Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 6.6e-59 230.7 135 100.0
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 1.3e-43 179.9 135 85.2
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 1.6e-41 172.9 135 83.0
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 1.8e-32 142.9 136 61.8
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 1.4e-16 90.1 134 53.7
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 2.4e-16 89.4 132 53.0
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 3.1e-16 89.0 135 54.8
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 4.0e-16 88.6 135 53.3
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 3.4e-15 85.5 141 51.1
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 3.4e-15 85.5 141 51.1
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 4.5e-15 85.1 137 48.9
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 9.9e-15 84.0 141 51.1
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 3.8e-14 82.0 132 51.5
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 4.9e-14 81.6 133 48.9
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 6.4e-14 81.3 80 60.0
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 1.1e-13 80.5 131 42.0
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 2.4e-13 79.3 131 41.2
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 4.2e-13 78.6 97 58.8
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 5.5e-13 78.2 79 68.4
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 7.1e-13 77.8 131 48.9
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 9.3e-13 77.4 140 47.1
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 9.3e-13 77.4 134 50.0
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 1.6e-12 76.6 133 53.4
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 3.5e-12 75.5 133 54.1
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 6.0e-12 74.7 147 48.3
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 6.0e-12 74.7 135 45.9
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 1.0e-11 73.9 77 64.9
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 1.0e-11 73.9 131 45.8
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 1.8e-11 73.2 138 47.1
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 2.3e-11 72.8 138 47.1
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 2.3e-11 72.8 79 64.6
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 2.3e-11 72.8 134 50.0
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 3.0e-11 72.4 135 48.1
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 3.9e-11 72.0 84 64.3
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 3.9e-11 72.0 131 48.1
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 5.1e-11 71.6 94 59.6
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 5.1e-11 71.6 129 51.9
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 5.1e-11 71.6 89 56.2
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 5.1e-11 71.6 143 49.0
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 6.7e-11 71.2 139 47.5
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 1.5e-10 70.1 108 49.1
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 1.5e-10 70.1 136 41.9
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 1.5e-10 70.1 81 67.9
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 1.5e-10 70.1 137 51.1
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 1.9e-10 69.7 130 50.0
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 1.9e-10 69.7 99 59.6
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 1.9e-10 69.7 135 46.7
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 2.5e-10 69.3 81 56.8
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 2.5e-10 69.3 153 47.7
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 2.5e-10 69.3 83 60.2
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 3.3e-10 68.9 90 46.7
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 3.3e-10 68.9 136 40.4
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 3.3e-10 68.9 95 56.8
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 7.4e-10 67.8 103 51.5
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 9.6e-10 67.4 131 46.6
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 9.6e-10 67.4 135 48.9
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 9.6e-10 67.4 72 63.9
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 1.3e-09 67.0 97 44.3
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 1.3e-09 67.0 83 61.4
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 1.6e-09 66.6 112 51.8
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 3.7e-09 65.5 90 55.6
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 4.8e-09 65.1 150 46.7
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 6.2e-09 64.7 135 45.2
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 6.2e-09 64.7 80 60.0
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 1.1e-08 63.9 79 65.8
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 2.4e-08 62.8 132 41.7
Phvul.003G059800 Phaseolus vulgaris HOM05D007607 ORTHO05D009603 2.4e-08 62.8 90 52.2
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 3.1e-08 62.4 78 61.5
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 5.3e-08 61.6 137 43.1
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 5.3e-08 61.6 83 54.2
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 6.9e-08 61.2 142 36.6
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 6.9e-08 61.2 145 40.0
TPR.G23536 Trifolium pratense HOM05D007607 ORTHO05D009603 1.5e-07 60.1 84 61.9
Nn7g37525 Nelumbo nucifera HOM05D007607 ORTHO05D009603 2.6e-07 59.3 44 75.0
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 2.6e-07 59.3 152 45.4
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 3.4e-07 58.9 39 76.9
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 5.8e-07 58.2 38 81.6
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 7.6e-07 57.8 105 53.3
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 7.6e-07 57.8 103 51.5
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 1.0e-06 57.4 77 62.3
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 1.3e-06 57.0 82 58.5
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 1.7e-06 56.6 82 58.5
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 2.2e-06 56.2 75 44.0
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 2.9e-06 55.8 82 59.8
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 2.9e-06 55.8 83 60.2
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 2.9e-06 55.8 83 60.2
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 3.8e-06 55.5 137 45.3
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 3.8e-06 55.5 137 45.3
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 3.8e-06 55.5 77 62.3
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 8.4e-06 54.3 82 58.5
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 8.4e-06 54.3 43 72.1
CARHR021860 Cardamine hirsuta HOM05D007607 ORTHO05D009603 8.4e-06 54.3 135 45.9


User provided reference genes

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