Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 3.2e-114 415.2 228 100.0
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 2.9e-83 312.4 198 84.3
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 4.3e-71 271.9 231 74.5
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 3.7e-62 242.3 182 73.6
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 3.0e-48 196.1 229 57.2
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 3.0e-48 196.1 229 57.2
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 1.5e-47 193.7 218 57.3
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 2.8e-46 189.5 219 57.5
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 9.1e-45 184.5 216 56.5
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 2.9e-43 179.5 221 59.3
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 5.5e-42 175.3 226 52.2
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 9.4e-42 174.5 215 58.6
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 6.1e-41 171.8 225 52.9
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 8.8e-40 167.9 229 53.3
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 2.6e-39 166.4 209 56.5
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 3.4e-39 166.0 220 53.6
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 9.8e-39 164.5 213 52.1
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 1.1e-37 161.0 232 50.0
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 7.0e-37 158.3 269 44.6
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 9.1e-37 157.9 216 50.5
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 1.6e-36 157.1 212 52.8
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 4.5e-36 155.6 219 51.1
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 1.7e-35 153.7 219 51.1
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 2.9e-35 152.9 216 52.3
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 6.6e-35 151.8 221 48.4
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 8.6e-35 151.4 220 48.2
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 1.9e-34 150.2 230 47.4
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 9.5e-34 147.9 224 51.3
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 2.8e-33 146.4 245 44.9
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 3.6e-33 146.0 219 49.3
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 6.1e-33 145.2 203 51.7
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 6.1e-33 145.2 225 47.1
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 8.0e-33 144.8 221 47.1
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 1.4e-32 144.1 229 50.2
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 1.8e-32 143.7 222 46.8
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 4.0e-32 142.5 242 45.0
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 1.5e-31 140.6 263 42.6
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 1.5e-31 140.6 230 48.7
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 1.5e-31 140.6 210 48.1
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 2.0e-31 140.2 239 43.5
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 2.6e-31 139.8 254 44.1
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 3.4e-31 139.4 216 46.3
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 7.5e-31 138.3 226 46.9
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 7.5e-31 138.3 201 48.3
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 9.8e-31 137.9 213 48.4
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 1.3e-30 137.5 233 42.1
