Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 1.2e-178 629.8 324 100.0
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 1.9e-165 585.9 321 93.5
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 3.9e-158 561.6 322 88.5
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 1.4e-128 463.4 304 81.6
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 2.4e-115 419.5 317 68.5
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 7.0e-115 417.9 320 68.1
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 1.1e-112 410.6 315 67.9
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 1.1e-112 410.6 319 67.1
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.5e-112 410.2 315 67.9
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 7.2e-112 407.9 317 66.6
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 2.1e-111 406.4 318 66.7
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 2.3e-110 402.9 315 65.1
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 3.0e-110 402.5 322 65.8
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 4.0e-110 402.1 314 67.2
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 1.5e-109 400.2 315 66.0
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 2.6e-109 399.4 318 64.8
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 3.4e-109 399.1 315 64.8
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 9.7e-109 397.5 317 64.7
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 1.7e-108 396.7 308 65.9
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 6.3e-108 394.8 316 64.6
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 1.1e-107 394.0 311 64.0
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 1.4e-107 393.7 316 64.2
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 2.4e-107 392.9 308 65.9
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 9.1e-107 391.0 317 65.0
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.2e-106 390.6 317 64.0
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 1.2e-106 390.6 318 64.2
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 1.6e-106 390.2 317 64.4
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 2.0e-106 389.8 322 65.8
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 4.5e-106 388.7 317 62.8
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 7.7e-106 387.9 317 63.4
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 7.7e-106 387.9 317 62.8
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.0e-105 387.5 317 63.7
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.0e-105 387.5 331 60.1
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 1.3e-105 387.1 370 58.1
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.3e-105 387.1 317 63.7
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 1.3e-105 387.1 310 65.2
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 2.9e-105 386.0 314 64.6
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 2.9e-105 386.0 317 62.5
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 5.0e-105 385.2 309 65.0
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 8.5e-105 384.4 318 63.2
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 1.5e-104 383.6 314 63.7
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 1.9e-104 383.3 331 60.4
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 2.1e-103 379.8 318 62.3
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.1e-103 379.8 318 62.3
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 6.1e-103 378.3 317 60.6
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 8.0e-103 377.9 315 60.0
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.0e-102 377.5 315 62.9
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 1.4e-102 377.1 308 64.6
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 5.2e-102 375.2 312 62.2
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 8.8e-102 374.4 318 61.0
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.2e-101 374.0 313 63.9
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 1.5e-101 373.6 308 64.3
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 3.7e-100 369.0 315 60.6
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 4.8e-100 368.6 315 59.0
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 1.4e-99 367.1 318 59.1
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 1.4e-99 367.1 313 63.3
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 1.4e-99 367.1 315 58.7
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 4.1e-99 365.5 315 62.2
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 1.2e-98 364.0 316 61.1
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 1.6e-98 363.6 368 54.3
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 1.7e-97 360.1 356 57.0
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 8.6e-97 357.8 323 57.6
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 1.1e-96 357.5 374 53.5
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 2.5e-96 356.3 323 59.1
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 4.2e-96 355.5 315 61.0
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 2.8e-95 352.8 330 57.0
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.0e-94 349.0 318 59.7
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 8.9e-94 347.8 313 59.1
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 1.5e-93 347.1 314 58.9
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 2.0e-93 346.7 335 55.5
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 4.4e-93 345.5 309 58.6
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 7.5e-93 344.7 315 58.7
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 9.8e-93 344.4 310 60.0
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 1.3e-92 344.0 296 60.5
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 1.7e-92 343.6 315 59.4
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 1.8e-91 340.1 314 58.0
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 2.4e-91 339.7 313 57.8
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 3.2e-91 339.3 315 57.5
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 4.1e-91 339.0 315 57.5
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 2.7e-90 336.3 315 57.5
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 2.7e-90 336.3 316 56.3
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 3.5e-90 335.9 315 56.8
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 3.5e-90 335.9 315 56.8
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 3.5e-90 335.9 315 56.8
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 7.8e-90 334.7 300 60.3
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.7e-89 333.6 317 57.4
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 2.3e-89 333.2 314 58.6
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 6.6e-89 331.6 317 56.8
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 1.1e-88 330.9 313 59.1
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 1.9e-88 330.1 335 54.6
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 1.9e-88 330.1 315 56.2
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 5.6e-88 328.6 315 55.2
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 7.3e-88 328.2 317 56.5
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 7.3e-88 328.2 317 56.5
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 9.5e-88 327.8 315 56.8
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 1.2e-87 327.4 317 54.9
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 6.1e-87 325.1 316 56.6
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 2.3e-86 323.2 317 54.6
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 1.5e-85 320.5 325 55.7
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 3.7e-84 315.8 304 56.2
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 9.2e-83 311.2 254 62.2
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 1.2e-82 310.8 310 52.6
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 1.1e-80 304.3 309 54.4
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 3.3e-80 302.8 265 62.3
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.1e-78 297.7 315 51.4
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 8.9e-78 294.7 313 53.0
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 2.0e-77 293.5 264 60.2
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 1.3e-76 290.8 310 52.9
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.4e-75 286.6 361 49.9
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.5e-72 277.3 219 67.1
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 3.5e-66 256.1 315 47.3
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 3.5e-66 256.1 306 49.7
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 4.6e-66 255.8 318 48.7
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 3.9e-65 252.7 313 47.6
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 6.8e-62 241.9 273 50.5
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 5.8e-61 238.8 317 45.1
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 3.1e-54 216.5 312 42.9
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 9.0e-46 188.3 326 37.4
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 2.7e-42 176.8 109 82.6
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.8e-41 174.1 269 42.4
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 1.1e-40 171.4 170 53.5
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 4.5e-37 159.5 110 72.7
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 2.9e-36 156.8 178 45.5
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 5.5e-35 152.5 154 56.5
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 8.7e-33 145.2 181 47.5
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.5e-32 144.4 103 69.9
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 2.3e-25 120.6 248 34.3
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 3.7e-23 113.2 100 57.0
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 1.6e-18 97.8 337 28.8
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.4e-17 94.7 103 49.5
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 1.4e-17 94.7 108 45.4
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 5.7e-16 89.4 94 54.3
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 2.6e-13 80.5 82 52.4
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 4.5e-13 79.7 46 87.0
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 4.5e-13 79.7 46 87.0
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 4.5e-13 79.7 46 87.0
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 4.5e-13 79.7 54 77.8
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 1.7e-12 77.8 81 50.6
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 2.2e-12 77.4 67 59.7
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 6.5e-12 75.9 45 84.4
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 3.2e-11 73.6 52 65.4
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 6.7e-09 65.9 51 62.7
FAN24G2292 Fragaria x ananassa HOM05D005174 ORTHO05D006784 8.8e-09 65.5 122 36.1
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 1.7e-07 61.2 51 66.7
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 6.3e-07 59.3 36 75.0
Oeu059427.1 Olea europaea HOM05D005174 ORTHO05D006784 5.3e-06 56.2 49 51.0


User provided reference genes

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