Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 2.2e-188 662.1 333 100.0
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 2.9e-180 635.2 333 96.4
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 6.4e-180 634.0 333 95.8
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 6.2e-175 617.5 320 95.6
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 5.6e-168 594.3 335 88.7
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 7.5e-165 583.9 332 86.7
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 1.7e-164 582.8 332 86.7
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 6.4e-164 580.9 332 86.4
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.4e-163 579.7 332 85.5
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 1.4e-163 579.7 332 86.1
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 2.4e-163 578.9 332 86.1
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.4e-163 578.9 335 85.4
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 3.2e-163 578.6 332 86.1
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.6e-162 576.2 321 88.8
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 2.7e-162 575.5 333 85.6
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 6.0e-162 574.3 328 86.3
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 5.1e-161 571.2 326 85.0
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.5e-160 569.7 332 84.0
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 2.5e-160 568.9 331 85.5
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 7.3e-160 567.4 337 84.3
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 1.6e-159 566.2 328 85.1
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 2.8e-159 565.5 326 84.4
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 3.6e-159 565.1 331 83.7
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 6.2e-159 564.3 333 84.1
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 8.1e-159 563.9 320 85.9
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 1.1e-158 563.5 326 85.3
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 4.0e-158 561.6 328 83.8
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 5.2e-158 561.2 328 82.9
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 6.8e-158 560.8 327 84.7
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.6e-157 558.9 328 82.6
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 3.4e-157 558.5 335 83.3
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 3.4e-157 558.5 329 83.0
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 7.6e-157 557.4 331 82.8
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 9.9e-157 557.0 333 83.8
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 1.3e-156 556.6 372 76.6
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.7e-156 556.2 337 84.9
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 3.8e-156 555.1 324 84.3
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 4.9e-156 554.7 332 82.8
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 1.4e-155 553.1 330 81.8
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 4.2e-155 551.6 320 82.5
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 2.1e-154 549.3 332 81.0
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 2.1e-154 549.3 321 84.7
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 2.7e-154 548.9 340 80.0
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 2.7e-154 548.9 326 84.0
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 4.6e-154 548.1 338 80.8
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 6.0e-154 547.7 326 83.1
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 7.8e-154 547.4 329 81.8
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 1.0e-153 547.0 338 80.5
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.0e-153 547.0 330 81.5
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.0e-153 547.0 329 81.2
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.3e-153 546.6 370 74.1
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 2.3e-153 545.8 329 81.5
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 2.3e-153 545.8 329 81.2
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 5.1e-153 544.7 338 80.2
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 6.6e-153 544.3 329 80.9
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 6.6e-153 544.3 329 81.5
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.7e-153 543.9 335 80.9
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.5e-152 543.1 338 79.9
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.5e-152 543.1 338 79.9
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 1.5e-152 543.1 318 85.5
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 3.3e-152 542.0 325 81.5
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 5.6e-152 541.2 326 81.3
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 5.6e-152 541.2 369 74.5
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 1.6e-151 539.7 328 80.8
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 1.6e-151 539.7 325 83.1
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 2.8e-151 538.9 329 79.9
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 3.6e-151 538.5 329 79.9
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 4.7e-151 538.1 329 79.9
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 8.1e-151 537.3 328 80.2
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 1.1e-150 537.0 320 82.2
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 1.1e-150 537.0 324 82.7
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.1e-150 537.0 324 82.7
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.3e-150 534.6 348 77.9
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 1.2e-149 533.5 334 80.5
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 2.6e-149 532.3 329 79.6
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 4.4e-149 531.6 332 80.1
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 4.4e-149 531.6 333 79.3
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 4.4e-149 531.6 334 79.9
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 5.8e-149 531.2 332 80.4
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 9.9e-149 530.4 330 80.0
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.9e-147 526.2 348 77.3
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 2.4e-147 525.8 403 71.5
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 5.4e-147 524.6 370 71.4
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.2e-146 523.5 320 80.6
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.0e-145 520.4 335 79.1
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 2.3e-145 519.2 333 78.1
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 5.1e-145 518.1 318 82.1
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 8.7e-145 517.3 325 76.9
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 2.1e-143 512.7 305 82.6
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 9.9e-141 503.8 329 75.1
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 1.9e-139 499.6 328 74.7
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 1.3e-137 493.4 340 74.7
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 6.2e-135 484.6 332 74.1
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 4.0e-134 481.9 317 75.4
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.4e-131 473.4 334 71.0
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 2.5e-128 462.6 333 68.8
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 4.0e-126 455.3 343 67.3
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 1.7e-124 449.9 325 69.5
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 2.2e-124 449.5 251 88.4
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 4.2e-123 445.3 318 73.6
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 7.9e-122 441.0 249 86.3
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 5.7e-120 434.9 251 84.5
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 7.4e-120 434.5 251 83.3
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 2.8e-119 432.6 244 85.2
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 7.7e-117 424.5 370 64.1
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 5.0e-116 421.8 333 68.5
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 8.8e-113 411.0 310 68.4
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 8.2e-111 404.4 329 63.8
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 2.0e-109 399.8 246 76.4
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 2.6e-96 356.3 318 59.1
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 3.0e-89 332.8 204 79.9
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 2.6e-88 329.7 232 70.7
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 1.3e-76 290.8 218 71.1
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 2.2e-71 273.5 338 45.9
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 1.2e-66 257.7 197 65.5
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 2.1e-66 256.9 267 49.8
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 2.3e-65 253.4 136 87.5
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 1.4e-62 244.2 302 47.7
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 5.4e-62 242.3 135 83.7
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 7.3e-59 231.9 240 52.1
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 3.4e-56 223.0 128 80.5
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.1e-44 182.6 131 71.0
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 1.5e-43 181.0 131 70.2
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 3.4e-40 169.9 120 70.8
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.4e-40 169.9 124 70.2
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.4e-40 169.9 124 70.2
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 9.9e-40 168.3 135 67.4
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 3.8e-39 166.4 124 68.5
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 1.9e-38 164.1 106 78.3
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-36 157.1 162 50.6
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 8.1e-34 148.7 185 51.4
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 8.1e-34 148.7 107 69.2
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 2.5e-27 127.1 94 69.1
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 6.2e-26 122.5 73 79.5
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 2.9e-23 113.6 179 45.8
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 1.2e-21 108.2 67 83.6
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 1.0e-20 105.1 66 81.8
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 1.8e-20 104.4 80 62.5
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 8.7e-20 102.1 75 66.7
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.5e-19 101.3 61 80.3
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 1.4e-17 94.7 62 75.8
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 5.3e-17 92.8 82 57.3
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 6.5e-15 85.9 204 29.9
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 7.1e-14 82.4 54 79.6
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 5.7e-11 72.8 50 72.0
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 9.6e-11 72.0 51 66.7
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 1.5e-08 64.7 54 63.0
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 2.9e-07 60.5 60 58.3
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 5.5e-06 56.2 163 28.8
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 7.2e-06 55.8 164 27.4


User provided reference genes

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