 81.6 95 41.1
MD06G1011300 Malus domestica HOM05D005907 ORTHO05D007033 5.3e-14 81.3 110 43.6
SalBow4G0438 Salvia bowleyana HOM05D005907 ORTHO05D007033 5.3e-14 81.3 93 44.1
TAR629G0350 Trochodendron aralioides HOM05D005907 ORTHO05D007033 5.3e-14 81.3 96 43.8
Gohir.A08G148600 Gossypium hirsutum HOM05D005907 ORTHO05D007033 9.1e-14 80.5 96 47.9
THA.LOC104806200 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 9.1e-14 80.5 101 39.6
Potri.004G235000 Populus trichocarpa HOM05D005907 ORTHO05D007033 1.2e-13 80.1 99 41.4
Hund14310 Selenicereus undatus HOM05D005907 ORTHO05D007033 1.2e-13 80.1 105 38.1
CARHR031020 Cardamine hirsuta HOM05D005907 ORTHO05D007033 2.0e-13 79.3 102 38.2
MELO3C016217.2 Cucumis melo HOM05D005907 ORTHO05D007033 2.7e-13 79.0 61 59.0
Gorai.008G218600 Gossypium raimondii HOM05D005907 ORTHO05D007033 2.7e-13 79.0 97 43.3
Sp1g27370 Schrenkiella parvula HOM05D005907 ORTHO05D007033 2.7e-13 79.0 103 41.7
Carub.0001s3002 Capsella rubella HOM05D005907 ORTHO05D007033 3.5e-13 78.6 92 43.5
arahy.Tifrunner.gnm1.ann1.UI3LS8 Arachis hypogaea HOM05D005907 ORTHO05D007033 4.5e-13 78.2 100 46.0
A08p10440 Brassica napus HOM05D005907 ORTHO05D007033 4.5e-13 78.2 103 41.7
CARHR226160 Cardamine hirsuta HOM05D005907 ORTHO05D007033 4.5e-13 78.2 99 42.4
Lj2g0019236 Lotus japonicus HOM05D005907 ORTHO05D007033 4.5e-13 78.2 106 38.7
BcaB04g18131 Brassica carinata HOM05D005907 ORTHO05D007033 5.9e-13 77.8 103 39.8
CANSAT35G1964 Cannabis sativa HOM05D005907 ORTHO05D007033 7.7e-13 77.4 97 44.3
Gohir.D12G203800 Gossypium hirsutum HOM05D005907 ORTHO05D007033 7.7e-13 77.4 97 42.3
Aqoxy2G03476 Aquilegia oxysepala HOM05D005907 ORTHO05D007033 1.3e-12 76.6 104 37.5
THA.LOC104814387 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 1.7e-12 76.3 89 38.2
Gohir.A12G201000 Gossypium hirsutum HOM05D005907 ORTHO05D007033 2.9e-12 75.5 92 41.3
PSO339G2078 Papaver somniferum HOM05D005907 ORTHO05D007033 2.9e-12 75.5 102 41.2
Sp7g17980 Schrenkiella parvula HOM05D005907 ORTHO05D007033 3.8e-12 75.1 99 37.4
HanXRQChr08g0233691 Helianthus annuus HOM05D005907 ORTHO05D007033 5.0e-12 74.7 92 39.1
AL1G45790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 6.5e-12 74.3 98 40.8
arahy.Tifrunner.gnm1.ann1.VB8HUC Arachis hypogaea HOM05D005907 ORTHO05D007033 6.5e-12 74.3 100 45.0
AL7G34790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 8.5e-12 73.9 95 40.0
A01p11320 Brassica napus HOM05D005907 ORTHO05D007033 8.5e-12 73.9 95 40.0
BraA01t01076Z Brassica rapa HOM05D005907 ORTHO05D007033 8.5e-12 73.9 95 40.0
Phvul.002G122500 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 8.5e-12 73.9 85 43.5
VMungo0251G3198 Vigna mungo HOM05D005907 ORTHO05D007033 1.1e-11 73.6 106 36.8
ECA233G3754 Erigeron canadensis HOM05D005907 ORTHO05D007033 1.9e-11 72.8 96 39.6
