Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G014990 Citrullus lanatus HOM05D006497 ORTHO05D008263 3.8e-76 288.1 146 100.0
MELO3C003479.2 Cucumis melo HOM05D006497 ORTHO05D008263 3.1e-70 268.5 146 93.2
CsaV3_3G048400 Cucumis sativus L. HOM05D006497 ORTHO05D008263 6.4e-68 260.8 146 90.4
Sed0009640 Sechium edule HOM05D006497 ORTHO05D008263 1.2e-53 213.4 147 76.9
Sed0025405 Sechium edule HOM05D006497 ORTHO05D008263 2.7e-50 202.2 146 74.7
Nitab4.5_0000318g0100 Nicotiana tabacum HOM05D006497 ORTHO05D008263 4.2e-43 178.3 148 68.9
Nitab4.5_0002021g0040 Nicotiana tabacum HOM05D006497 ORTHO05D008263 2.7e-42 175.6 148 66.9
Prupe.1G443400 Prunus persica HOM05D006497 ORTHO05D008263 2.7e-42 175.6 149 64.4
QL12p040844 Quercus lobata HOM05D006497 ORTHO05D008263 1.0e-41 173.7 159 61.6
CiPaw.08G027800 Carya illinoinensis HOM05D006497 ORTHO05D008263 1.8e-41 172.9 113 78.8
Atru.chr7.2042 Acer truncatum HOM05D006497 ORTHO05D008263 5.1e-41 171.4 146 60.3
COL.COLO4_21011 Corchorus olitorius HOM05D006497 ORTHO05D008263 5.1e-41 171.4 146 63.0
GSVIVG01035327001 Vitis vinifera HOM05D006497 ORTHO05D008263 8.7e-41 170.6 146 63.0
Actinidia18207 Actinidia chinensis HOM05D006497 ORTHO05D008263 1.1e-40 170.2 146 63.7
Potri.018G058200 Populus trichocarpa HOM05D006497 ORTHO05D008263 1.5e-40 169.9 146 63.7
MD08G1108800 Malus domestica HOM05D006497 ORTHO05D008263 2.5e-40 169.1 147 63.9
Rhsim05G0006000 Rhododendron simsii HOM05D006497 ORTHO05D008263 2.5e-40 169.1 146 64.4
CANSAT54G2618 Cannabis sativa HOM05D006497 ORTHO05D008263 7.4e-40 167.5 151 64.2
Cpa.g.sc27.217 Carica papaya HOM05D006497 ORTHO05D008263 7.4e-40 167.5 154 61.7
CSS0028638 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 9.7e-40 167.2 147 63.3
Eucgr.C00622 Eucalyptus grandis HOM05D006497 ORTHO05D008263 2.2e-39 166.0 153 59.5
Gohir.A07G022176 Gossypium hirsutum HOM05D006497 ORTHO05D008263 2.2e-39 166.0 152 59.9
Hma1.2p1_0049F.1_g028230 Hydrangea macrophylla HOM05D006497 ORTHO05D008263 2.8e-39 165.6 110 76.4
FvH4_2g35131 Fragaria vesca HOM05D006497 ORTHO05D008263 6.3e-39 164.5 148 63.5
TAR636G3582 Trochodendron aralioides HOM05D006497 ORTHO05D008263 8.2e-39 164.1 147 59.2
CSS0007660 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.1e-38 163.7 148 62.2
CSS0049899 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.1e-38 163.7 148 62.2
PSO210G2909 Papaver somniferum HOM05D006497 ORTHO05D008263 1.1e-38 163.7 108 75.0
Gorai.001G024500 Gossypium raimondii HOM05D006497 ORTHO05D008263 1.4e-38 163.3 152 59.2
Thecc.09G049300 Theobroma cacao HOM05D006497 ORTHO05D008263 1.4e-38 163.3 149 62.4
