Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 5.8e-266 920.6 569 100.0
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 1.0e-201 707.2 615 75.3
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 2.4e-195 686.0 616 68.0
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 2.8e-135 486.5 333 76.6
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 6.2e-135 485.3 336 75.3
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 8.2e-135 485.0 337 73.9
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 1.8e-134 483.8 335 75.2
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 4.0e-134 482.6 337 73.9
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 5.3e-134 482.3 336 74.4
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 1.5e-133 480.7 335 74.3
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 2.2e-132 476.9 339 74.9
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 1.9e-131 473.8 342 74.6
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 3.2e-131 473.0 337 72.1
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 3.2e-131 473.0 354 72.0
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 1.6e-130 470.7 475 62.3
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 2.1e-130 470.3 335 71.3
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 4.6e-130 469.2 336 72.0
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 7.9e-130 468.4 335 74.0
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 8.7e-129 464.9 337 71.8
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 3.3e-128 463.0 343 73.2
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 4.3e-128 462.6 338 70.7
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 4.3e-128 462.6 338 70.7
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 5.7e-128 462.2 342 72.2
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 5.7e-128 462.2 339 71.1
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 7.4e-128 461.8 342 72.2
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 7.4e-128 461.8 341 69.2
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 1.6e-127 460.7 342 71.9
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 2.2e-127 460.3 337 72.4
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 2.2e-127 460.3 335 71.0
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 2.8e-127 459.9 335 71.0
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 4.8e-127 459.1 333 72.7
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 4.8e-127 459.1 341 71.6
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 1.1e-126 458.0 341 70.7
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 1.4e-126 457.6 335 71.3
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 1.4e-126 457.6 337 72.4
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 1.8e-126 457.2 342 71.9
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 1.8e-126 457.2 335 71.6
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 1.8e-126 457.2 335 71.0
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 4.1e-126 456.1 337 71.5
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 6.9e-126 455.3 335 71.9
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 1.5e-125 454.1 338 70.1
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 2.0e-125 453.8 337 70.9
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 2.0e-125 453.8 341 69.5
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 2.6e-125 453.4 336 71.7
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 7.6e-125 451.8 336 69.6
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 1.0e-124 451.4 334 69.5
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 1.0e-124 451.4 337 70.6
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 2.9e-124 449.9 334 69.5
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 3.8e-124 449.5 337 70.3
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 8.5e-124 448.4 334 70.1
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 1.4e-123 447.6 337 70.6
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 5.5e-123 445.7 338 68.3
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 9.3e-123 444.9 339 69.9
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 1.2e-122 444.5 336 70.2
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 1.2e-122 444.5 335 69.6
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 3.6e-122 443.0 337 69.7
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 3.6e-122 443.0 336 69.6
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 6.1e-122 442.2 342 69.9
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 7.9e-122 441.8 335 69.0
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 1.4e-121 441.0 337 70.9
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 2.3e-121 440.3 336 69.6
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 3.0e-121 439.9 339 67.8
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 3.9e-121 439.5 336 69.0
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 3.9e-121 439.5 335 69.0
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 1.1e-120 438.0 340 69.1
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 1.9e-120 437.2 338 68.3
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 3.3e-120 436.4 339 70.5
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 4.3e-120 436.0 370 64.6
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 5.7e-120 435.6 341 67.7
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 2.8e-119 433.3 336 68.2
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 2.8e-119 433.3 336 68.2
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 3.7e-119 433.0 337 69.1
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 4.8e-119 432.6 336 66.7
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 4.8e-119 432.6 341 66.0
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 6.3e-119 432.2 336 67.9
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 1.1e-118 431.4 340 66.5
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 4.1e-118 429.5 340 66.5
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 2.0e-117 427.2 341 66.9
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 5.9e-117 425.6 319 69.3
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 1.3e-116 424.5 344 65.7
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.7e-116 424.1 362 64.6
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 1.0e-113 414.8 333 64.9
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 3.0e-113 413.3 409 58.7
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 3.9e-113 412.9 333 64.6
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 2.0e-112 410.6 336 65.2
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 2.6e-112 410.2 330 63.6
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 2.8e-111 406.8 342 65.2
Lj3A8G25 Lonicera japonica HOM05D006577 ORTHO05D008428 2.7e-106 390.2 273 74.0
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 4.1e-102 376.3 320 61.2
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 1.2e-101 374.8 578 42.9
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 3.2e-99 366.7 313 61.3
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 1.0e-97 361.7 318 61.0
BcaC09g51430 Brassica carinata HOM05D006577 ORTHO05D008428 1.7e-95 354.4 287 65.9
SGA_v2.0_scaffold144G35886 Striga asiatica HOM05D006577 ORTHO05D008428 2.8e-95 353.6 288 65.3
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 1.1e-86 325.1 249 67.9
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 5.9e-85 319.3 308 55.5
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 5.9e-77 292.7 241 64.7
Lj3A28G25 Lonicera japonica HOM05D006577 ORTHO05D008428 1.7e-71 274.6 205 69.8
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 3.0e-68 263.8 335 49.0
Hund17694 Selenicereus undatus HOM05D006577 ORTHO05D008428 1.4e-65 255.0 193 71.0
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 2.5e-51 207.6 156 67.9
Lj9P453T24 Lonicera japonica HOM05D006577 ORTHO05D008428 5.2e-49 199.9 157 65.0
HanXRQChr07g0198421 Helianthus annuus HOM05D006577 ORTHO05D008428 4.4e-48 196.8 191 57.1
MCO15G109 Micromonas commoda HOM05D006577 ORTHO05D008428 4.0e-41 173.7 288 38.2
TPR.G30154 Trifolium pratense HOM05D006577 ORTHO05D008428 5.8e-32 143.3 207 45.9
Os06g0708900 Oryza sativa ssp. japonica HOM05D006577 ORTHO05D008428 1.1e-27 129.0 93 72.0
Zm00001eb395460 Zea mays HOM05D006577 ORTHO05D008428 7.4e-27 126.3 117 62.4
Zm00001eb339160 Zea mays HOM05D006577 ORTHO05D008428 4.8e-26 123.6 93 69.9
VMungo0251G3731 Vigna mungo HOM05D006577 ORTHO05D008428 1.8e-25 121.7 90 70.0
MD15G1000700 Malus domestica HOM05D006577 ORTHO05D008428 6.9e-25 119.8 119 60.5
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.7e-23 115.2 88 64.8
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 1.5e-19 102.1 57 82.5
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 4.3e-19 100.5 73 72.6
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 2.1e-18 98.2 73 71.2
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 5.8e-16 90.1 54 79.6
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 7.6e-16 89.7 73 69.9
TPR.G13376 Trifolium pratense HOM05D006577 ORTHO05D008428 1.9e-14 85.1 67 68.7
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 9.3e-14 82.8 71 63.4
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 2.3e-12 78.2 38 86.8
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 2.3e-12 78.2 45 80.0
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 5.1e-12 77.0 45 80.0
Cre06.g280700 Chlamydomonas reinhardtii HOM05D006577 ORTHO05D008428 1.1e-11 75.9 129 31.8


User provided reference genes

Program Settings