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 2.2e-30 136.7 240 44.6
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 2.2e-30 136.7 250 42.4
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 8.3e-30 134.8 220 45.9
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 1.4e-29 134.0 201 45.8
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 1.4e-29 134.0 248 43.1
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 2.4e-29 133.3 236 46.6
Cc02_g23010 Coffea canephora HOM05D007616 ORTHO05D008751 3.2e-29 132.9 237 48.5
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 3.2e-29 132.9 258 41.1
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 4.1e-29 132.5 191 47.6
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 1.2e-28 131.0 229 44.1
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 1.6e-28 130.6 229 42.8
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 2.0e-28 130.2 256 42.2
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 1.0e-27 127.9 231 46.8
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 3.9e-27 125.9 220 43.6
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 1.1e-26 124.4 133 57.1
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 5.6e-26 122.1 244 44.7
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 1.2e-25 120.9 268 36.2
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 1.0e-24 117.9 167 50.3
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 1.8e-24 117.1 209 40.2
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 3.1e-24 116.3 209 42.6
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 1.2e-23 114.4 224 42.0
CAN.G798.53 Capsicum annuum HOM05D007616 ORTHO05D008751 1.5e-23 114.0 230 41.3
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 9.8e-23 111.3 203 43.8
Potri.019G021000 Populus trichocarpa HOM05D007616 ORTHO05D008751 1.7e-22 110.5 225 42.7
SGA_v2.0_scaffold272G46374 Striga asiatica HOM05D007616 ORTHO05D008751 8.3e-22 108.2 224 40.2
Haze_10065 Corylus avellana HOM05D001654 ORTHO05D002773 3.2e-21 106.3 190 47.4
Nn1g08457 Nelumbo nucifera HOM05D007616 ORTHO05D008751 5.4e-21 105.5 216 42.1
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 7.0e-21 105.1 208 43.8
Cfa004508 Carpinus fangiana HOM05D007616 ORTHO05D008751 1.2e-20 104.4 219 44.3
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 1.2e-20 104.4 280 35.7
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 1.6e-20 104.0 278 34.2
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 9.5e-18 94.7 164 42.7
ATR0090G002 Amborella trichopoda HOM05D007616 ORTHO05D008751 2.3e-16 90.1 178 38.2
Ah.06g187740 Amaranthus hybridus HOM05D007616 ORTHO05D008751 3.1e-16 89.7 122 50.8
Carub.0002s0656 Capsella rubella HOM05D012662 ORTHO05D008751 5.2e-16 89.0 243 36.6
TWI14G0953 Tripterygium wilfordii HOM05D007616 ORTHO05D008751 5.2e-16 89.0 221 36.7
ECA240G3878 Erigeron canadensis HOM05D007616 ORTHO05D008751 6.8e-16 88.6 210 35.7
A09p18580 Brassica napus HOM05D012662 ORTHO05D008751 8.9e-16 88.2 198 38.4
GSVIVG01023272001 Vitis vinifera HOM05D007616 ORTHO05D008751 1.2e-15 87.8 232 39.2
Zm00001eb202050 Zea mays HOM05D007616 ORTHO05D008751 2.0e-15 87.0 260 33.5
C01p35720 Brassica napus HOM05D007616 ORTHO05D008751 4.9e-14 82.4 114 47.4
BolC1t03530H Brassica oleracea HOM05D007616 ORTHO05D008751 4.9e-14 82.4 114 47.4
Os11g0195800 Oryza sativa ssp. japonica HOM05D007616 ORTHO05D008751 8.3e-14 81.6 267 33.3
Hma1.2p1_1108F.1_g257940 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 3.2e-13 79.7 231 38.5
C04p26930 Brassica napus HOM05D007616 ORTHO05D008751 7.1e-13 78.6 128 49.2