Duzib168G0301 Durio zibethinus HOM05D006497 ORTHO05D008263 1.8e-38 162.9 152 59.9
FAN15G0473 Fragaria x ananassa HOM05D006497 ORTHO05D008263 1.8e-38 162.9 156 60.3
Nn8g39006 Nelumbo nucifera HOM05D006497 ORTHO05D008263 1.8e-38 162.9 113 73.5
Migut.A00169 Erythranthe guttata HOM05D006497 ORTHO05D008263 2.4e-38 162.5 146 60.3
PGR031G1870 Punica granatum HOM05D006497 ORTHO05D008263 2.4e-38 162.5 109 73.4
Sopen07g031330 Solanum pennellii HOM05D006497 ORTHO05D008263 2.4e-38 162.5 98 78.6
Peaxi162Scf00840g00427 Petunia axillaris HOM05D006497 ORTHO05D008263 3.1e-38 162.2 98 80.6
Haze_01965 Corylus avellana HOM05D006497 ORTHO05D008263 5.3e-38 161.4 109 74.3
RcHm_v2.0_Chr6g0306821 Rosa chinensis HOM05D006497 ORTHO05D008263 6.9e-38 161.0 148 60.8
Solyc07g063140.1 Solanum lycopersicum HOM05D006497 ORTHO05D008263 6.9e-38 161.0 147 61.9
Migut.E01547 Erythranthe guttata HOM05D006497 ORTHO05D008263 9.0e-38 160.6 144 61.1
Ciclev10009788m.g Citrus clementina HOM05D006497 ORTHO05D008263 1.2e-37 160.2 153 56.9
SalBow1G7152 Salvia bowleyana HOM05D006497 ORTHO05D008263 1.5e-37 159.8 146 60.3
Cfa005390 Carpinus fangiana HOM05D006497 ORTHO05D008263 2.0e-37 159.5 109 73.4
PGSC0003DMG400012416 Solanum tuberosum HOM05D006497 ORTHO05D008263 2.6e-37 159.1 147 61.2
Sabra18G0054600 Salix brachista HOM05D006497 ORTHO05D008263 4.5e-37 158.3 146 59.6
Lsat_1_v5_gn_3_27161 Lactuca sativa HOM05D006497 ORTHO05D008263 1.0e-36 157.1 147 59.9
Nn8g40951 Nelumbo nucifera HOM05D006497 ORTHO05D008263 1.3e-36 156.8 114 72.8
MSTRG.11681 Avicennia marina HOM05D006497 ORTHO05D008263 1.7e-36 156.4 146 58.9
DCAR_003057 Daucus carota HOM05D006497 ORTHO05D008263 2.9e-36 155.6 120 66.7
PSO210G1815 Papaver somniferum HOM05D006497 ORTHO05D008263 2.9e-36 155.6 105 74.3
Sc09g0009540 Simmondsia chinensis HOM05D006497 ORTHO05D008263 3.8e-36 155.2 142 59.9
Cc08_g10030 Coffea canephora HOM05D006497 ORTHO05D008263 6.5e-36 154.5 136 58.8
THA.LOC104803742 Tarenaya hassleriana HOM05D006497 ORTHO05D008263 3.2e-35 152.1 152 55.3
CAN.G162.59 Capsicum annuum HOM05D006497 ORTHO05D008263 5.5e-35 151.4 149 61.7
Aqoxy6G00985 Aquilegia oxysepala HOM05D006497 ORTHO05D008263 9.4e-35 150.6 130 62.3
ECA246G5018 Erigeron canadensis HOM05D006497 ORTHO05D008263 2.7e-34 149.1 98 74.5
AUR62040211 Chenopodium quinoa HOM05D006497 ORTHO05D008263 4.6e-34 148.3 117 61.5
arahy.Tifrunner.gnm1.ann1.0Y6FKJ Arachis hypogaea HOM05D006497 ORTHO05D008263 6.1e-34 147.9 144 59.0
C03p86910 Brassica napus HOM05D006497 ORTHO05D008263 6.1e-34 147.9 134 56.7
BolC3t20984H Brassica oleracea HOM05D006497 ORTHO05D008263 6.1e-34 147.9 134 56.7