Eucgr.E01152 Eucalyptus grandis HOM05D005907 ORTHO05D007033 1.9e-11 72.8 106 34.9
Medtr8g072220 Medicago truncatula HOM05D005907 ORTHO05D007033 1.9e-11 72.8 104 37.5
Carub.0007s2186 Capsella rubella HOM05D005907 ORTHO05D007033 2.5e-11 72.4 96 39.6
Thhalv10008873m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 2.5e-11 72.4 98 37.8
Thhalv10026210m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 2.5e-11 72.4 96 38.5
AT4G19370 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 3.2e-11 72.0 96 38.5
BraA08t33042Z Brassica rapa HOM05D005907 ORTHO05D007033 3.2e-11 72.0 110 39.1
BcaC07g37737 Brassica carinata HOM05D005907 ORTHO05D007033 4.2e-11 71.6 92 39.1
BcaNung01784 Brassica carinata HOM05D005907 ORTHO05D007033 4.2e-11 71.6 98 37.8
BolC8t48118H Brassica oleracea HOM05D005907 ORTHO05D007033 4.2e-11 71.6 92 39.1
PGR042G1103 Punica granatum HOM05D005907 ORTHO05D007033 4.2e-11 71.6 95 44.2
BcaC09g51418 Brassica carinata HOM05D005907 ORTHO05D007033 5.5e-11 71.2 95 38.9
C01p13330 Brassica napus HOM05D005907 ORTHO05D007033 5.5e-11 71.2 95 38.9
BolC1t01308H Brassica oleracea HOM05D005907 ORTHO05D007033 5.5e-11 71.2 95 38.9
ATR0568G210 Amborella trichopoda HOM05D005907 ORTHO05D007033 7.2e-11 70.9 107 41.1
Cpa.g.c30909 Carica papaya HOM05D005907 ORTHO05D007033 7.2e-11 70.9 107 38.3
Aa31LG6G1970 Aethionema arabicum HOM05D005907 ORTHO05D007033 1.6e-10 69.7 98 40.8
Sp4g03880 Schrenkiella parvula HOM05D005907 ORTHO05D007033 1.6e-10 69.7 100 36.0
CDE01G0013 Ceratophyllum demersum HOM05D005907 ORTHO05D007033 4.7e-10 68.2 98 39.8
Sed0021253 Sechium edule HOM05D005907 ORTHO05D007033 8.0e-10 67.4 53 62.3
SalBow8G0159 Salvia bowleyana HOM05D005907 ORTHO05D007033 1.0e-09 67.0 63 47.6
Manes.15G184500 Manihot esculenta HOM05D005907 ORTHO05D007033 4.0e-09 65.1 69 39.1
MELO3C032605.2 Cucumis melo HOM05D005907 ORTHO05D007033 6.8e-09 64.3 53 67.9
unitig_37.g12906 Utricularia gibba HOM05D005907 ORTHO05D007033 1.5e-08 63.2 100 34.0
Os02g0703300 Oryza sativa ssp. japonica HOM05D005907 ORTHO05D007033 2.0e-08 62.8 60 46.7
SGA_v2.0_scaffold121G33056 Striga asiatica HOM05D005907 ORTHO05D007033 1.7e-07 59.7 99 34.3
AT1G31720 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 2.2e-07 59.3 69 42.0
Lsat_1_v5_gn_6_17141 Lactuca sativa HOM05D005907 ORTHO05D007033 3.7e-07 58.5 74 33.8
EL10Ac5g12591 Beta vulgaris HOM05D005907 ORTHO05D007033 8.3e-07 57.4 51 49.0
Phvul.003G278300 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 2.4e-06 55.8 69 37.7
Sabra01G0179700 Salix brachista HOM05D005907 ORTHO05D007033 5.4e-06 54.7 70 37.1
Sc07g0008040 Simmondsia chinensis HOM05D005907 ORTHO05D007033 7.0e-06 54.3 70 35.7


User provided reference genes

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