Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.2e-159 566.6 326 100.0
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 2.6e-138 495.7 331 86.4
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 5.5e-136 488.0 331 85.2
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 7.7e-130 467.6 330 81.8
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.4e-123 446.8 331 73.7
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 2.7e-90 336.3 325 56.0
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 3.3e-88 329.3 329 61.1
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.2e-87 327.4 322 55.6
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 6.8e-86 321.6 331 58.6
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 1.2e-85 320.9 329 52.9
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 8.4e-84 314.7 329 57.8
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.9e-83 313.5 329 57.4
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.4e-83 313.2 329 58.1
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 9.2e-83 311.2 327 52.3
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 1.2e-82 310.8 329 52.0
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 1.2e-82 310.8 331 58.6
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.2e-82 310.8 332 59.0
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 1.0e-81 307.8 331 57.7
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 3.9e-81 305.8 332 61.4
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 7.3e-80 301.6 331 56.2
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.7e-79 298.9 323 51.1
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 8.1e-79 298.1 323 50.8
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.8e-78 297.0 323 50.8
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.4e-77 292.7 335 51.6
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 4.4e-77 292.4 331 51.7
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 7.6e-77 291.6 332 57.8
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 1.7e-76 290.4 333 51.7
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.9e-76 289.7 333 58.6
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 1.4e-75 287.3 337 58.2
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 3.2e-75 286.2 332 52.7
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 4.2e-75 285.8 332 50.9
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 7.8e-74 281.6 327 50.5
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 1.7e-73 280.4 384 45.8
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.7e-73 280.4 330 51.2
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 5.1e-73 278.9 328 50.3
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.5e-72 277.3 332 47.6
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 1.9e-72 276.9 327 50.2
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 5.6e-72 275.4 333 47.1
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 9.6e-72 274.6 332 48.5
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 2.1e-71 273.5 331 45.9
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 8.1e-71 271.6 333 47.4
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 9.0e-70 268.1 331 51.4
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 1.5e-69 267.3 332 50.9
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 5.8e-69 265.4 333 55.6
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 7.6e-69 265.0 339 50.4
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 6.4e-68 261.9 333 49.8
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 8.4e-68 261.5 331 47.4
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 4.2e-67 259.2 332 50.3
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 9.3e-67 258.1 337 48.4
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 3.5e-66 256.1 284 58.8
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 6.0e-66 255.4 295 56.6
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.3e-65 253.4 330 47.6
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 3.0e-65 253.1 331 45.9
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 3.0e-65 253.1 333 46.2
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 5.1e-65 252.3 333 50.2
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 8.7e-65 251.5 332 43.7
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 4.3e-64 249.2 335 47.5
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 7.4e-64 248.4 320 52.8
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 3.7e-63 246.1 333 46.2
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 5.3e-62 242.3 331 50.8
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 1.5e-61 240.7 331 45.9
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.4e-61 239.6 332 54.2
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 5.8e-61 238.8 331 45.6
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 5.8e-61 238.8 331 43.5
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 5.8e-61 238.8 332 54.2
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 5.8e-61 238.8 331 45.9
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 7.6e-61 238.4 319 47.3
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 8.4e-60 235.0 330 50.9
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 8.4e-60 235.0 403 42.7
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.1e-59 234.6 340 53.5
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.4e-59 234.2 334 45.5
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.9e-59 233.8 333 43.8
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 2.4e-59 233.4 328 49.7
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 3.2e-59 233.0 388 40.7
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 7.9e-58 228.4 331 44.1
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 1.3e-57 227.6 332 47.9
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.5e-56 224.2 333 49.8
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.5e-56 224.2 333 49.8
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 2.5e-56 223.4 328 46.3
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 4.3e-56 222.6 323 45.8
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 5.6e-56 222.2 333 46.2
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.1e-55 220.3 328 43.3
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 6.9e-54 215.3 326 42.6
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 2.6e-53 213.4 322 43.5
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.6e-53 213.4 323 48.6
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 3.4e-53 213.0 388 38.7
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.0e-52 211.5 336 46.4
