Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 3.4e-126 454.9 213 100.0
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 2.6e-86 322.4 150 98.7
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 9.3e-84 313.9 150 94.0
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 9.3e-84 313.9 150 93.3
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 1.2e-83 313.5 150 94.0
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 1.6e-83 313.2 150 92.7
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 2.1e-83 312.8 150 93.3
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 2.1e-83 312.8 150 93.3
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 2.1e-83 312.8 150 93.3
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 3.5e-83 312.0 150 93.3
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 4.6e-83 311.6 150 93.3
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 6.0e-83 311.2 147 93.9
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 7.9e-83 310.8 150 92.0
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 1.0e-82 310.5 150 93.3
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.0e-82 310.5 150 92.0
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.0e-82 310.5 150 92.0
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.0e-82 310.5 150 92.0
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 1.0e-82 310.5 150 92.7
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 1.3e-82 310.1 150 92.0
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.8e-82 309.7 150 91.3
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 1.8e-82 309.7 150 90.7
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 1.8e-82 309.7 150 91.3
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 2.3e-82 309.3 150 90.7
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 2.3e-82 309.3 150 92.7
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 2.3e-82 309.3 150 91.3
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 2.3e-82 309.3 150 92.7
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 3.0e-82 308.9 150 92.0
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 3.0e-82 308.9 147 93.2
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 3.0e-82 308.9 150 91.3
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 3.9e-82 308.5 150 91.3
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 5.1e-82 308.1 150 90.0
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 8.7e-82 307.4 150 91.3
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 8.7e-82 307.4 150 90.0
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 1.1e-81 307.0 150 89.3
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 1.1e-81 307.0 150 89.3
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 1.1e-81 307.0 150 90.7
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 1.1e-81 307.0 149 91.3
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 1.5e-81 306.6 150 90.0
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 1.5e-81 306.6 150 90.0
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 1.9e-81 306.2 150 91.3
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 1.9e-81 306.2 150 90.7
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 1.9e-81 306.2 150 90.0
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 2.5e-81 305.8 149 89.9
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 2.5e-81 305.8 150 90.0
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 2.5e-81 305.8 150 90.7
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 2.5e-81 305.8 150 90.7
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 2.5e-81 305.8 150 90.7
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 2.5e-81 305.8 150 89.3
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 3.3e-81 305.4 150 90.7
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 3.3e-81 305.4 149 90.6
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 3.3e-81 305.4 149 89.9
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 4.3e-81 305.1 150 90.7
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 4.3e-81 305.1 150 90.0
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 4.3e-81 305.1 150 90.0
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 4.3e-81 305.1 150 90.0
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 4.3e-81 305.1 150 90.0
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 4.3e-81 305.1 150 90.0
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 4.3e-81 305.1 150 90.0
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 4.3e-81 305.1 149 89.3
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 5.7e-81 304.7 150 88.7
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 5.7e-81 304.7 150 88.7
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 5.7e-81 304.7 150 90.7
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 5.7e-81 304.7 150 90.7
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 7.4e-81 304.3 150 89.3
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 7.4e-81 304.3 150 91.3
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 7.4e-81 304.3 150 89.3
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 7.4e-81 304.3 150 89.3
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 9.6e-81 303.9 149 88.6
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 9.6e-81 303.9 150 89.3
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 9.6e-81 303.9 150 89.3
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 9.6e-81 303.9 150 89.3
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 9.6e-81 303.9 150 89.3
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 9.6e-81 303.9 150 89.3
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 9.6e-81 303.9 150 89.3
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 9.6e-81 303.9 150 90.0
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 1.3e-80 303.5 150 88.7
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 1.3e-80 303.5 148 90.5
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 1.3e-80 303.5 150 88.0
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 1.3e-80 303.5 150 90.0
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 1.3e-80 303.5 150 88.7
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 1.6e-80 303.1 150 89.3
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 1.6e-80 303.1 150 88.7
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 1.6e-80 303.1 150 90.0
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 1.6e-80 303.1 148 89.9
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 2.1e-80 302.8 147 89.8
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 2.1e-80 302.8 147 89.8
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 2.1e-80 302.8 150 89.3
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 2.8e-80 302.4 150 88.7
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.8e-80 302.4 150 88.0
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.8e-80 302.4 150 88.0
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 2.8e-80 302.4 150 90.0
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 4.8e-80 301.6 150 88.7
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 4.8e-80 301.6 149 87.9
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 4.8e-80 301.6 149 87.9
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 4.8e-80 301.6 150 89.3
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 6.2e-80 301.2 149 89.3
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 6.2e-80 301.2 150 88.7
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 8.2e-80 300.8 150 88.7
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 1.4e-79 300.1 148 89.2
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 1.8e-79 299.7 150 88.0
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 3.1e-79 298.9 150 88.7
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 4.1e-79 298.5 149 91.3
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 9.0e-79 297.4 150 86.7
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 1.5e-78 296.6 150 88.7
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 1.5e-78 296.6 142 89.4
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 2.6e-78 295.8 150 87.3
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 3.8e-77 292.0 150 86.7
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 1.9e-76 289.7 148 87.8
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 5.5e-76 288.1 150 88.0
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 2.1e-75 286.2 150 86.0
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 9.7e-73 277.3 150 83.3
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 1.3e-72 276.9 149 80.5
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 2.8e-72 275.8 219 62.1
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 1.1e-71 273.9 149 78.5
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 3.1e-71 272.3 146 82.2
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 2.1e-67 259.6 148 77.0
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 4.6e-67 258.5 150 76.7
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 6.3e-64 248.1 140 74.3
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 8.2e-64 247.7 156 76.3
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 3.2e-60 235.7 145 77.9
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 2.3e-58 229.6 136 73.5
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 8.8e-58 227.6 106 93.4
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 2.6e-57 226.1 107 90.7
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 1.7e-56 223.4 119 82.4
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.4e-55 220.3 106 89.6
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 3.3e-49 199.1 100 89.0
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 1.8e-47 193.4 100 87.0
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 7.0e-47 191.4 99 88.9
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 1.6e-46 190.3 147 54.4
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 3.2e-44 182.6 143 66.4
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 8.0e-43 177.9 87 88.5
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 2.6e-41 172.9 100 76.0
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 2.2e-40 169.9 87 83.9
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 9.1e-39 164.5 89 83.1
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 2.5e-36 156.4 88 78.4
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 2.8e-32 142.9 109 62.4
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 1.2e-30 137.5 114 61.4
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 3.5e-30 136.0 66 89.4
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 3.6e-27 125.9 66 84.8
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 9.2e-23 111.3 92 55.4
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 3.9e-21 105.9 138 45.7


User provided reference genes

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