Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G013540 Citrullus lanatus HOM05D007605 ORTHO05D009572 5.9e-100 367.5 177 100.0
MELO3C011854.2 Cucumis melo HOM05D007605 ORTHO05D009572 1.5e-18 97.1 51 94.1
Sed0018718 Sechium edule HOM05D007605 ORTHO05D009572 1.3e-17 94.0 52 88.5
CiPaw.01G168900 Carya illinoinensis HOM05D007605 ORTHO05D009572 2.4e-16 89.7 52 82.7
CsaV3_5G030160 Cucumis sativus L. HOM05D007605 ORTHO05D009572 6.9e-16 88.2 46 93.5
Nn1g09550 Nelumbo nucifera HOM05D007605 ORTHO05D009572 2.6e-15 86.3 54 75.9
RcHm_v2.0_Chr4g0405791 Rosa chinensis HOM05D007605 ORTHO05D009572 2.6e-15 86.3 51 80.4
Eucgr.H04449 Eucalyptus grandis HOM05D007605 ORTHO05D009572 3.4e-15 85.9 51 82.4
CANSAT01G0287 Cannabis sativa HOM05D007605 ORTHO05D009572 4.5e-15 85.5 50 82.0
Cfa015674 Carpinus fangiana HOM05D007605 ORTHO05D009572 4.5e-15 85.5 50 82.0
Haze_00851 Corylus avellana HOM05D007605 ORTHO05D009572 4.5e-15 85.5 50 82.0
SGA_v2.0_scaffold25G11005 Striga asiatica HOM05D000384 ORTHO05D009572 5.8e-15 85.1 52 76.9
Lalb_Chr04g0257371 Lupinus albus HOM05D007605 ORTHO05D009572 7.6e-15 84.7 49 83.7
Cpa.g.sc9.378 Carica papaya HOM05D007605 ORTHO05D009572 1.0e-14 84.3 50 82.0
Medtr7g091060 Medicago truncatula HOM05D007605 ORTHO05D009572 1.0e-14 84.3 51 78.4
Carub.0004s2631 Capsella rubella HOM05D007605 ORTHO05D009572 1.3e-14 84.0 46 87.0
Ca_08431_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 1.3e-14 84.0 52 76.9
Ca_14651_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 1.3e-14 84.0 52 76.9
Atru.chr4.1455 Acer truncatum HOM05D007605 ORTHO05D009572 1.7e-14 83.6 50 78.0
DCAR_030842 Daucus carota HOM05D007605 ORTHO05D009572 1.7e-14 83.6 50 80.0
CSS0027032 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 2.2e-14 83.2 51 80.4
CSS0028313 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 2.2e-14 83.2 51 80.4
Rhsim09G0008600 Rhododendron simsii HOM05D007605 ORTHO05D009572 2.2e-14 83.2 50 80.0
Duzib212G0337 Durio zibethinus HOM05D007605 ORTHO05D009572 2.9e-14 82.8 49 81.6
TWI63G1406 Tripterygium wilfordii HOM05D007605 ORTHO05D009572 2.9e-14 82.8 50 80.0
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 2.9e-14 82.8 52 76.9
AL4G42650 Arabidopsis lyrata HOM05D007605 ORTHO05D009572 3.8e-14 82.4 46 87.0
Sc13g0006890 Simmondsia chinensis HOM05D007605 ORTHO05D009572 3.8e-14 82.4 50 82.0
Atru.chr12.2308 Acer truncatum HOM05D007605 ORTHO05D009572 5.0e-14 82.0 50 76.0
Migut.N03059 Erythranthe guttata HOM05D007605 ORTHO05D009572 5.0e-14 82.0 48 81.2
Glyma.18G297600 Glycine max HOM05D007605 ORTHO05D009572 5.0e-14 82.0 52 76.9
Manes.05G136900 Manihot esculenta HOM05D007605 ORTHO05D009572 5.0e-14 82.0 50 78.0
Manes.08G010900 Manihot esculenta HOM05D007605 ORTHO05D009572 5.0e-14 82.0 50 78.0
Potri.019G096500 Populus trichocarpa HOM05D007605 ORTHO05D009572 5.0e-14 82.0 50 78.0
Potri.019G096700 Populus trichocarpa HOM05D007605 ORTHO05D009572 5.0e-14 82.0 50 78.0
Sp4g25850 Schrenkiella parvula HOM05D007605 ORTHO05D009572 5.0e-14 82.0 46 84.8
