Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 4.1e-78 294.7 149 100.0
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.6e-77 292.7 149 98.7
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 1.3e-76 289.7 149 98.0
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 3.7e-71 271.6 149 89.9
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 2.9e-60 235.3 147 76.9
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 2.5e-59 232.3 150 75.3
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 9.5e-59 230.3 150 74.0
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 9.5e-59 230.3 150 74.0
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 9.5e-59 230.3 150 74.0
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 1.2e-58 229.9 150 74.7
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 6.1e-58 227.6 150 76.0
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 8.0e-58 227.3 149 73.2
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 8.0e-58 227.3 150 72.7
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.8e-57 226.1 150 72.7
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.8e-57 226.1 150 72.7
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.8e-57 226.1 149 72.5
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 2.3e-57 225.7 150 72.7
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 2.3e-57 225.7 150 74.7
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 2.3e-57 225.7 149 73.8
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.0e-57 225.3 150 72.0
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 4.0e-57 224.9 150 72.7
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 5.2e-57 224.6 150 72.0
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 6.8e-57 224.2 150 74.0
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 8.9e-57 223.8 150 72.0
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 1.2e-56 223.4 148 72.3
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.6e-56 222.2 150 70.7
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 2.6e-56 222.2 151 73.5
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 2.6e-56 222.2 150 72.7
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 4.4e-56 221.5 150 74.0
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 5.7e-56 221.1 146 73.3
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 5.7e-56 221.1 150 72.7
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 7.5e-56 220.7 150 72.0
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 1.3e-55 219.9 151 72.2
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.2e-55 219.2 149 69.8
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 73.3
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 2.9e-55 218.8 150 71.3
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 3.7e-55 218.4 150 71.3
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 3.7e-55 218.4 150 70.7
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 6.4e-55 217.6 151 71.5
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 6.4e-55 217.6 150 68.0
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 8.3e-55 217.2 148 69.6
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.1e-54 216.9 162 67.3
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.1e-54 216.9 148 69.6
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.8e-54 216.1 149 69.1
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.8e-54 216.1 148 70.3
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 3.2e-54 215.3 150 71.3
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 3.2e-54 215.3 150 68.7
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 4.1e-54 214.9 150 70.0
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 4.1e-54 214.9 150 70.0
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 4.1e-54 214.9 146 72.6
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 5.4e-54 214.5 147 72.1
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 5.4e-54 214.5 150 70.0
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 7.0e-54 214.2 146 69.2
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.2e-53 213.4 148 69.6
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 70.7
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 1.6e-53 213.0 151 67.5
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 67.3
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 67.3
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.0e-53 212.6 150 68.0
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.7e-53 212.2 150 68.0
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 3.5e-53 211.8 146 68.5
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 3.5e-53 211.8 146 71.2
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 4.6e-53 211.5 146 71.9
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 6.0e-53 211.1 150 66.7
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.0e-52 210.3 150 69.3
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 1.0e-52 210.3 150 68.7
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.7e-52 209.5 149 67.8
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 2.3e-52 209.1 148 70.3
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 2.3e-52 209.1 144 71.5
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.3e-52 209.1 145 71.0
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.3e-52 209.1 145 71.0
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.3e-52 209.1 144 71.5
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.3e-52 209.1 144 71.5
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 3.9e-52 208.4 148 68.2
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 5.0e-52 208.0 150 68.7
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.0e-52 208.0 144 70.8
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.6e-52 207.6 144 70.8
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 6.6e-52 207.6 146 67.8
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 8.6e-52 207.2 149 67.8
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 8.6e-52 207.2 147 68.0
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 8.6e-52 207.2 147 67.3
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 8.6e-52 207.2 146 66.4
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.1e-51 206.8 150 68.0
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.1e-51 206.8 146 68.5
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.5e-51 206.5 181 59.1
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 1.9e-51 206.1 157 64.3
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.9e-51 206.1 146 66.4
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.9e-51 206.1 147 69.4
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 3.3e-51 205.3 148 64.9