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 1.0e-52 211.5 330 43.9
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 2.9e-52 209.9 389 46.8
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.6e-50 204.1 322 43.2
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 3.5e-50 203.0 333 43.2
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 7.9e-50 201.8 328 45.4
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 6.7e-49 198.7 327 40.4
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.9e-48 197.2 330 47.0
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 2.5e-48 196.8 307 41.4
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 9.7e-48 194.9 339 40.1
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 1.6e-47 194.1 310 41.6
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 2.2e-47 193.7 334 47.0
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 6.3e-47 192.2 264 44.3
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 1.1e-46 191.4 295 46.1
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 1.8e-46 190.7 334 46.7
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.8e-46 190.7 292 46.9
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 3.1e-46 189.9 371 36.7
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 5.3e-46 189.1 333 44.1
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 9.0e-46 188.3 331 46.5
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 1.2e-45 188.0 283 40.6
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 3.4e-45 186.4 304 44.7
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 4.5e-45 186.0 291 48.1
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 7.6e-45 185.3 272 46.0
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 1.0e-44 184.9 363 43.5
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 3.2e-43 179.9 363 36.6
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 7.2e-43 178.7 349 39.0
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 9.4e-43 178.3 338 36.1
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 4.6e-42 176.0 305 45.6
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 2.3e-41 173.7 305 44.9
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 2.3e-41 173.7 122 70.5
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 3.0e-41 173.3 308 42.9
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 2.5e-40 170.2 334 36.5
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 4.3e-40 169.5 331 36.0
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 4.3e-40 169.5 278 38.8
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 5.7e-40 169.1 380 33.9
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.7e-39 167.5 324 37.7
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.7e-39 167.5 324 37.7
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 4.8e-39 166.0 363 34.7
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.1e-38 164.9 329 40.1
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.4e-38 163.7 306 37.3
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 3.1e-38 163.3 389 33.9
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.1e-38 163.3 303 44.2
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 3.1e-38 163.3 123 65.0
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 2.9e-36 156.8 195 46.7
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.2e-34 151.4 262 45.8
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.2e-34 151.4 263 45.2
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.7e-34 150.2 304 42.8
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 3.6e-34 149.8 206 41.3
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 6.7e-33 145.6 126 57.1
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 2.0e-32 144.1 293 35.5
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-31 141.0 151 55.0
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.8e-30 137.5 316 34.8
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.3e-30 136.0 154 46.8
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.3e-30 136.0 154 46.8
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 3.4e-29 133.3 139 51.1
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 1.0e-28 131.7 124 55.6
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 5.0e-28 129.4 124 48.4
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 8.5e-28 128.6 326 30.4
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.1e-27 128.3 309 32.7
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.5e-27 127.1 191 39.8
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 4.2e-27 126.3 263 41.8
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 3.3e-24 116.7 193 42.5
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 9.1e-22 108.6 247 33.2
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 2.6e-21 107.1 173 41.6
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 1.3e-20 104.8 230 34.8
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.7e-20 104.4 181 42.0
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.5e-19 101.3 279 31.9
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 2.1e-18 97.4 220 31.8
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 3.6e-18 96.7 84 57.1
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 3.0e-17 93.6 174 43.1
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 3.0e-17 93.6 269 37.2
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 4.0e-17 93.2 132 49.2
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 6.7e-17 92.4 131 48.9
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 7.5e-16 89.0 99 47.5
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 9.7e-16 88.6 99 51.5
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 1.7e-15 87.8 287 30.7
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.7e-15 87.8 188 31.4
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 3.7e-15 86.7 124 41.1
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 3.7e-15 86.7 124 41.1
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.7e-13 80.5 48 75.0
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 7.2e-11 72.4 141 39.0
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 2.1e-10 70.9 60 58.3
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 6.1e-10 69.3 270 28.9
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 8.0e-10 68.9 51 64.7
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 5.2e-09 66.2 86 40.7
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 2.2e-07 60.8 327 24.5
Pp3c4_27130 Physcomitrium patens HOM05D019185 ORTHO05D030113 1.1e-06 58.5 85 37.6


User provided reference genes

Program Settings