TPR.G18242 Trifolium pratense HOM05D007605 ORTHO05D009572 5.0e-14 82.0 50 78.0
CARHR138960 Cardamine hirsuta HOM05D007605 ORTHO05D009572 6.5e-14 81.6 46 82.6
Ciclev10023247m.g Citrus clementina HOM05D007605 ORTHO05D009572 6.5e-14 81.6 50 76.0
AT2G43780 Arabidopsis thaliana HOM05D007605 ORTHO05D009572 8.4e-14 81.3 46 87.0
arahy.Tifrunner.gnm1.ann1.FBG7WK Arachis hypogaea HOM05D007605 ORTHO05D009572 8.4e-14 81.3 52 75.0
arahy.Tifrunner.gnm1.ann1.MPL0H7 Arachis hypogaea HOM05D007605 ORTHO05D009572 8.4e-14 81.3 52 75.0
PSO573G0041 Papaver somniferum HOM05D007605 ORTHO05D009572 8.4e-14 81.3 50 78.0
Peaxi162Scf00579g00018 Petunia axillaris HOM05D007605 ORTHO05D009572 8.4e-14 81.3 51 76.5
RcHm_v2.0_Chr7g0232231 Rosa chinensis HOM05D007605 ORTHO05D009572 8.4e-14 81.3 51 76.5
Sabra13G0106700 Salix brachista HOM05D007605 ORTHO05D009572 8.4e-14 81.3 47 80.9
SalBow6G4154 Salvia bowleyana HOM05D007605 ORTHO05D009572 8.4e-14 81.3 52 76.9
ECA248G2718 Erigeron canadensis HOM05D007605 ORTHO05D009572 1.1e-13 80.9 46 82.6
FAN05G0946 Fragaria x ananassa HOM05D007605 ORTHO05D009572 1.1e-13 80.9 49 77.6
FAN05G3507 Fragaria x ananassa HOM05D007605 ORTHO05D009572 1.1e-13 80.9 49 77.6
Thecc.04G164300 Theobroma cacao HOM05D007605 ORTHO05D009572 1.1e-13 80.9 49 79.6
Ah.07g202920 Amaranthus hybridus HOM05D007605 ORTHO05D009572 1.4e-13 80.5 46 82.6
BcaB01g03362 Brassica carinata HOM05D007605 ORTHO05D009572 1.4e-13 80.5 46 84.8
Glyma.08G364500 Glycine max HOM05D007605 ORTHO05D009572 1.4e-13 80.5 49 79.6
MD03G1210800 Malus domestica HOM05D007605 ORTHO05D009572 1.4e-13 80.5 52 73.1
Psat3g074320 Pisum sativum HOM05D007605 ORTHO05D009572 1.4e-13 80.5 50 74.0
Prupe.4G204500 Prunus persica HOM05D007605 ORTHO05D009572 1.4e-13 80.5 52 73.1
PGR142G0642 Punica granatum HOM05D007605 ORTHO05D009572 1.4e-13 80.5 50 74.0
Aqoxy4G02871 Aquilegia oxysepala HOM05D007605 ORTHO05D009572 1.9e-13 80.1 43 86.0
FvH4_6g21131 Fragaria vesca HOM05D007605 ORTHO05D009572 1.9e-13 80.1 46 80.4
FAN14G0446 Fragaria x ananassa HOM05D007605 ORTHO05D009572 1.9e-13 80.1 46 80.4
Lj1g0002800 Lotus japonicus HOM05D007605 ORTHO05D009572 1.9e-13 80.1 50 78.0
Lj1g0021920 Lotus japonicus HOM05D007605 ORTHO05D009572 1.9e-13 80.1 50 78.0
Lj6g0006319 Lotus japonicus HOM05D007605 ORTHO05D009572 1.9e-13 80.1 50 78.0
Lj6g0016727 Lotus japonicus HOM05D007605 ORTHO05D009572 1.9e-13 80.1 50 78.0
MBI07_g11492_MAGBIO Magnolia biondii HOM05D007605 ORTHO05D009572 1.9e-13 80.1 50 76.0
Nitab4.5_0004700g0030 Nicotiana tabacum HOM05D001130 ORTHO05D001052 1.9e-13 80.1 50 76.0
Nitab4.5_0007474g0060 Nicotiana tabacum HOM05D007605 ORTHO05D009572 1.9e-13 80.1 50 76.0
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 1.9e-13 80.1 50 76.0
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 2.5e-13 79.7 46 84.8
AUR62002411 Chenopodium quinoa HOM05D007605 ORTHO05D009572 2.5e-13 79.7 46 82.6
Gohir.A10G144600 Gossypium hirsutum HOM05D007605 ORTHO05D009572 2.5e-13 79.7 49 79.6
BcaC01g05214 Brassica carinata HOM05D007605 ORTHO05D009572 3.2e-13 79.3 46 82.6