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 5.6e-51 204.5 144 69.4
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 5.6e-51 204.5 150 66.0
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 5.6e-51 204.5 150 68.0
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 5.6e-51 204.5 150 66.0
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 5.6e-51 204.5 150 65.3
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 7.3e-51 204.1 134 72.4
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 7.3e-51 204.1 143 67.8
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.6e-50 203.0 150 68.0
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 3.6e-50 201.8 160 61.9
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 6.2e-50 201.1 150 66.7
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 6.2e-50 201.1 150 64.7
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 1.1e-49 200.3 161 61.5
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.4e-49 199.9 146 67.1
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 4.0e-49 198.4 150 64.0
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 8.9e-49 197.2 147 65.3
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.5e-48 196.4 149 64.4
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.5e-48 196.4 147 67.3
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 2.0e-48 196.1 148 64.2
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 9.8e-48 193.7 147 63.3
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 9.8e-48 193.7 161 60.2
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 4.9e-47 191.4 149 61.7
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 8.3e-47 190.7 150 64.7
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 4.1e-46 188.3 150 60.0
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.6e-45 186.4 143 62.9
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 6.0e-45 184.5 170 58.8
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.7e-44 183.0 222 47.3
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 3.9e-44 181.8 142 62.0
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.5e-43 179.9 135 63.0
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 2.5e-43 179.1 148 60.8
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 3.3e-43 178.7 193 51.8
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 5.6e-43 177.9 149 60.4
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.2e-42 176.8 152 57.9
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 2.1e-42 176.0 148 63.5
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 8.1e-42 174.1 142 60.6
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.4e-41 173.3 143 57.3
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.3e-41 172.6 144 59.0
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 2.3e-41 172.6 150 54.7
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 2.3e-41 172.6 150 54.7
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 4.0e-41 171.8 140 57.1
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 6.8e-41 171.0 143 57.3
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 8.9e-41 170.6 142 62.7
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 2.6e-40 169.1 143 55.9
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 2.6e-40 169.1 143 55.9
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 2.6e-40 169.1 143 55.9
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 3.7e-39 165.2 148 55.4
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 4.9e-39 164.9 143 55.2
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.1e-38 163.7 141 55.3
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.4e-38 163.3 143 53.8
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 1.2e-37 160.2 107 72.0
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 6.0e-37 157.9 148 55.4
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 2.5e-35 152.5 129 60.5
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 2.5e-35 152.5 129 60.5
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 4.3e-35 151.8 151 55.0
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 1.2e-34 150.2 108 65.7
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 4.7e-34 148.3 108 65.7
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 4.7e-34 148.3 108 65.7
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 6.2e-34 147.9 143 51.7
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.1e-33 147.1 99 70.7
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.5e-32 143.3 89 74.2
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 7.6e-32 141.0 103 67.0
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 7.1e-30 134.4 142 47.9
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 9.2e-30 134.0 133 54.1
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.0e-28 130.6 89 70.8
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.7e-28 129.8 105 59.0
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.7e-28 129.8 89 70.8
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 1.6e-26 123.2 148 45.9
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 6.9e-25 117.9 80 66.2
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 2.4e-22 109.4 132 40.2
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 2.4e-22 109.4 86 55.8
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 4.2e-22 108.6 91 54.9
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.6e-21 106.7 103 49.5
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 2.3e-20 102.8 142 40.8
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 6.6e-20 101.3 138 36.2
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 9.0e-17 90.9 73 60.3
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.4e-16 89.0 136 30.1
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 1.4e-14 83.6 52 73.1
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.2e-13 80.5 147 28.6
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 7.9e-13 77.8 102 42.2
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.0e-12 77.4 80 48.8
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.3e-12 77.0 104 32.7
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 3.0e-12 75.9 87 44.8
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 1.9e-11 73.2 44 72.7
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 2.1e-10 69.7 137 27.0
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 2.0e-08 63.2 140 25.7
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 2.9e-07 59.3 134 26.9
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.1e-06 57.4 46 54.3
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.2e-06 55.8 80 40.0


User provided reference genes

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