BolC4t24105H Brassica oleracea HOM05D007616 ORTHO05D008751 7.1e-13 78.6 128 49.2
SalBow3G1194 Salvia bowleyana HOM05D007616 ORTHO05D008751 7.8e-12 75.1 207 38.6
Dinv07475 Davidia involucrata HOM05D001654 ORTHO05D002773 2.3e-11 73.6 187 41.2
CARHR053990 Cardamine hirsuta HOM05D012662 ORTHO05D008751 3.0e-11 73.2 253 33.2
vmacro19869 Vaccinium macrocarpon HOM05D007616 ORTHO05D008751 3.0e-11 73.2 97 53.6
Haze_22627 Corylus avellana HOM05D002661 ORTHO05D002786 5.1e-11 72.4 210 32.4
Lsat_1_v5_gn_7_76421 Lactuca sativa HOM05D007616 ORTHO05D008751 8.6e-11 71.6 226 31.9
Rhsim05G0130500 Rhododendron simsii HOM05D007616 ORTHO05D008751 1.5e-10 70.9 112 50.9
MBI05_g15357_MAGBIO Magnolia biondii HOM05D002661 ORTHO05D002786 2.5e-10 70.1 213 31.0
Prupe.1G366100 Prunus persica HOM05D002661 ORTHO05D002786 3.3e-10 69.7 223 31.4
TAR381G1099 Trochodendron aralioides HOM05D002661 ORTHO05D002786 5.6e-10 68.9 212 32.1
MD08G1013500 Malus domestica HOM05D002661 ORTHO05D002786 7.3e-10 68.6 216 31.5
BraA09t37484Z Brassica rapa HOM05D012662 ORTHO05D008751 9.5e-10 68.2 198 37.9
Dinv40084 Davidia involucrata HOM05D002661 ORTHO05D002786 1.2e-09 67.8 213 32.4
Cfa013943 Carpinus fangiana HOM05D002661 ORTHO05D002786 1.6e-09 67.4 215 31.2
MSTRG.2712 Avicennia marina HOM05D002661 ORTHO05D002786 2.8e-09 66.6 213 32.4
Duzib041G0251 Durio zibethinus HOM05D002661 ORTHO05D002786 2.8e-09 66.6 219 30.6
Ciclev10002504m.g Citrus clementina HOM05D002661 ORTHO05D002786 3.6e-09 66.2 218 32.1
Rhsim07G0246900 Rhododendron simsii HOM05D002661 ORTHO05D002786 4.7e-09 65.9 202 32.2
FAN05G5322 Fragaria x ananassa HOM05D007616 ORTHO05D008751 6.2e-09 65.5 92 52.2
unitig_21.g20913 Utricularia gibba HOM05D007616 ORTHO05D008751 6.2e-09 65.5 224 33.0
COL.COLO4_26155 Corchorus olitorius HOM05D002661 ORTHO05D002786 1.1e-08 64.7 219 31.1
Aqoxy4G02812 Aquilegia oxysepala HOM05D002661 ORTHO05D002786 1.4e-08 64.3 212 31.6
ATR0481G008 Amborella trichopoda HOM05D002661 ORTHO05D002786 1.8e-08 63.9 237 30.0
QL11p039511 Quercus lobata HOM05D007616 ORTHO05D008751 1.8e-08 63.9 44 65.9
BcaC04g22113 Brassica carinata HOM05D012662 ORTHO05D008751 3.1e-08 63.2 97 44.3
C09p23200 Brassica napus HOM05D012662 ORTHO05D008751 3.1e-08 63.2 97 44.3
BolC9t55239H Brassica oleracea HOM05D012662 ORTHO05D008751 3.1e-08 63.2 97 44.3
CANSAT01G1513 Cannabis sativa HOM05D002661 ORTHO05D002786 3.1e-08 63.2 226 27.9
QL02p011493 Quercus lobata HOM05D002661 ORTHO05D002786 3.1e-08 63.2 214 29.9
Migut.C00825 Erythranthe guttata HOM05D002661 ORTHO05D002786 4.0e-08 62.8 223 28.3
FvH4_2g38540 Fragaria vesca HOM05D002661 ORTHO05D002786 5.2e-08 62.4 224 29.5
FAN20G0494 Fragaria x ananassa HOM05D002661 ORTHO05D002786 5.2e-08 62.4 208 28.8
Thecc.01G019200 Theobroma cacao HOM05D002661 ORTHO05D002786 5.2e-08 62.4 217 29.5
Cfa006970 Carpinus fangiana HOM05D002668 ORTHO05D003295 6.8e-08 62.0 206 31.6
Os02g0554200 Oryza sativa ssp. japonica HOM05D036147 ORTHO05D008751 6.8e-08 62.0 123 39.0
Sp2g05500 Schrenkiella parvula HOM05D012662 ORTHO05D008751 8.9e-08 61.6 199 37.2
Solyc03g033550.3 Solanum lycopersicum HOM05D002661 ORTHO05D002786 8.9e-08 61.6 222 30.6
Sopen03g006340 Solanum pennellii HOM05D002661 ORTHO05D002786 8.9e-08 61.6 222 30.6
Lj4A25T51 Lonicera japonica HOM05D002661 ORTHO05D002786 1.2e-07 61.2 209 30.1
Nitab4.5_0000337g0140 Nicotiana tabacum HOM05D002661 ORTHO05D002786 1.2e-07 61.2 218 29.8
vmacro21919 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 1.2e-07 61.2 222 29.3
AUR62029460 Chenopodium quinoa HOM05D002661 ORTHO05D002786 1.5e-07 60.8 98 40.8
Cpa.g.sc6.246 Carica papaya HOM05D002661 ORTHO05D002786 2.0e-07 60.5 213 28.6