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 3.2e-13 79.3 46 82.6
C03p29150 Brassica napus HOM05D007605 ORTHO05D009572 3.2e-13 79.3 46 82.6
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 3.2e-13 79.3 46 82.6
BolC3t15267H Brassica oleracea HOM05D007605 ORTHO05D009572 3.2e-13 79.3 46 82.6
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 3.2e-13 79.3 46 82.6
MD11G1225700 Malus domestica HOM05D007605 ORTHO05D009572 3.2e-13 79.3 51 74.5
Sopen06g018580 Solanum pennellii HOM05D007605 ORTHO05D009572 3.2e-13 79.3 50 76.0
COL.COLO4_38114 Corchorus olitorius HOM05D007605 ORTHO05D009572 4.2e-13 79.0 46 82.6
Lsat_1_v5_gn_1_21060 Lactuca sativa HOM05D007605 ORTHO05D009572 4.2e-13 79.0 46 80.4
Thhalv10001711m.g Eutrema salsugineum HOM05D007605 ORTHO05D009572 5.5e-13 78.6 49 79.6
THA.LOC104802329 Tarenaya hassleriana HOM05D007605 ORTHO05D009572 5.5e-13 78.6 46 82.6
EL10Ac3g06103 Beta vulgaris HOM05D007605 ORTHO05D009572 7.2e-13 78.2 54 68.5
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 7.2e-13 78.2 46 82.6
BcaB05g23281 Brassica carinata HOM05D007605 ORTHO05D009572 7.2e-13 78.2 46 80.4
A03p24460 Brassica napus HOM05D007605 ORTHO05D009572 7.2e-13 78.2 46 82.6
BraA03t11655Z Brassica rapa HOM05D007605 ORTHO05D009572 7.2e-13 78.2 46 82.6
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 9.3e-13 77.8 46 80.4
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 9.3e-13 77.8 46 80.4
Os12g0611700 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 9.3e-13 77.8 60 66.7
PGSC0003DMG400016297 Solanum tuberosum HOM05D007605 ORTHO05D009572 9.3e-13 77.8 50 74.0
Gohir.D10G122400 Gossypium hirsutum HOM05D007605 ORTHO05D009572 1.2e-12 77.4 49 77.6
Gorai.011G134700 Gossypium raimondii HOM05D007605 ORTHO05D009572 1.2e-12 77.4 49 77.6
Phvul.008G005000 Phaseolus vulgaris HOM05D007605 ORTHO05D009572 1.2e-12 77.4 52 71.2
Os05g0103800 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 1.6e-12 77.0 62 64.5
ATR0743G065 Amborella trichopoda HOM05D007605 ORTHO05D009572 2.7e-12 76.3 51 68.6
Glyma.19G073500 Glycine max HOM05D007605 ORTHO05D009572 4.6e-12 75.5 49 73.5
Lj6C218G0 Lonicera japonica HOM05D000384 ORTHO05D000468 5.1e-11 72.0 41 80.5
GSVIVG01038176001 Vitis vinifera HOM05D007605 ORTHO05D009572 5.1e-11 72.0 51 68.6
Lsat_1_v5_gn_1_74540 Lactuca sativa HOM05D007605 ORTHO05D009572 8.7e-11 71.2 48 70.8
QL10p056550 Quercus lobata HOM05D007605 ORTHO05D009572 1.5e-10 70.5 47 74.5
vmacro23387 Vaccinium macrocarpon HOM05D007605 ORTHO05D009572 4.3e-10 68.9 39 82.1
Glyma.19G030600 Glycine max HOM05D007605 ORTHO05D009572 1.3e-09 67.4 49 69.4
Mapoly0044s0040 Marchantia polymorpha HOM05D007605 ORTHO05D009572 1.1e-08 64.3 46 65.2
BcaC05g29066 Brassica carinata HOM05D007605 ORTHO05D009572 2.4e-08 63.2 37 78.4
Pp3c9_12740 Physcomitrium patens HOM05D007605 ORTHO05D009572 5.3e-08 62.0 46 63.0
Glyma.17G205632 Glycine max HOM05D007605 ORTHO05D009572 6.9e-08 61.6 54 57.4


User provided reference genes

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