Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 2.8e-274 948.0 470 100.0
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 4.0e-188 661.8 357 92.2
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 3.8e-186 655.2 366 90.2
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 1.1e-180 637.1 357 88.5
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 4.9e-178 628.2 356 85.7
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 8.4e-178 627.5 357 86.8
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 9.3e-177 624.0 356 85.4
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 1.2e-176 623.6 357 85.7
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.6e-176 623.2 357 86.3
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 3.5e-176 622.1 430 74.9
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 6.0e-176 621.3 427 74.0
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 6.0e-176 621.3 357 86.0
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 7.9e-176 620.9 357 85.2
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 7.9e-176 620.9 357 85.4
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.0e-175 620.5 427 73.8
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 1.0e-175 620.5 356 85.1
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 1.3e-175 620.2 357 85.4
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.8e-175 619.8 427 74.0
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 3.0e-175 619.0 357 85.7
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 3.0e-175 619.0 357 85.2
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 5.1e-175 618.2 357 85.4
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 5.1e-175 618.2 427 73.8
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 6.7e-175 617.8 357 84.6
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 8.7e-175 617.5 360 85.3
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 8.7e-175 617.5 354 85.6
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 1.1e-174 617.1 357 84.9
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 1.5e-174 616.7 357 85.2
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 1.5e-174 616.7 357 84.6
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 1.9e-174 616.3 356 84.0
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.9e-174 616.3 357 85.7
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 4.3e-174 615.1 357 84.9
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 4.3e-174 615.1 357 84.6
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 5.6e-174 614.8 357 85.2
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 7.4e-174 614.4 360 84.2
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 1.3e-173 613.6 356 84.0
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 1.6e-173 613.2 357 84.6
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 1.6e-173 613.2 357 83.8
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 1.1e-172 610.5 357 82.9
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 2.4e-172 609.4 356 83.4
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 4.0e-172 608.6 355 83.7
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 5.3e-172 608.2 357 83.2
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 5.3e-172 608.2 357 83.8
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 6.9e-172 607.8 420 74.0
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 6.9e-172 607.8 357 83.5
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 1.5e-171 606.7 371 80.9
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 2.6e-171 605.9 356 82.9
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 4.5e-171 605.1 356 82.6
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 1.7e-170 603.2 355 83.4
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 1.7e-170 603.2 357 81.8
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 2.2e-170 602.8 357 82.1
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 3.8e-170 602.1 427 73.3
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 4.9e-170 601.7 356 82.3
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 4.9e-170 601.7 356 82.0
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 6.4e-170 601.3 357 82.6
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 3.2e-169 599.0 357 81.8
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 7.1e-169 597.8 356 81.5
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 3.5e-168 595.5 357 81.0
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 1.0e-167 594.0 356 80.3
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 1.8e-167 593.2 354 81.4
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 1.1e-166 590.5 357 79.8
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 2.8e-165 585.9 360 79.7
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 3.7e-165 585.5 363 78.5
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 4.8e-165 585.1 357 79.8
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 9.3e-161 570.9 357 79.8
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 1.8e-159 566.6 322 85.7
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 1.1e-158 563.9 391 71.6
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 1.1e-158 563.9 354 76.6
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 2.5e-158 562.8 354 76.6
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 2.5e-158 562.8 354 76.6
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 2.5e-158 562.8 354 76.6
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 4.3e-158 562.0 354 76.6
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 5.7e-158 561.6 354 76.3
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 7.4e-158 561.2 354 76.6
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 7.4e-158 561.2 354 76.6
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 1.4e-156 557.0 354 76.0
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 4.1e-156 555.4 359 75.2
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 9.0e-156 554.3 313 88.2
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 3.4e-155 552.4 356 73.9
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 5.9e-155 551.6 356 74.7
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 1.3e-154 550.4 356 74.2
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 2.9e-154 549.3 356 73.6
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 2.9e-154 549.3 355 77.7
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 3.8e-154 548.9 356 78.1
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 3.8e-154 548.9 361 78.4
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 7.2e-153 544.7 353 73.9
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 7.9e-152 541.2 359 73.3
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 3.0e-151 539.3 299 87.0
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 2.5e-150 536.2 312 82.4
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 1.7e-149 533.5 313 82.1
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 4.8e-149 531.9 421 67.2
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 1.4e-148 530.4 354 72.9
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 2.4e-148 529.6 392 68.1
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 3.1e-148 529.3 384 70.8
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 5.3e-148 528.5 355 71.5
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 2.7e-144 516.2 359 71.3
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 1.4e-143 513.8 284 90.8
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 5.1e-143 511.9 375 66.4
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 2.2e-141 506.5 357 74.5
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 1.7e-138 496.9 356 68.0
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 8.5e-138 494.6 357 70.0
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 1.4e-137 493.8 358 71.2
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 2.3e-135 486.5 282 85.1
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 3.0e-135 486.1 356 66.6
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 3.2e-129 466.1 373 65.1
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 2.8e-125 453.0 354 63.6
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 5.0e-122 442.2 357 64.7
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.5e-121 440.7 254 82.7
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 1.0e-119 434.5 402 56.0
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 9.8e-118 427.9 356 58.1
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 3.8e-114 416.0 239 86.6
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.5e-105 386.7 213 87.3
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 3.1e-95 353.2 203 81.3
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 1.2e-88 331.3 201 80.6
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 2.7e-83 313.5 202 77.2
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 1.1e-76 291.6 204 67.6
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 9.9e-62 241.9 288 45.8
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 2.5e-49 200.7 377 36.3
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 1.6e-48 198.0 123 84.6
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 1.0e-42 178.7 246 43.5
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.0e-42 178.7 214 46.7
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 8.8e-34 149.1 101 67.3
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 3.3e-33 147.1 85 77.6
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 1.3e-29 135.2 138 55.1
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 8.5e-29 132.5 91 69.2
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 2.3e-26 124.4 165 43.6
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 5.2e-18 96.7 74 70.3
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 2.2e-13 81.3 100 44.0
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 8.5e-13 79.3 122 44.3
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.5e-12 78.6 127 37.8
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 1.9e-12 78.2 93 47.3
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 3.2e-12 77.4 127 37.0
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 7.2e-12 76.3 62 62.9
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 2.8e-08 64.3 34 76.5
TAR383G0536 Trochodendron aralioides HOM05D005974 ORTHO05D007201 6.3e-08 63.2 59 54.2
FvH4_5g31180 Fragaria vesca HOM05D000076 ORTHO05D005802 3.5e-06 57.4 31 80.6


User provided reference genes

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