Dinv39512 Davidia involucrata HOM05D002661 ORTHO05D002786 2.0e-07 60.5 203 32.5
Hma1.2p1_0427F.1_g150730 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 2.0e-07 60.5 128 43.0
Peaxi162Scf00034g02717 Petunia axillaris HOM05D002661 ORTHO05D002786 2.0e-07 60.5 223 29.1
Phvul.009G016600 Phaseolus vulgaris HOM05D002661 ORTHO05D002786 2.0e-07 60.5 216 27.3
Cc10_g01730 Coffea canephora HOM05D002661 ORTHO05D002786 2.6e-07 60.1 219 28.8
Zm00001eb391910 Zea mays HOM05D036147 ORTHO05D008751 2.6e-07 60.1 116 38.8
Ca_15484_v3 Cicer arietinum L. HOM05D002661 ORTHO05D002786 3.4e-07 59.7 234 26.9
Potri.002G023000 Populus trichocarpa HOM05D002661 ORTHO05D002786 3.4e-07 59.7 211 29.9
AUR62003372 Chenopodium quinoa HOM05D002661 ORTHO05D002786 4.4e-07 59.3 221 29.0
DCAR_013866 Daucus carota HOM05D002661 ORTHO05D002786 4.4e-07 59.3 219 26.9
Oeu046268.1 Olea europaea HOM05D000745 ORTHO05D000641 4.4e-07 59.3 209 29.7
vmacro04348 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 4.4e-07 59.3 199 30.7
Zm00001eb243820 Zea mays HOM05D036147 ORTHO05D008751 4.4e-07 59.3 234 27.8
Manes.05G148000 Manihot esculenta HOM05D002661 ORTHO05D002786 5.8e-07 58.9 226 30.1
Peaxi162Scf00400g00048 Petunia axillaris HOM05D002661 ORTHO05D002786 5.8e-07 58.9 208 31.2
PGSC0003DMG400022533 Solanum tuberosum HOM05D002661 ORTHO05D002786 5.8e-07 58.9 221 29.9
CiPaw.08G131700 Carya illinoinensis HOM05D002661 ORTHO05D002786 7.6e-07 58.5 216 28.2
Nitab4.5_0006286g0080 Nicotiana tabacum HOM05D002661 ORTHO05D002786 7.6e-07 58.5 231 27.3
FAN15G3636 Fragaria x ananassa HOM05D002661 ORTHO05D002786 9.9e-07 58.2 229 28.8
FAN27G2774 Fragaria x ananassa HOM05D002661 ORTHO05D002786 9.9e-07 58.2 229 28.8
MD02G1132800 Malus domestica HOM05D002661 ORTHO05D002786 9.9e-07 58.2 224 27.2
Nitab4.5_0003271g0010 Nicotiana tabacum HOM05D002661 ORTHO05D002786 9.9e-07 58.2 225 26.2
RcHm_v2.0_Chr6g0302771 Rosa chinensis HOM05D002661 ORTHO05D002786 9.9e-07 58.2 230 28.7
Thecc.08G043600 Theobroma cacao HOM05D002661 ORTHO05D002786 1.3e-06 57.8 225 30.7
Oeu005316.1 Olea europaea HOM05D002661 ORTHO05D002786 1.7e-06 57.4 213 30.0
Duzib093G0349 Durio zibethinus HOM05D002661 ORTHO05D002786 2.9e-06 56.6 216 29.2
TWI73G0139 Tripterygium wilfordii HOM05D002661 ORTHO05D002786 2.9e-06 56.6 219 30.1
Actinidia16982 Actinidia chinensis HOM05D002661 ORTHO05D002786 3.7e-06 56.2 122 34.4
MSTRG.23411 Avicennia marina HOM05D002661 ORTHO05D002786 3.7e-06 56.2 213 30.0
C02p33750 Brassica napus HOM05D002661 ORTHO05D002786 3.7e-06 56.2 84 41.7
MD15G1013000 Malus domestica HOM05D002661 ORTHO05D002786 3.7e-06 56.2 217 29.5
SalBow7G2684 Salvia bowleyana HOM05D002661 ORTHO05D002786 3.7e-06 56.2 91 39.6
Gorai.010G004800 Gossypium raimondii HOM05D002661 ORTHO05D002786 4.9e-06 55.8 221 29.4
Actinidia28594 Actinidia chinensis HOM05D002661 ORTHO05D002786 6.4e-06 55.5 98 38.8
Nitab4.5_0006119g0020 Nicotiana tabacum HOM05D002661 ORTHO05D002786 6.4e-06 55.5 210 30.0
THA.LOC104811385 Tarenaya hassleriana HOM05D002661 ORTHO05D002786 6.4e-06 55.5 211 27.5
ATR0481G002 Amborella trichopoda HOM05D002661 ORTHO05D002786 8.4e-06 55.1 237 29.5
MD15G1245800 Malus domestica HOM05D002661 ORTHO05D002786 8.4e-06 55.1 209 27.8
Peaxi162Scf00083g00420 Petunia axillaris HOM05D002661 ORTHO05D002786 8.4e-06 55.1 221 26.7
Peaxi162Scf00083g00513 Petunia axillaris HOM05D002661 ORTHO05D002786 8.4e-06 55.1 221 26.7
TAR624G1080 Trochodendron aralioides HOM05D007616 ORTHO05D008751 8.4e-06 55.1 100 42.0


User provided reference genes

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