Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 3.6e-40 167.9 93 100.0
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 9.8e-38 159.8 93 94.6
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 3.2e-36 154.8 93 92.5
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 2.2e-29 132.1 94 80.9
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.6e-27 125.9 94 77.7
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 2.7e-27 125.2 94 77.7
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 7.8e-27 123.6 94 74.5
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 4.3e-25 117.9 96 72.9
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.6e-24 115.9 95 71.6
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 3.6e-24 114.8 96 68.8
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 3.6e-24 114.8 94 71.3
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 4.7e-24 114.4 94 73.4
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 6.2e-24 114.0 93 72.0
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 1.1e-23 113.2 94 68.1
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 1.1e-23 113.2 94 67.0
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 1.1e-23 113.2 94 67.0
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.1e-23 113.2 96 66.7
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 1.1e-23 113.2 94 68.1
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 1.4e-23 112.8 94 67.0
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 1.8e-23 112.5 94 70.2
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 1.8e-23 112.5 84 73.8
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 3.1e-23 111.7 94 67.0
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 3.1e-23 111.7 94 71.3
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 4.0e-23 111.3 94 69.1
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 4.0e-23 111.3 94 67.0
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 4.0e-23 111.3 94 67.0
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 4.0e-23 111.3 95 70.5
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 5.2e-23 110.9 94 72.3
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 6.8e-23 110.5 96 67.7
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 6.8e-23 110.5 94 67.0
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 8.9e-23 110.2 94 64.9
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 8.9e-23 110.2 94 64.9
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 8.9e-23 110.2 94 64.9
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 8.9e-23 110.2 94 64.9
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 8.9e-23 110.2 94 64.9
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 1.5e-22 109.4 94 71.3
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 2.0e-22 109.0 94 69.1
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 3.4e-22 108.2 93 67.7
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 3.4e-22 108.2 100 67.0
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.4e-22 108.2 83 75.9
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 7.6e-22 107.1 94 68.1
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 9.9e-22 106.7 93 69.9
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 9.9e-22 106.7 94 68.1
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 9.9e-22 106.7 94 68.1
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 1.3e-21 106.3 96 70.8
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 2.2e-21 105.5 94 68.1
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 2.9e-21 105.1 94 67.0
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 2.9e-21 105.1 94 67.0
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 4.9e-21 104.4 94 68.1
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.9e-21 104.4 85 72.9
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 1.4e-20 102.8 94 67.0
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 1.9e-20 102.4 96 66.7
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 5.4e-20 100.9 94 66.0
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 7.1e-20 100.5 94 64.9
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 7.1e-20 100.5 118 56.8
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 9.2e-20 100.1 83 73.5
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 9.2e-20 100.1 93 61.3
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 1.6e-19 99.4 92 65.2
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 2.1e-19 99.0 93 65.6
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 2.7e-19 98.6 83 72.3
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 4.6e-19 97.8 94 62.8
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 6.0e-19 97.4 94 67.0
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 7.8e-19 97.1 84 69.0
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 1.0e-18 96.7 94 64.9
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 3.0e-18 95.1 96 64.6
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 6.6e-18 94.0 83 71.1
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 8.6e-18 93.6 94 63.8
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 1.1e-17 93.2 94 62.8
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 3.3e-17 91.7 118 51.7
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 4.3e-17 91.3 83 62.7
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 7.3e-17 90.5 83 63.9
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 1.2e-16 89.7 88 64.8
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 1.2e-16 89.7 83 66.3
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 1.2e-16 89.7 82 65.9
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 1.2e-16 89.7 82 67.1
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.6e-16 89.4 78 67.9
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 2.8e-16 88.6 98 58.2
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 3.6e-16 88.2 98 60.2
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 8.1e-16 87.0 85 63.5
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 1.1e-15 86.7 83 63.9
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 4.0e-15 84.7 101 57.4
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 4.0e-15 84.7 86 61.6