Ah.10g034670 Amaranthus hybridus HOM05D006497 ORTHO05D008263 7.9e-34 147.5 100 70.0
arahy.Tifrunner.gnm1.ann1.E0CW41 Arachis hypogaea HOM05D006497 ORTHO05D008263 7.9e-34 147.5 144 56.9
EL10Ac2g03958 Beta vulgaris HOM05D006497 ORTHO05D008263 7.9e-34 147.5 145 53.1
BcaB03g12770 Brassica carinata HOM05D006497 ORTHO05D008263 1.4e-33 146.7 109 63.3
Sp7g30690 Schrenkiella parvula HOM05D006497 ORTHO05D008263 2.3e-33 146.0 96 70.8
A08p17840 Brassica napus HOM05D006497 ORTHO05D008263 5.1e-33 144.8 109 63.3
BraA08t33734Z Brassica rapa HOM05D006497 ORTHO05D008263 6.7e-33 144.4 109 63.3
AUR62009213 Chenopodium quinoa HOM05D006497 ORTHO05D008263 8.8e-33 144.1 121 60.3
Thhalv10026449m.g Eutrema salsugineum HOM05D006497 ORTHO05D008263 8.8e-33 144.1 135 54.1
CDE10G0177 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 1.1e-32 143.7 97 71.1
Os03g0651000 Oryza sativa ssp. japonica HOM05D006497 ORTHO05D008263 7.4e-32 141.0 98 69.4
Ca_10596_v3 Cicer arietinum L. HOM05D006497 ORTHO05D008263 9.7e-32 140.6 111 61.3
CDE10G1018 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 2.8e-31 139.0 97 69.1
BcaNung02143 Brassica carinata HOM05D006497 ORTHO05D008263 3.7e-31 138.7 143 52.4
BolC7t46384H Brassica oleracea HOM05D006497 ORTHO05D008263 6.3e-31 137.9 139 51.1
VMungo0720G1877 Vigna mungo HOM05D006497 ORTHO05D008263 6.3e-31 137.9 98 66.3
TPR.G11934 Trifolium pratense HOM05D006497 ORTHO05D008263 8.2e-31 137.5 111 63.1
Carub.0007s0757 Capsella rubella HOM05D006497 ORTHO05D008263 1.1e-30 137.1 96 65.6
Phvul.007G091500 Phaseolus vulgaris HOM05D006497 ORTHO05D008263 1.1e-30 137.1 130 53.8
CARHR240920 Cardamine hirsuta HOM05D006497 ORTHO05D008263 1.4e-30 136.7 98 65.3
unitig_32.g11478 Utricularia gibba HOM05D006497 ORTHO05D008263 1.4e-30 136.7 119 58.8
AL7G18780 Arabidopsis lyrata HOM05D006497 ORTHO05D008263 1.8e-30 136.3 96 64.6
AT4G32915 Arabidopsis thaliana HOM05D006497 ORTHO05D008263 1.8e-30 136.3 112 55.4
ATR0749G075 Amborella trichopoda HOM05D006497 ORTHO05D008263 2.4e-30 136.0 110 62.7
Medtr1g095920 Medicago truncatula HOM05D006497 ORTHO05D008263 3.1e-30 135.6 124 56.5
A03p61670 Brassica napus HOM05D006497 ORTHO05D008263 5.3e-30 134.8 93 66.7
BraA03t15206Z Brassica rapa HOM05D006497 ORTHO05D008263 5.3e-30 134.8 93 66.7
TPR.G1790 Trifolium pratense HOM05D006497 ORTHO05D008263 5.3e-30 134.8 97 69.1
Glyma.20G177400 Glycine max HOM05D006497 ORTHO05D008263 6.9e-30 134.4 141 50.4
Glyma.10G214200 Glycine max HOM05D006497 ORTHO05D008263 1.2e-29 133.7 148 51.4
Psat6g186080 Pisum sativum HOM05D006497 ORTHO05D008263 2.0e-29 132.9 98 65.3
