Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 1.1e-192 676.4 338 100.0
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 2.2e-148 529.3 340 80.9
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 5.0e-148 528.1 340 80.9
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 8.5e-140 500.7 335 78.5
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 4.7e-114 415.2 347 64.0
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 8.0e-114 414.5 344 63.1
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.0e-113 414.1 345 63.5
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 9.8e-112 407.5 348 62.4
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.3e-111 407.1 341 63.6
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 1.3e-111 407.1 345 64.1
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 1.1e-110 404.1 347 61.7
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.1e-110 404.1 347 61.7
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 1.1e-110 404.1 339 63.1
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 3.2e-110 402.5 344 62.2
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 1.0e-108 397.5 347 61.1
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.1e-107 394.0 343 60.3
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 1.9e-107 393.3 345 61.2
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 7.3e-107 391.3 343 60.6
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 9.5e-107 391.0 347 60.8
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.2e-106 390.6 341 61.9
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 8.1e-106 387.9 338 63.0
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.8e-105 386.7 343 60.1
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.8e-105 386.7 343 60.9
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.3e-105 386.3 358 59.5
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 6.8e-105 384.8 341 61.3
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 8.9e-105 384.4 353 59.2
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.2e-104 384.0 344 61.3
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 2.0e-104 383.3 360 60.6
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 6.4e-103 378.3 343 59.5
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 8.3e-103 377.9 356 59.3
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.1e-102 377.5 353 59.2
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 1.1e-102 377.5 345 60.0
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 3.2e-102 375.9 349 60.2
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.1e-102 375.6 341 59.8
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 7.1e-102 374.8 340 60.6
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 7.1e-102 374.8 366 58.5
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 7.1e-102 374.8 364 58.2
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 9.2e-102 374.4 353 58.6
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.1e-101 373.2 348 59.8
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 2.7e-101 372.9 343 58.0
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 6.0e-101 371.7 363 57.6
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.7e-100 370.2 354 57.9
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 6.6e-100 368.2 352 57.7
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 1.1e-99 367.5 344 58.4
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.1e-99 367.5 361 56.2
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.9e-99 366.7 343 57.7
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 3.3e-99 365.9 347 58.2
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 1.6e-98 363.6 343 57.1
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.1e-98 363.2 338 58.6
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 2.1e-98 363.2 404 54.0
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 3.6e-98 362.5 344 58.1
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.6e-98 362.5 374 55.9
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.5e-96 357.1 284 66.2
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 1.5e-96 357.1 349 57.6
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 5.8e-96 355.1 340 58.5
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 5.8e-96 355.1 344 58.4
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 3.8e-95 352.4 345 56.5
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 8.4e-95 351.3 402 52.7
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 2.4e-94 349.7 347 54.2
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 9.2e-94 347.8 353 54.7
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 9.2e-94 347.8 405 50.9
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 1.2e-93 347.4 395 53.4
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 2.1e-93 346.7 349 55.0
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 7.8e-93 344.7 350 55.4
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 1.3e-92 344.0 392 52.0
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 1.7e-92 343.6 349 55.0
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 3.0e-92 342.8 360 52.2
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 8.6e-92 341.3 378 51.1
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 2.5e-91 339.7 308 59.1
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 7.3e-91 338.2 400 50.8
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 9.6e-91 337.8 308 58.8
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 2.8e-90 336.3 397 51.9
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 3.6e-90 335.9 356 53.4
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 8.1e-90 334.7 365 54.8
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.4e-89 333.2 312 57.7
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.1e-89 332.8 403 48.9
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 4.0e-89 332.4 315 60.6
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 3.4e-88 329.3 233 72.1
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 3.8e-87 325.9 275 61.5
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 6.4e-87 325.1 405 48.6
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 1.9e-86 323.6 372 51.1
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 1.2e-85 320.9 338 53.0
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 4.6e-85 318.9 334 52.1
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.0e-84 317.8 346 52.6
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 5.1e-84 315.5 289 59.2
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 6.6e-84 315.1 337 51.6
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 1.1e-83 314.3 320 54.1
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 3.3e-83 312.8 341 51.9
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 5.6e-83 312.0 344 49.1
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 1.3e-82 310.8 341 51.9
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 2.1e-82 310.1 350 49.1
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 5.3e-81 305.4 251 64.5
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 5.8e-80 302.0 409 44.7
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 5.4e-78 295.4 338 49.1
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 7.1e-78 295.0 326 52.5
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.2e-77 294.3 366 47.0
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.2e-77 294.3 314 52.5
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.5e-77 292.7 301 54.8
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.0e-76 291.2 276 56.5
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 7.4e-75 285.0 338 46.7
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 7.4e-75 285.0 338 46.7
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 4.8e-74 282.3 338 46.4
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 8.1e-74 281.6 242 60.3
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 2.4e-73 280.0 231 61.0
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 3.1e-73 279.6 224 62.1
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 1.2e-72 277.7 341 46.6
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 2.1e-69 266.9 340 44.7
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 2.1e-69 266.9 339 45.4
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 6.0e-69 265.4 338 45.3
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 2.3e-68 263.5 344 43.6
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 8.7e-68 261.5 278 52.5
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 2.5e-67 260.0 338 45.3
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 1.2e-64 251.1 343 43.7
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.2e-64 251.1 400 41.5
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 7.1e-62 241.9 335 42.4
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.8e-58 229.9 284 48.6
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 2.9e-55 219.9 279 44.4
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.3e-52 210.3 125 76.8
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 1.1e-51 208.0 193 58.5
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 3.3e-51 206.5 120 76.7
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.5e-48 197.6 186 60.2
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 2.5e-46 190.3 377 34.7
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 5.5e-46 189.1 247 42.9
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 9.7e-43 178.3 171 54.4
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.4e-36 157.9 165 53.9
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 3.3e-27 126.7 120 64.2
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.3e-26 124.8 73 78.1
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 4.1e-25 119.8 71 77.5
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.0e-24 117.5 122 54.9
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 1.1e-22 111.7 210 36.7
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.2e-19 101.7 141 42.6
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.4e-17 94.7 118 47.5
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 3.1e-17 93.6 97 54.6
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 5.4e-17 92.8 100 46.0
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 7.7e-16 89.0 79 57.0
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.9e-14 84.3 86 46.5
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 4.7e-13 79.7 55 67.3
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.0e-12 78.6 44 79.5
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 6.8e-12 75.9 55 70.9


User provided reference genes

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