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 6.8e-15 84.0 84 65.5
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 6.8e-15 84.0 85 60.0
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 6.8e-15 84.0 93 55.9
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 1.2e-14 83.2 53 83.0
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 1.5e-14 82.8 51 84.3
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 2.0e-14 82.4 70 68.6
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 5.8e-14 80.9 77 64.9
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 7.6e-14 80.5 51 84.3
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 7.6e-14 80.5 83 59.0
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 9.9e-14 80.1 131 44.3
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 9.9e-14 80.1 47 91.5
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.3e-13 79.7 84 59.5
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 1.7e-13 79.3 83 57.8
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 4.9e-13 77.8 95 55.8
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 8.4e-13 77.0 87 56.3
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 8.4e-13 77.0 82 57.3
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 1.4e-12 76.3 96 56.2
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 9.3e-12 73.6 95 52.6
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 6.0e-11 70.9 88 52.3
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 3.0e-10 68.6 53 71.7
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 6.6e-10 67.4 93 50.5
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 6.6e-10 67.4 95 47.4
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.9e-09 65.9 92 51.1
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.9e-09 65.9 92 51.1
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 3.3e-09 65.1 80 51.2
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 5.6e-09 64.3 86 51.2
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 7.3e-09 63.9 86 50.0
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 9.6e-09 63.5 89 49.4
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 1.3e-08 63.2 95 46.3
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 1.3e-08 63.2 95 46.3
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 1.6e-08 62.8 56 60.7
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 1.6e-08 62.8 92 50.0
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.6e-08 62.8 106 42.5
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 2.8e-08 62.0 86 48.8
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 2.8e-08 62.0 86 48.8
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 2.8e-08 62.0 84 52.4
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.6e-08 61.6 108 41.7
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 4.8e-08 61.2 82 48.8
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 6.2e-08 60.8 86 46.5
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 6.2e-08 60.8 86 46.5
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 6.2e-08 60.8 91 48.4
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 8.1e-08 60.5 98 45.9
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 8.1e-08 60.5 93 47.3
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.1e-07 60.1 100 47.0
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 1.1e-07 60.1 86 46.5
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.1e-07 60.1 84 47.6
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 1.8e-07 59.3 105 44.8
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 1.8e-07 59.3 54 55.6
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 2.4e-07 58.9 105 43.8
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 2.4e-07 58.9 95 41.1
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 2.4e-07 58.9 99 41.4
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 4.0e-07 58.2 98 44.9
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 5.3e-07 57.8 96 42.7
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 5.3e-07 57.8 105 42.9
HPP92_009091 Vanilla planifolia HOM05D007429 ORTHO05D003505 5.3e-07 57.8 60 65.0
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 6.9e-07 57.4 83 47.0
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 6.9e-07 57.4 47 66.0
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 6.9e-07 57.4 47 66.0
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 6.9e-07 57.4 52 57.7
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 9.0e-07 57.0 75 46.7
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 9.0e-07 57.0 107 39.3
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.2e-06 56.6 63 55.6
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.5e-06 56.2 99 45.5
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 1.5e-06 56.2 99 43.4
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 1.5e-06 56.2 102 41.2
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 2.0e-06 55.8 110 40.9
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.0e-06 55.8 98 43.9
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 2.6e-06 55.5 62 53.2
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 2.6e-06 55.5 64 54.7
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 2.6e-06 55.5 66 50.0
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 2.6e-06 55.5 102 43.1
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 2.6e-06 55.5 92 42.4
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.6e-06 55.5 107 39.3
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 3.4e-06 55.1 78 48.7
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 4.4e-06 54.7 76 50.0
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 5.8e-06 54.3 76 51.3
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 5.8e-06 54.3 93 46.2
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 5.8e-06 54.3 78 48.7
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 7.6e-06 53.9 62 54.8
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 7.6e-06 53.9 91 46.2
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 9.9e-06 53.5 75 48.0


User provided reference genes

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