ATR0304G027 Amborella trichopoda HOM05D006497 ORTHO05D008263 2.6e-29 132.5 97 68.0
Lj5g0021165 Lotus japonicus HOM05D006497 ORTHO05D008263 2.6e-29 132.5 147 53.7
Lalb_Chr06g0162131 Lupinus albus HOM05D006497 ORTHO05D008263 4.5e-29 131.7 93 67.7
HPP92_013944 Vanilla planifolia HOM05D006497 ORTHO05D008263 1.0e-28 130.6 99 61.6
C07p59400 Brassica napus HOM05D006497 ORTHO05D008263 1.7e-28 129.8 93 64.5
Oeu011793.1 Olea europaea HOM05D006497 ORTHO05D008263 2.2e-28 129.4 126 54.8
Zm00001eb218450 Zea mays HOM05D006497 ORTHO05D008263 2.9e-28 129.0 124 54.8
Aa31LG2G18050 Aethionema arabicum HOM05D006497 ORTHO05D008263 8.5e-28 127.5 92 64.1
SGA_v2.0_scaffold163G38048 Striga asiatica HOM05D006497 ORTHO05D008263 8.5e-28 127.5 182 44.0
Hund19485 Selenicereus undatus HOM05D006497 ORTHO05D008263 2.1e-26 122.9 137 48.9
SEGI_35319 Sequoiadendron giganteum HOM05D006497 ORTHO05D008263 2.1e-26 122.9 95 62.1
FAN27G1249 Fragaria x ananassa HOM05D006497 ORTHO05D008263 6.1e-26 121.3 148 53.4
TWI32G0413 Tripterygium wilfordii HOM05D006497 ORTHO05D008263 3.0e-25 119.0 83 68.7
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 7.4e-24 114.4 223 36.8
HanXRQChr17g0538891 Helianthus annuus HOM05D006497 ORTHO05D008263 2.8e-23 112.5 85 69.4
SGA_v2.0_scaffold169G38673 Striga asiatica HOM05D006497 ORTHO05D008263 6.3e-23 111.3 98 62.2
Manes.03G057500 Manihot esculenta HOM05D006497 ORTHO05D008263 2.0e-21 106.3 106 55.7
Dinv27945 Davidia involucrata HOM05D006497 ORTHO05D008263 2.2e-20 102.8 55 90.9
vmacro08276 Vaccinium macrocarpon HOM05D006497 ORTHO05D008263 2.2e-20 102.8 61 78.7
Mapoly0154s0030 Marchantia polymorpha HOM05D006497 ORTHO05D008263 1.1e-19 100.5 119 44.5
MBI13_g05466_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 1.6e-18 96.7 57 75.4
CBR_g31997 Chara braunii HOM05D006497 ORTHO05D008263 8.0e-18 94.4 101 48.5
Gohir.D07G023800 Gossypium hirsutum HOM05D006497 ORTHO05D008263 1.1e-16 90.5 103 53.4
Pp3c2_33430 Physcomitrium patens HOM05D006497 ORTHO05D008263 1.3e-15 87.0 119 37.8
SMO146G0150 Selaginella moellendorffii HOM05D006497 ORTHO05D008263 9.1e-14 80.9 96 42.7
Cre08.g364650 Chlamydomonas reinhardtii HOM05D001184 ORTHO05D007940 1.7e-12 76.6 92 38.0
Rhsim07G0144900 Rhododendron simsii HOM05D006497 ORTHO05D008263 2.1e-10 69.7 46 69.6
MCO07G547 Micromonas commoda HOM05D001184 ORTHO05D007940 3.0e-09 65.9 95 38.9
PRCOL_00005999 Prasinoderma coloniale HOM05D006497 ORTHO05D008263 6.3e-07 58.2 96 31.2
Actinidia14692 Actinidia chinensis HOM05D001428 ORTHO05D001306 8.2e-07 57.8 132 37.9


User provided reference genes

Program Settings